RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 SCG2P13521 617 aa4.5□□□□□ -1.69
HMGB1-204ENST00000399489 DESP17661 470 aa4.5□□□□□ -1.69
HMGB1-204ENST00000399489 GABRB3P28472 473 aa4.5□□□□□ -1.69
HMGB1-204ENST00000399489 PTGS2P35354 604 aa4.5□□□□□ -1.69
HMGB1-204ENST00000399489 ARFIP2P53365 341 aa4.5□□□□□ -1.69
HMGB1-204ENST00000399489 UBASH3AP57075 661 aa4.5□□□□□ -1.69
HMGB1-204ENST00000399489 ACTR2P61160 394 aa4.5□□□□□ -1.69
HMGB1-204ENST00000399489 MC1RQ01726 317 aa4.5□□□□□ -1.69
HMGB1-204ENST00000399489 PPP3CAQ08209 521 aa4.5□□□□□ -1.69
HMGB1-204ENST00000399489 KRTCAP3Q53RY4 240 aa4.5□□□□□ -1.69
HMGB1-204ENST00000399489 C1orf141Q5JVX7 400 aa4.5□□□□□ -1.69
HMGB1-204ENST00000399489 GALNT17Q6IS24 598 aa4.5□□□□□ -1.69
HMGB1-204ENST00000399489 UNQ6494/PRO21346Q6UXR6 183 aa4.5□□□□□ -1.69
HMGB1-204ENST00000399489 GAREM2Q75VX8 874 aa4.5□□□□□ -1.69
HMGB1-204ENST00000399489 BTN2A1Q7KYR7 527 aa4.5□□□□□ -1.69
HMGB1-204ENST00000399489 SZRD1Q7Z422 152 aa4.5□□□□□ -1.69
HMGB1-204ENST00000399489 CCDC91Q7Z6B0 441 aa4.5□□□□□ -1.69
HMGB1-204ENST00000399489 ARHGEF25Q86VW2 580 aa4.5□□□□□ -1.69
HMGB1-204ENST00000399489 ARMC8Q8IUR7 673 aa4.5□□□□□ -1.69
HMGB1-204ENST00000399489 CEP97Q8IW35 865 aa4.5□□□□□ -1.69
HMGB1-204ENST00000399489 SAMD14Q8IZD0 417 aaPredicted RBP4.5□□□□□ -1.69
HMGB1-204ENST00000399489 NUP93Q8N1F7 819 aa4.5□□□□□ -1.69
HMGB1-204ENST00000399489 ZNF619Q8N2I2 560 aa4.5□□□□□ -1.69
HMGB1-204ENST00000399489 SH2D3CQ8N5H7 860 aa4.5□□□□□ -1.69
HMGB1-204ENST00000399489 ANKRD53Q8N9V6 530 aa4.5□□□□□ -1.69
HMGB1-204ENST00000399489 GOLGA6L2Q8N9W4 650 aaPredicted RBP4.5□□□□□ -1.69
HMGB1-204ENST00000399489 PLA2G15Q8NCC3 412 aa4.5□□□□□ -1.69
HMGB1-204ENST00000399489 RUFY2Q8WXA3 655 aa4.5□□□□□ -1.69
HMGB1-204ENST00000399489 MAML1Q92585 1016 aa4.5□□□□□ -1.69
HMGB1-204ENST00000399489 TRIM43Q96BQ3 446 aaPredicted RBP4.5□□□□□ -1.69
HMGB1-204ENST00000399489 ZG16BQ96DA0 208 aa4.5□□□□□ -1.69
HMGB1-204ENST00000399489 RNF125Q96EQ8 232 aa4.5□□□□□ -1.69
HMGB1-204ENST00000399489 ITPAQ9BY32 194 aa4.5□□□□□ -1.69
HMGB1-204ENST00000399489 TWSG1Q9GZX9 223 aa4.5□□□□□ -1.69
HMGB1-204ENST00000399489 EPS8L2Q9H6S3 715 aa4.5□□□□□ -1.69
HMGB1-204ENST00000399489 SLTMQ9NWH9 1034 aaKnown RBP eCLIP4.5□□□□□ -1.69
HMGB1-204ENST00000399489 PIH1D1Q9NWS0 290 aaKnown RBP4.5□□□□□ -1.69
HMGB1-204ENST00000399489 PRSS50Q9UI38 385 aa4.5□□□□□ -1.69
HMGB1-204ENST00000399489 TMEM5Q9Y2B1 443 aa4.5□□□□□ -1.69
HMGB1-204ENST00000399489 ATP6V0A2Q9Y487 856 aa4.5□□□□□ -1.69
HMGB1-204ENST00000399489 PCDHA3Q9Y5H8 950 aa4.5□□□□□ -1.69
HMGB1-204ENST00000399489 CYP46A1Q9Y6A2 500 aa4.5□□□□□ -1.69
HMGB1-204ENST00000399489 BICRAQ9NZM4 1560 aa4.5□□□□□ -1.69
HMGB1-204ENST00000399489 H0Y3Z8 333 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 H3BNC9 293 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 SGTAO43765 313 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 IPO13O94829 963 aaKnown RBP4.49□□□□□ -1.69
HMGB1-204ENST00000399489 PRPF6O94906 941 aaKnown RBP4.49□□□□□ -1.69
HMGB1-204ENST00000399489 PRLP01236 227 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 ALAS1P13196 640 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 ATP5F1P24539 256 aaPredicted RBP4.49□□□□□ -1.69
HMGB1-204ENST00000399489 DPP6P42658 865 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 CTCFP49711 727 aaPredicted RBP4.49□□□□□ -1.69
HMGB1-204ENST00000399489 FSTL1Q12841 308 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 PPP2R5BQ15173 497 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 ELAVL1Q15717 326 aaKnown RBP4.49□□□□□ -1.69
HMGB1-204ENST00000399489 TMEM266Q2M3C6 531 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 FLYWCH1Q4VC44 716 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 SETMARQ53H47 684 aaPredicted RBP4.49□□□□□ -1.69
HMGB1-204ENST00000399489 MUM1L1Q5H9M0 696 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 PRAMEF9Q5VWM5 478 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 ATG16L1Q676U5 607 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 NAA16Q6N069 864 aaPredicted RBP4.49□□□□□ -1.69
HMGB1-204ENST00000399489 RAPH1Q70E73 1250 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 GATAD2AQ86YP4 633 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 DNAJC10Q8IXB1 793 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 CCDC170Q8IYT3 715 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 SYNE4Q8N205 404 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 SRBD1Q8N5C6 995 aaKnown RBP4.49□□□□□ -1.69
HMGB1-204ENST00000399489 KCTD6Q8NC69 237 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 ZNF384Q8TF68 577 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 N4BP2L2Q92802 583 aaPredicted RBP4.49□□□□□ -1.69
HMGB1-204ENST00000399489 FATE1Q969F0 183 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 FOXRED1Q96CU9 486 aaPredicted RBP4.49□□□□□ -1.69
HMGB1-204ENST00000399489 FAM120BQ96EK7 910 aaKnown RBP4.49□□□□□ -1.69
HMGB1-204ENST00000399489 LRRC46Q96FV0 321 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 DYDC2Q96IM9 177 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 ZNF845Q96IR2 970 aaPredicted RBP4.49□□□□□ -1.69
HMGB1-204ENST00000399489 FEM1CQ96JP0 617 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 WDR92Q96MX6 357 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 TSGA13Q96PP4 275 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 TUBGCP5Q96RT8 1024 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 DMRTA2Q96SC8 542 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 GPR87Q9BY21 358 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 TRIM54Q9BYV2 358 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 SYNCQ9H7C4 482 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 EIF2B3Q9NR50 452 aaKnown RBP4.49□□□□□ -1.69
HMGB1-204ENST00000399489 PNPOQ9NVS9 261 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 POLR3BQ9NW08 1133 aaPredicted RBP4.49□□□□□ -1.69
HMGB1-204ENST00000399489 RGL1Q9NZL6 768 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 PI4KBQ9UBF8 816 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 RASAL2Q9UJF2 1139 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 BLOC1S6Q9UL45 172 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 TNFRSF18Q9Y5U5 241 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 A0A087WZ62 844 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 MTSS1O43312 755 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 BEST1O76090 585 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 ACTL6BO94805 426 aa4.49□□□□□ -1.69
HMGB1-204ENST00000399489 JUNP05412 331 aaKnown RBP4.49□□□□□ -1.69
HMGB1-204ENST00000399489 VSIG10L2P0DP72 767 aa4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms