RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 SCYL2Q6P3W7 929 aa21.48■■□□□ 1.03
CLK3-202ENST00000395066 METTL7BQ6UX53 244 aa21.48■■□□□ 1.03
CLK3-202ENST00000395066 FNIP1Q8TF40 1166 aa21.48■■□□□ 1.03
CLK3-202ENST00000395066 BTBD10Q9BSF8 475 aa21.48■■□□□ 1.03
CLK3-202ENST00000395066 TEX264Q9Y6I9 313 aa21.48■■□□□ 1.03
CLK3-202ENST00000395066 EVPLQ92817 2033 aa21.47■■□□□ 1.03
CLK3-202ENST00000395066 CCDC195A0A1B0GUA6 201 aa21.47■■□□□ 1.03
CLK3-202ENST00000395066 FAM237BA0A1B0GVD1 139 aa21.47■■□□□ 1.03
CLK3-202ENST00000395066 B4GALT4O60513 344 aa21.47■■□□□ 1.03
CLK3-202ENST00000395066 HAUS5O94927 633 aa21.47■■□□□ 1.03
CLK3-202ENST00000395066 NPTXRO95502 500 aa21.47■■□□□ 1.03
CLK3-202ENST00000395066 CYP3A5P20815 502 aa21.47■■□□□ 1.03
CLK3-202ENST00000395066 CPA2P48052 419 aa21.47■■□□□ 1.03
CLK3-202ENST00000395066 ERFP50548 548 aa21.47■■□□□ 1.03
CLK3-202ENST00000395066 ARFIP2P53365 341 aa21.47■■□□□ 1.03
CLK3-202ENST00000395066 SARNPP82979 210 aaKnown RBP21.47■■□□□ 1.03
CLK3-202ENST00000395066 ZBTB16Q05516 673 aa21.47■■□□□ 1.03
CLK3-202ENST00000395066 BMPR2Q13873 1038 aa21.47■■□□□ 1.03
CLK3-202ENST00000395066 TSHZ1Q6ZSZ6 1077 aa21.47■■□□□ 1.03
CLK3-202ENST00000395066 APLFQ8IW19 511 aaPredicted RBP21.47■■□□□ 1.03
CLK3-202ENST00000395066 C12orf29Q8N999 325 aa21.47■■□□□ 1.03
CLK3-202ENST00000395066 CHST13Q8NET6 341 aa21.47■■□□□ 1.03
CLK3-202ENST00000395066 RXFP2Q8WXD0 754 aa21.47■■□□□ 1.03
CLK3-202ENST00000395066 TSC22D3Q99576 134 aa21.47■■□□□ 1.03
CLK3-202ENST00000395066 BCO2Q9BYV7 579 aa21.47■■□□□ 1.03
CLK3-202ENST00000395066 VPS11Q9H270 941 aa21.47■■□□□ 1.03
CLK3-202ENST00000395066 RPF1Q9H9Y2 349 aaKnown RBP21.47■■□□□ 1.03
CLK3-202ENST00000395066 GGA3Q9NZ52 723 aa21.47■■□□□ 1.03
CLK3-202ENST00000395066 NOP56O00567 594 aaKnown RBP21.47■■□□□ 1.03
CLK3-202ENST00000395066 KCNN4O15554 427 aa21.47■■□□□ 1.03
CLK3-202ENST00000395066 GPD2P43304 727 aa21.47■■□□□ 1.03
CLK3-202ENST00000395066 NEK3P51956 506 aa21.47■■□□□ 1.03
CLK3-202ENST00000395066 KCNJ11Q14654 390 aa21.47■■□□□ 1.03
CLK3-202ENST00000395066 OR6B2Q6IFH4 312 aa21.47■■□□□ 1.03
CLK3-202ENST00000395066 DEFB132Q7Z7B7 95 aa21.47■■□□□ 1.03
CLK3-202ENST00000395066 CFAP61Q8NHU2 1237 aa21.47■■□□□ 1.03
CLK3-202ENST00000395066 SLC44A1Q8WWI5 657 aa21.47■■□□□ 1.03
CLK3-202ENST00000395066 CPB2Q96IY4 423 aa21.47■■□□□ 1.03
CLK3-202ENST00000395066 FETUBQ9UGM5 382 aa21.47■■□□□ 1.03
CLK3-202ENST00000395066 SMIM24O75264 130 aa21.46■■□□□ 1.03
CLK3-202ENST00000395066 MXD4Q14582 209 aaPredicted RBP21.46■■□□□ 1.03
CLK3-202ENST00000395066 RCN1Q15293 331 aa21.46■■□□□ 1.03
CLK3-202ENST00000395066 RFX8Q6ZV50 586 aa21.46■■□□□ 1.03
CLK3-202ENST00000395066 SH2D5Q6ZV89 423 aa21.46■■□□□ 1.03
CLK3-202ENST00000395066 ALYREFQ86V81 257 aaKnown RBP21.46■■□□□ 1.03
CLK3-202ENST00000395066 FAM136AQ96C01 138 aa21.46■■□□□ 1.03
CLK3-202ENST00000395066 TMEM176AQ96HP8 235 aa21.46■■□□□ 1.03
CLK3-202ENST00000395066 APOPT1Q96IL0 206 aa21.46■■□□□ 1.03
CLK3-202ENST00000395066 GPR20Q99678 358 aa21.46■■□□□ 1.03
CLK3-202ENST00000395066 IQANK1A0A1B0GTG1 560 aa21.46■■□□□ 1.03
CLK3-202ENST00000395066 TRIM49D1C9J1S8 452 aa21.46■■□□□ 1.03
CLK3-202ENST00000395066 F5H423 210 aaPredicted RBP21.46■■□□□ 1.03
CLK3-202ENST00000395066 ACKR2O00590 384 aa21.46■■□□□ 1.03
CLK3-202ENST00000395066 PDGFRAP16234 1089 aa21.46■■□□□ 1.03
CLK3-202ENST00000395066 RPS12P25398 132 aaKnown RBP21.46■■□□□ 1.03
CLK3-202ENST00000395066 NOMO1Q15155 1222 aa21.46■■□□□ 1.03
CLK3-202ENST00000395066 MDH1BQ5I0G3 518 aa21.46■■□□□ 1.03
CLK3-202ENST00000395066 ZNF772Q68DY9 489 aaPredicted RBP21.46■■□□□ 1.03
CLK3-202ENST00000395066 RINLQ6ZS11 566 aa21.46■■□□□ 1.03
CLK3-202ENST00000395066 PTCD3Q96EY7 689 aaKnown RBP21.46■■□□□ 1.03
CLK3-202ENST00000395066 MCRS1Q96EZ8 462 aa21.46■■□□□ 1.03
CLK3-202ENST00000395066 TUBB6Q9BUF5 446 aa21.46■■□□□ 1.03
CLK3-202ENST00000395066 MAGEB5Q9BZ81 275 aa21.46■■□□□ 1.03
CLK3-202ENST00000395066 SLC13A1Q9BZW2 595 aa21.46■■□□□ 1.03
CLK3-202ENST00000395066 CYB561D2O14569 222 aa21.45■■□□□ 1.02
CLK3-202ENST00000395066 NDC80O14777 642 aa21.45■■□□□ 1.02
CLK3-202ENST00000395066 CILPO75339 1184 aa21.45■■□□□ 1.02
CLK3-202ENST00000395066 TOP3BO95985 862 aaKnown RBP21.45■■□□□ 1.02
CLK3-202ENST00000395066 HMGCRP04035 888 aa21.45■■□□□ 1.02
CLK3-202ENST00000395066 MYL2P10916 166 aa21.45■■□□□ 1.02
CLK3-202ENST00000395066 RBL1P28749 1068 aa21.45■■□□□ 1.02
CLK3-202ENST00000395066 YWHAZP63104 245 aaKnown RBP21.45■■□□□ 1.02
CLK3-202ENST00000395066 PRKD1Q15139 912 aaPredicted RBP21.45■■□□□ 1.02
CLK3-202ENST00000395066 SURF1Q15526 300 aa21.45■■□□□ 1.02
CLK3-202ENST00000395066 SNX30Q5VWJ9 437 aa21.45■■□□□ 1.02
CLK3-202ENST00000395066 CES4AQ5XG92 561 aa21.45■■□□□ 1.02
CLK3-202ENST00000395066 EFCAB12Q6NXP0 572 aa21.45■■□□□ 1.02
CLK3-202ENST00000395066 IRGCQ6NXR0 463 aa21.45■■□□□ 1.02
CLK3-202ENST00000395066 LBX2Q6XYB7 198 aa21.45■■□□□ 1.02
CLK3-202ENST00000395066 FAM183BPQ6ZVS7 135 aa21.45■■□□□ 1.02
CLK3-202ENST00000395066 RSAD1Q9HA92 442 aa21.45■■□□□ 1.02
CLK3-202ENST00000395066 NR2E3Q9Y5X4 410 aa21.45■■□□□ 1.02
CLK3-202ENST00000395066 GSC2O15499 205 aa21.45■■□□□ 1.02
CLK3-202ENST00000395066 DLDP09622 509 aaKnown RBP21.45■■□□□ 1.02
CLK3-202ENST00000395066 DHRS4L1P0CG22 281 aa21.45■■□□□ 1.02
CLK3-202ENST00000395066 CA9Q16790 459 aa21.45■■□□□ 1.02
CLK3-202ENST00000395066 SLC30A9Q6PML9 568 aa21.45■■□□□ 1.02
CLK3-202ENST00000395066 TRAF3IP1Q8TDR0 691 aaPredicted RBP21.45■■□□□ 1.02
CLK3-202ENST00000395066 SRPK1Q96SB4 655 aaKnown RBP21.45■■□□□ 1.02
CLK3-202ENST00000395066 PLAC1Q9HBJ0 212 aa21.45■■□□□ 1.02
CLK3-202ENST00000395066 SMYD2Q9NRG4 433 aa21.45■■□□□ 1.02
CLK3-202ENST00000395066 SSC5DA1L4H1 1573 aa21.45■■□□□ 1.02
CLK3-202ENST00000395066 GYG2O15488 501 aa21.44■■□□□ 1.02
CLK3-202ENST00000395066 ZBTB7AO95365 584 aa21.44■■□□□ 1.02
CLK3-202ENST00000395066 APRTP07741 180 aa21.44■■□□□ 1.02
CLK3-202ENST00000395066 STAG3L1P0CL83 205 aa21.44■■□□□ 1.02
CLK3-202ENST00000395066 EDNRBP24530 442 aa21.44■■□□□ 1.02
CLK3-202ENST00000395066 SERPINB4P48594 390 aa21.44■■□□□ 1.02
CLK3-202ENST00000395066 MBTD1Q05BQ5 628 aa21.44■■□□□ 1.02
CLK3-202ENST00000395066 SMAD1Q15797 465 aaKnown RBP21.44■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms