RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 KCNK1O00180 336 aa13.94□□□□□ -0.18
VPS54-203ENST00000409558 ATP6V1G2O95670 118 aa13.94□□□□□ -0.18
VPS54-203ENST00000409558 NAA25Q14CX7 972 aa13.94□□□□□ -0.18
VPS54-203ENST00000409558 C16orf46Q6P387 395 aa13.94□□□□□ -0.18
VPS54-203ENST00000409558 TRMT10BQ6PF06 316 aaKnown RBP13.94□□□□□ -0.18
VPS54-203ENST00000409558 MAGEB18Q96M61 343 aa13.94□□□□□ -0.18
VPS54-203ENST00000409558 RABGEF1Q9UJ41 708 aa13.94□□□□□ -0.18
VPS54-203ENST00000409558 BARX2Q9UMQ3 279 aaPredicted RBP13.94□□□□□ -0.18
VPS54-203ENST00000409558 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.94□□□□□ -0.18
VPS54-203ENST00000409558 CHUKO15111 745 aa13.94□□□□□ -0.18
VPS54-203ENST00000409558 DIAPH2O60879 1101 aa13.94□□□□□ -0.18
VPS54-203ENST00000409558 RECQL4O94761 1208 aa13.94□□□□□ -0.18
VPS54-203ENST00000409558 SLC25A27O95847 323 aa13.94□□□□□ -0.18
VPS54-203ENST00000409558 NDUFV1P49821 464 aa13.94□□□□□ -0.18
VPS54-203ENST00000409558 AP3M2P53677 418 aa13.94□□□□□ -0.18
VPS54-203ENST00000409558 TAF1BQ53T94 588 aaPredicted RBP13.94□□□□□ -0.18
VPS54-203ENST00000409558 TTC16Q8NEE8 873 aa13.94□□□□□ -0.18
VPS54-203ENST00000409558 SLCO2A1Q92959 643 aa13.94□□□□□ -0.18
VPS54-203ENST00000409558 SERAC1Q96JX3 654 aa13.94□□□□□ -0.18
VPS54-203ENST00000409558 PTPRHQ9HD43 1115 aa13.94□□□□□ -0.18
VPS54-203ENST00000409558 G3BP2Q9UN86 482 aaKnown RBP13.94□□□□□ -0.18
VPS54-203ENST00000409558 PHIPQ8WWQ0 1821 aa13.94□□□□□ -0.18
VPS54-203ENST00000409558 TSPAN1O60635 241 aa13.94□□□□□ -0.18
VPS54-203ENST00000409558 MYL3P08590 195 aa13.94□□□□□ -0.18
VPS54-203ENST00000409558 EZRP15311 586 aaKnown RBP13.94□□□□□ -0.18
VPS54-203ENST00000409558 NQO1P15559 274 aaKnown RBP13.94□□□□□ -0.18
VPS54-203ENST00000409558 CCDC14Q49A88 953 aa13.94□□□□□ -0.18
VPS54-203ENST00000409558 TWF2Q6IBS0 349 aaKnown RBP13.94□□□□□ -0.18
VPS54-203ENST00000409558 OTOAQ7RTW8 1153 aa13.94□□□□□ -0.18
VPS54-203ENST00000409558 ZNF75CPQ92670 426 aaPredicted RBP13.94□□□□□ -0.18
VPS54-203ENST00000409558 FER1L6Q2WGJ9 1857 aa13.94□□□□□ -0.18
VPS54-203ENST00000409558 MEIS3P2A8K0S8 358 aa13.94□□□□□ -0.18
VPS54-203ENST00000409558 ATP2A2P16615 1042 aaKnown RBP13.94□□□□□ -0.18
VPS54-203ENST00000409558 EPHB2P29323 1055 aa13.94□□□□□ -0.18
VPS54-203ENST00000409558 MAP2K2P36507 400 aa13.94□□□□□ -0.18
VPS54-203ENST00000409558 CDCA2Q69YH5 1023 aaPredicted RBP13.94□□□□□ -0.18
VPS54-203ENST00000409558 MTHFD1LQ6UB35 978 aa13.94□□□□□ -0.18
VPS54-203ENST00000409558 BBS12Q6ZW61 710 aa13.94□□□□□ -0.18
VPS54-203ENST00000409558 C3orf70A6NLC5 250 aaPredicted RBP13.93□□□□□ -0.18
VPS54-203ENST00000409558 ALOX15BO15296 676 aa13.93□□□□□ -0.18
VPS54-203ENST00000409558 CYP2C9P11712 490 aa13.93□□□□□ -0.18
VPS54-203ENST00000409558 SMPD1P17405 629 aa13.93□□□□□ -0.18
VPS54-203ENST00000409558 SPDYCQ5MJ68 293 aa13.93□□□□□ -0.18
VPS54-203ENST00000409558 PPP1R15BQ5SWA1 713 aa13.93□□□□□ -0.18
VPS54-203ENST00000409558 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.93□□□□□ -0.18
VPS54-203ENST00000409558 PLPPR4Q7Z2D5 763 aa13.93□□□□□ -0.18
VPS54-203ENST00000409558 TTC7BQ86TV6 843 aa13.93□□□□□ -0.18
VPS54-203ENST00000409558 N4BP2L2Q92802 583 aaPredicted RBP13.93□□□□□ -0.18
VPS54-203ENST00000409558 APOL1O14791 398 aa13.93□□□□□ -0.18
VPS54-203ENST00000409558 ITGAVP06756 1048 aa13.93□□□□□ -0.18
VPS54-203ENST00000409558 ABCD1P33897 745 aa13.93□□□□□ -0.18
VPS54-203ENST00000409558 NBPF20Q3BBV1 942 aa13.93□□□□□ -0.18
VPS54-203ENST00000409558 TCRBV5S1A1TA0A578 114 aa13.93□□□□□ -0.18
VPS54-203ENST00000409558 PAPSS1O43252 624 aaPredicted RBP13.93□□□□□ -0.18
VPS54-203ENST00000409558 ADCY6O43306 1168 aa13.93□□□□□ -0.18
VPS54-203ENST00000409558 VDRP11473 427 aa13.93□□□□□ -0.18
VPS54-203ENST00000409558 GOT1P17174 413 aa13.93□□□□□ -0.18
VPS54-203ENST00000409558 CCDC185Q8N715 623 aa13.93□□□□□ -0.18
VPS54-203ENST00000409558 PCDH19Q8TAB3 1148 aa13.93□□□□□ -0.18
VPS54-203ENST00000409558 NUDT5Q9UKK9 219 aa13.93□□□□□ -0.18
VPS54-203ENST00000409558 SKAP2O75563 359 aaPredicted RBP13.92□□□□□ -0.18
VPS54-203ENST00000409558 CYP2F1P24903 491 aa13.92□□□□□ -0.18
VPS54-203ENST00000409558 GPR162Q16538 588 aa13.92□□□□□ -0.18
VPS54-203ENST00000409558 PLD5Q8N7P1 536 aa13.92□□□□□ -0.18
VPS54-203ENST00000409558 STKLD1Q8NE28 680 aa13.92□□□□□ -0.18
VPS54-203ENST00000409558 DTX3LQ8TDB6 740 aa13.92□□□□□ -0.18
VPS54-203ENST00000409558 MOCOSQ96EN8 888 aa13.92□□□□□ -0.18
VPS54-203ENST00000409558 CNPY3Q9BT09 278 aa13.92□□□□□ -0.18
VPS54-203ENST00000409558 TMEM109Q9BVC6 243 aa13.92□□□□□ -0.18
VPS54-203ENST00000409558 SNX25Q9H3E2 840 aa13.92□□□□□ -0.18
VPS54-203ENST00000409558 CHKBQ9Y259 395 aa13.92□□□□□ -0.18
VPS54-203ENST00000409558 SNX10Q9Y5X0 201 aa13.92□□□□□ -0.18
VPS54-203ENST00000409558 SPDYE5A6NIY4 337 aa13.92□□□□□ -0.18
VPS54-203ENST00000409558 APOC4-APOC2K7ER74 178 aa13.92□□□□□ -0.18
VPS54-203ENST00000409558 ASMTLO95671 621 aa13.92□□□□□ -0.18
VPS54-203ENST00000409558 APOC2P02655 101 aa13.92□□□□□ -0.18
VPS54-203ENST00000409558 ITIH4Q14624 930 aa13.92□□□□□ -0.18
VPS54-203ENST00000409558 SOWAHAQ2M3V2 549 aa13.92□□□□□ -0.18
VPS54-203ENST00000409558 MAP7D3Q8IWC1 876 aa13.92□□□□□ -0.18
VPS54-203ENST00000409558 UBR7Q8N806 425 aa13.92□□□□□ -0.18
VPS54-203ENST00000409558 TMEM174Q8WUU8 243 aa13.92□□□□□ -0.18
VPS54-203ENST00000409558 RILPQ96NA2 401 aa13.92□□□□□ -0.18
VPS54-203ENST00000409558 ZNF518BQ9C0D4 1074 aa13.92□□□□□ -0.18
VPS54-203ENST00000409558 CNTN6Q9UQ52 1028 aa13.92□□□□□ -0.18
VPS54-203ENST00000409558 BTBD19C9JJ37 291 aa13.92□□□□□ -0.18
VPS54-203ENST00000409558 CAPN9O14815 690 aa13.92□□□□□ -0.18
VPS54-203ENST00000409558 IL18RAPO95256 599 aa13.92□□□□□ -0.18
VPS54-203ENST00000409558 METTL18O95568 372 aa13.92□□□□□ -0.18
VPS54-203ENST00000409558 AFF1P51825 1210 aaKnown RBP13.92□□□□□ -0.18
VPS54-203ENST00000409558 TMPRSS15P98073 1019 aa13.92□□□□□ -0.18
VPS54-203ENST00000409558 SNAPC2Q13487 334 aa13.92□□□□□ -0.18
VPS54-203ENST00000409558 MTFR1Q15390 333 aa13.92□□□□□ -0.18
VPS54-203ENST00000409558 NOL9Q5SY16 702 aaKnown RBP13.92□□□□□ -0.18
VPS54-203ENST00000409558 IL31Q6EBC2 164 aa13.92□□□□□ -0.18
VPS54-203ENST00000409558 KCNT2Q6UVM3 1135 aa13.92□□□□□ -0.18
VPS54-203ENST00000409558 CDHR3Q6ZTQ4 885 aa13.92□□□□□ -0.18
VPS54-203ENST00000409558 CCHCR1Q8TD31 782 aa13.92□□□□□ -0.18
VPS54-203ENST00000409558 EDEM1Q92611 657 aa13.92□□□□□ -0.18
VPS54-203ENST00000409558 LPPQ93052 612 aa13.92□□□□□ -0.18
VPS54-203ENST00000409558 TTC25Q96NG3 672 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms