RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 ARL2P36404 184 aa11.6□□□□□ -0.55
PTPRF-204ENST00000412568 YWHAHQ04917 246 aaPredicted RBP11.6□□□□□ -0.55
PTPRF-204ENST00000412568 NBPF20Q3BBV1 942 aa11.6□□□□□ -0.55
PTPRF-204ENST00000412568 LVRNQ6Q4G3 990 aa11.6□□□□□ -0.55
PTPRF-204ENST00000412568 SH3TC2Q8TF17 1288 aa11.6□□□□□ -0.55
PTPRF-204ENST00000412568 SERPINB12Q96P63 405 aa11.6□□□□□ -0.55
PTPRF-204ENST00000412568 EIF2AQ9BY44 585 aaKnown RBP11.6□□□□□ -0.55
PTPRF-204ENST00000412568 ULBP1Q9BZM6 244 aa11.6□□□□□ -0.55
PTPRF-204ENST00000412568 ATXN3LQ9H3M9 355 aa11.6□□□□□ -0.55
PTPRF-204ENST00000412568 APOBEC3GQ9HC16 384 aaKnown RBP11.6□□□□□ -0.55
PTPRF-204ENST00000412568 SIX2Q9NPC8 291 aa11.6□□□□□ -0.55
PTPRF-204ENST00000412568 WHRNQ9P202 907 aa11.6□□□□□ -0.55
PTPRF-204ENST00000412568 RPS6KL1Q9Y6S9 549 aa11.6□□□□□ -0.55
PTPRF-204ENST00000412568 IRS2Q9Y4H2 1338 aa11.6□□□□□ -0.55
PTPRF-204ENST00000412568 HMGCRP04035 888 aa11.6□□□□□ -0.55
PTPRF-204ENST00000412568 ARFIP2P53365 341 aa11.6□□□□□ -0.55
PTPRF-204ENST00000412568 RTP1P59025 263 aa11.6□□□□□ -0.55
PTPRF-204ENST00000412568 BMPR2Q13873 1038 aa11.6□□□□□ -0.55
PTPRF-204ENST00000412568 FAM110CQ1W6H9 321 aa11.6□□□□□ -0.55
PTPRF-204ENST00000412568 PPP1R26Q5T8A7 1209 aaPredicted RBP11.6□□□□□ -0.55
PTPRF-204ENST00000412568 SDHAF4Q5VUM1 108 aa11.6□□□□□ -0.55
PTPRF-204ENST00000412568 TRPM8Q7Z2W7 1104 aa11.6□□□□□ -0.55
PTPRF-204ENST00000412568 KIF2BQ8N4N8 673 aa11.6□□□□□ -0.55
PTPRF-204ENST00000412568 C1orf127Q8N9H9 656 aa11.6□□□□□ -0.55
PTPRF-204ENST00000412568 SHCBP1Q8NEM2 672 aa11.6□□□□□ -0.55
PTPRF-204ENST00000412568 SPDL1Q96EA4 605 aa11.6□□□□□ -0.55
PTPRF-204ENST00000412568 MAML3Q96JK9 1138 aa11.6□□□□□ -0.55
PTPRF-204ENST00000412568 UNKQ9C0B0 810 aaKnown RBP11.6□□□□□ -0.55
PTPRF-204ENST00000412568 C20orf96Q9NUD7 363 aaPredicted RBP11.6□□□□□ -0.55
PTPRF-204ENST00000412568 CTNNAL1Q9UBT7 734 aa11.6□□□□□ -0.55
PTPRF-204ENST00000412568 SCOCQ9UIL1 159 aa11.6□□□□□ -0.55
PTPRF-204ENST00000412568 ZC3H4Q9UPT8 1303 aaKnown RBP11.6□□□□□ -0.55
PTPRF-204ENST00000412568 CCT8L1PA6NM43 557 aa11.6□□□□□ -0.55
PTPRF-204ENST00000412568 GYG2O15488 501 aa11.6□□□□□ -0.55
PTPRF-204ENST00000412568 TTC4O95801 387 aa11.6□□□□□ -0.55
PTPRF-204ENST00000412568 C4BPAP04003 597 aaKnown RBP11.6□□□□□ -0.55
PTPRF-204ENST00000412568 TPH1P17752 444 aa11.6□□□□□ -0.55
PTPRF-204ENST00000412568 VCPP55072 806 aaKnown RBP11.6□□□□□ -0.55
PTPRF-204ENST00000412568 CCL23P55773 120 aa11.6□□□□□ -0.55
PTPRF-204ENST00000412568 ZNF268Q14587 947 aaPredicted RBP11.6□□□□□ -0.55
PTPRF-204ENST00000412568 FAM171A1Q5VUB5 890 aa11.6□□□□□ -0.55
PTPRF-204ENST00000412568 CHADLQ6NUI6 762 aa11.6□□□□□ -0.55
PTPRF-204ENST00000412568 SOCS4Q8WXH5 440 aa11.6□□□□□ -0.55
PTPRF-204ENST00000412568 FBXO32Q969P5 355 aa11.6□□□□□ -0.55
PTPRF-204ENST00000412568 TMEM169Q96HH4 297 aa11.6□□□□□ -0.55
PTPRF-204ENST00000412568 RNF208Q9H0X6 261 aa11.6□□□□□ -0.55
PTPRF-204ENST00000412568 MINDY3Q9H8M7 445 aa11.6□□□□□ -0.55
PTPRF-204ENST00000412568 AVENQ9NQS1 362 aaPredicted RBP11.6□□□□□ -0.55
PTPRF-204ENST00000412568 SENP1Q9P0U3 644 aa11.6□□□□□ -0.55
PTPRF-204ENST00000412568 NT5C1B-RDH14C9J2C7 533 aa11.6□□□□□ -0.55
PTPRF-204ENST00000412568 PPFIA2O75334 1257 aa11.6□□□□□ -0.55
PTPRF-204ENST00000412568 BANF1O75531 89 aa11.6□□□□□ -0.55
PTPRF-204ENST00000412568 MMP3P08254 477 aa11.6□□□□□ -0.55
PTPRF-204ENST00000412568 PAMP19021 973 aa11.6□□□□□ -0.55
PTPRF-204ENST00000412568 FLT3P36888 993 aa11.6□□□□□ -0.55
PTPRF-204ENST00000412568 RABGGTBP53611 331 aa11.6□□□□□ -0.55
PTPRF-204ENST00000412568 PTPN20Q4JDL3 420 aa11.6□□□□□ -0.55
PTPRF-204ENST00000412568 PIGZQ86VD9 579 aa11.6□□□□□ -0.55
PTPRF-204ENST00000412568 PARP9Q8IXQ6 854 aa11.6□□□□□ -0.55
PTPRF-204ENST00000412568 PPTC7Q8NI37 304 aa11.6□□□□□ -0.55
PTPRF-204ENST00000412568 SGSM3Q96HU1 749 aa11.6□□□□□ -0.55
PTPRF-204ENST00000412568 SLITRK1Q96PX8 696 aa11.6□□□□□ -0.55
PTPRF-204ENST00000412568 MRPL45Q9BRJ2 306 aaKnown RBP11.6□□□□□ -0.55
PTPRF-204ENST00000412568 PIDD1Q9HB75 910 aa11.6□□□□□ -0.55
PTPRF-204ENST00000412568 CYP4F11Q9HBI6 524 aa11.6□□□□□ -0.55
PTPRF-204ENST00000412568 SMPD4Q9NXE4 827 aa11.6□□□□□ -0.55
PTPRF-204ENST00000412568 COL18A1P39060 1754 aa11.6□□□□□ -0.55
PTPRF-204ENST00000412568 PKD1L3Q7Z443 1732 aa11.59□□□□□ -0.55
PTPRF-204ENST00000412568 BTNL10A8MVZ5 291 aa11.59□□□□□ -0.55
PTPRF-204ENST00000412568 RIPK2O43353 540 aa11.59□□□□□ -0.55
PTPRF-204ENST00000412568 SHBGP04278 402 aa11.59□□□□□ -0.55
PTPRF-204ENST00000412568 SKIP12755 728 aa11.59□□□□□ -0.55
PTPRF-204ENST00000412568 RBL1P28749 1068 aa11.59□□□□□ -0.55
PTPRF-204ENST00000412568 ZC3H12AQ5D1E8 599 aaKnown RBP11.59□□□□□ -0.55
PTPRF-204ENST00000412568 TMEM63BQ5T3F8 832 aa11.59□□□□□ -0.55
PTPRF-204ENST00000412568 FAM183BPQ6ZVS7 135 aa11.59□□□□□ -0.55
PTPRF-204ENST00000412568 TAS2R42Q7RTR8 314 aa11.59□□□□□ -0.55
PTPRF-204ENST00000412568 C12orf56Q8IXR9 622 aa11.59□□□□□ -0.55
PTPRF-204ENST00000412568 CDC26Q8NHZ8 85 aa11.59□□□□□ -0.55
PTPRF-204ENST00000412568 PLEKHO2Q8TD55 490 aa11.59□□□□□ -0.55
PTPRF-204ENST00000412568 VCPIP1Q96JH7 1222 aa11.59□□□□□ -0.55
PTPRF-204ENST00000412568 FAM111AQ96PZ2 611 aa11.59□□□□□ -0.55
PTPRF-204ENST00000412568 CPXM1Q96SM3 734 aa11.59□□□□□ -0.55
PTPRF-204ENST00000412568 TSC22D3Q99576 134 aa11.59□□□□□ -0.55
PTPRF-204ENST00000412568 SHCBP1LQ9BZQ2 653 aa11.59□□□□□ -0.55
PTPRF-204ENST00000412568 FOXP3Q9BZS1 431 aa11.59□□□□□ -0.55
PTPRF-204ENST00000412568 DONSONQ9NYP3 566 aa11.59□□□□□ -0.55
PTPRF-204ENST00000412568 SPTLC1O15269 473 aa11.59□□□□□ -0.55
PTPRF-204ENST00000412568 BRCC3P46736 316 aa11.59□□□□□ -0.55
PTPRF-204ENST00000412568 ANO4Q32M45 955 aa11.59□□□□□ -0.55
PTPRF-204ENST00000412568 IQCKQ8N0W5 287 aa11.59□□□□□ -0.55
PTPRF-204ENST00000412568 ARMC2Q8NEN0 867 aa11.59□□□□□ -0.55
PTPRF-204ENST00000412568 ZNF516Q92618 1163 aa11.59□□□□□ -0.55
PTPRF-204ENST00000412568 KAT2BQ92831 832 aa11.59□□□□□ -0.55
PTPRF-204ENST00000412568 SMG5Q9UPR3 1016 aaKnown RBP11.59□□□□□ -0.55
PTPRF-204ENST00000412568 STRCP1A6NGW2 1772 aa11.59□□□□□ -0.55
PTPRF-204ENST00000412568 NEMP1O14524 444 aa11.59□□□□□ -0.55
PTPRF-204ENST00000412568 HAUS5O94927 633 aa11.59□□□□□ -0.55
PTPRF-204ENST00000412568 CYP1A2P05177 515 aa11.59□□□□□ -0.55
PTPRF-204ENST00000412568 OCRLQ01968 901 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms