RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 YIPF3Q9GZM5 350 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 SDCBP2Q9H190 292 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 XYLT2Q9H1B5 865 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 USP29Q9HBJ7 922 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 POPDC2Q9HBU9 364 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 THAP1Q9NVV9 213 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 USTQ9Y2C2 406 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 C2CD2Q9Y426 696 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 IKBKGQ9Y6K9 419 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 COMMD3-BMI1R4GMX3 469 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 TSC2P49815 1807 aa5.97□□□□□ -1.45
CCDC88A-203ENST00000412148 COL4A5P29400 1685 aa5.96□□□□□ -1.45
CCDC88A-203ENST00000412148 A0A0G2JND7 137 aa5.96□□□□□ -1.45
CCDC88A-203ENST00000412148 KBTBD13C9JR72 458 aa5.96□□□□□ -1.45
CCDC88A-203ENST00000412148 SPECC1L-ADORA2AF8WAN1 911 aa5.96□□□□□ -1.45
CCDC88A-203ENST00000412148 PI4K2BG5E9Z4 385 aa5.96□□□□□ -1.45
CCDC88A-203ENST00000412148 K7ERI5 159 aa5.96□□□□□ -1.45
CCDC88A-203ENST00000412148 COPEO14579 308 aa5.96□□□□□ -1.45
CCDC88A-203ENST00000412148 SLC22A2O15244 555 aa5.96□□□□□ -1.45
CCDC88A-203ENST00000412148 STRNO43815 780 aa5.96□□□□□ -1.45
CCDC88A-203ENST00000412148 TOM1L1O75674 476 aa5.96□□□□□ -1.45
CCDC88A-203ENST00000412148 CIB2O75838 187 aa5.96□□□□□ -1.45
CCDC88A-203ENST00000412148 KRT38O76015 456 aa5.96□□□□□ -1.45
CCDC88A-203ENST00000412148 TRUB2O95900 331 aaKnown RBP5.96□□□□□ -1.45
CCDC88A-203ENST00000412148 OATP04181 439 aa5.96□□□□□ -1.45
CCDC88A-203ENST00000412148 BPGMP07738 259 aa5.96□□□□□ -1.45
CCDC88A-203ENST00000412148 LYNP07948 512 aa5.96□□□□□ -1.45
CCDC88A-203ENST00000412148 GNAT1P11488 350 aa5.96□□□□□ -1.45
CCDC88A-203ENST00000412148 KRT3P12035 628 aa5.96□□□□□ -1.45
CCDC88A-203ENST00000412148 IBSPP21815 317 aaPredicted RBP5.96□□□□□ -1.45
CCDC88A-203ENST00000412148 ELK3P41970 407 aa5.96□□□□□ -1.45
CCDC88A-203ENST00000412148 ASPAP45381 313 aa5.96□□□□□ -1.45
CCDC88A-203ENST00000412148 GDF10P55107 478 aa5.96□□□□□ -1.45
CCDC88A-203ENST00000412148 EIF3EP60228 445 aaKnown RBP5.96□□□□□ -1.45
CCDC88A-203ENST00000412148 ACTR2P61160 394 aa5.96□□□□□ -1.45
CCDC88A-203ENST00000412148 SF3A3Q12874 501 aaKnown RBP eCLIP5.96□□□□□ -1.45
CCDC88A-203ENST00000412148 EFTUD2Q15029 972 aaKnown RBP eCLIP5.96□□□□□ -1.45
CCDC88A-203ENST00000412148 GNPTABQ3T906 1256 aa5.96□□□□□ -1.45
CCDC88A-203ENST00000412148 KBTBD12Q3ZCT8 623 aa5.96□□□□□ -1.45
CCDC88A-203ENST00000412148 C9orf131Q5VYM1 1079 aa5.96□□□□□ -1.45
CCDC88A-203ENST00000412148 SLC9A4Q6AI14 798 aa5.96□□□□□ -1.45
CCDC88A-203ENST00000412148 TRIM68Q6AZZ1 485 aa5.96□□□□□ -1.45
CCDC88A-203ENST00000412148 SPOPLQ6IQ16 392 aa5.96□□□□□ -1.45
CCDC88A-203ENST00000412148 GPAT2Q6NUI2 795 aa5.96□□□□□ -1.45
CCDC88A-203ENST00000412148 PHLDB2Q86SQ0 1253 aa5.96□□□□□ -1.45
CCDC88A-203ENST00000412148 XYLT1Q86Y38 959 aa5.96□□□□□ -1.45
CCDC88A-203ENST00000412148 CCNJLQ8IV13 435 aa5.96□□□□□ -1.45
CCDC88A-203ENST00000412148 PASD1Q8IV76 773 aa5.96□□□□□ -1.45
CCDC88A-203ENST00000412148 CDAN1Q8IWY9 1227 aa5.96□□□□□ -1.45
CCDC88A-203ENST00000412148 ULK2Q8IYT8 1036 aa5.96□□□□□ -1.45
CCDC88A-203ENST00000412148 OR6Y1Q8NGX8 325 aa5.96□□□□□ -1.45
CCDC88A-203ENST00000412148 FAM172AQ8WUF8 416 aa5.96□□□□□ -1.45
CCDC88A-203ENST00000412148 IRGQQ8WZA9 623 aa5.96□□□□□ -1.45
CCDC88A-203ENST00000412148 ISL2Q96A47 359 aa5.96□□□□□ -1.45
CCDC88A-203ENST00000412148 E2F7Q96AV8 911 aa5.96□□□□□ -1.45
CCDC88A-203ENST00000412148 PHOX2BQ99453 314 aa5.96□□□□□ -1.45
CCDC88A-203ENST00000412148 NMUR2Q9GZQ4 415 aa5.96□□□□□ -1.45
CCDC88A-203ENST00000412148 CYP3A43Q9HB55 503 aa5.96□□□□□ -1.45
CCDC88A-203ENST00000412148 CISHQ9NSE2 258 aa5.96□□□□□ -1.45
CCDC88A-203ENST00000412148 DNAJC28Q9NX36 388 aa5.96□□□□□ -1.45
CCDC88A-203ENST00000412148 PLK2Q9NYY3 685 aa5.96□□□□□ -1.45
CCDC88A-203ENST00000412148 DLGAP2Q9P1A6 1054 aa5.96□□□□□ -1.45
CCDC88A-203ENST00000412148 VPS28Q9UK41 221 aa5.96□□□□□ -1.45
CCDC88A-203ENST00000412148 CPSF3Q9UKF6 684 aaKnown RBP5.96□□□□□ -1.45
CCDC88A-203ENST00000412148 KIAA1257Q9ULG3 409 aa5.96□□□□□ -1.45
CCDC88A-203ENST00000412148 SOX13Q9UN79 622 aa5.96□□□□□ -1.45
CCDC88A-203ENST00000412148 AGTPBP1Q9UPW5 1226 aa5.96□□□□□ -1.45
CCDC88A-203ENST00000412148 HBS1LQ9Y450 684 aaKnown RBP5.96□□□□□ -1.45
CCDC88A-203ENST00000412148 CITO14578 2027 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 TRIP11Q15643 1979 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 SMIM31A0A1B0GVY4 71 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 EME2A4GXA9 379 aaPredicted RBP5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 VWA5AO00534 786 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 OGTO15294 1046 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 ATP9BO43861 1147 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 RGS20O76081 388 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 IL18RAPO95256 599 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 APOEP02649 317 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 HMGCRP04035 888 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 EIF2AK2P19525 551 aaKnown RBP5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 KCNA3P22001 575 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 PSMA2P25787 234 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 IL1R2P27930 398 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 ATICP31939 592 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 NUMBP49757 651 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 ZNF143P52747 638 aaPredicted RBP5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 YWHAZP63104 245 aaKnown RBP5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 MRPS5P82675 430 aaKnown RBP5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 ROR1Q01973 937 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 ZBTB16Q05516 673 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 TUBB3Q13509 450 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 DUOXA2Q1HG44 320 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 USP41Q3LFD5 358 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 RABGAP1LQ5R372 815 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 FOXB2Q5VYV0 432 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 KAZNQ674X7 775 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 CYP4V2Q6ZWL3 525 aaPredicted RBP5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 MARK2Q7KZI7 788 aaKnown RBP5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 PDSS2Q86YH6 399 aa5.96□□□□□ -1.46
CCDC88A-203ENST00000412148 ANKMY2Q8IV38 441 aa5.96□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms