RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 BSDC1Q9NW68 430 aaPredicted RBP12.22□□□□□ -0.45
SYNPO-202ENST00000394243 SMIM31A0A1B0GVY4 71 aa12.22□□□□□ -0.45
SYNPO-202ENST00000394243 EFCAB10A6NFE3 127 aa12.22□□□□□ -0.45
SYNPO-202ENST00000394243 FDFT1P37268 417 aa12.22□□□□□ -0.45
SYNPO-202ENST00000394243 HK2P52789 917 aa12.22□□□□□ -0.45
SYNPO-202ENST00000394243 TFDP3Q5H9I0 405 aa12.22□□□□□ -0.45
SYNPO-202ENST00000394243 UBA3Q8TBC4 463 aa12.22□□□□□ -0.45
SYNPO-202ENST00000394243 TINF2Q9BSI4 451 aa12.22□□□□□ -0.45
SYNPO-202ENST00000394243 TMEM121Q9BTD3 319 aa12.22□□□□□ -0.45
SYNPO-202ENST00000394243 KIAA1683Q9H0B3 1180 aa12.22□□□□□ -0.45
SYNPO-202ENST00000394243 OSGEPQ9NPF4 335 aa12.22□□□□□ -0.45
SYNPO-202ENST00000394243 ADGBQ8N7X0 1667 aa12.22□□□□□ -0.45
SYNPO-202ENST00000394243 PIK3CDO00329 1044 aa12.22□□□□□ -0.45
SYNPO-202ENST00000394243 UBDO15205 165 aa12.22□□□□□ -0.45
SYNPO-202ENST00000394243 MT-CO1P00395 513 aa12.22□□□□□ -0.45
SYNPO-202ENST00000394243 HLA-DRAP01903 254 aa12.22□□□□□ -0.45
SYNPO-202ENST00000394243 ZNF677Q86XU0 584 aa12.22□□□□□ -0.45
SYNPO-202ENST00000394243 OSCP1Q8WVF1 389 aa12.22□□□□□ -0.45
SYNPO-202ENST00000394243 CROTQ9UKG9 612 aa12.22□□□□□ -0.45
SYNPO-202ENST00000394243 GTF3C4Q9UKN8 822 aa12.22□□□□□ -0.45
SYNPO-202ENST00000394243 RBMX2Q9Y388 322 aaKnown RBP12.22□□□□□ -0.45
SYNPO-202ENST00000394243 ITGA4P13612 1032 aa12.21□□□□□ -0.45
SYNPO-202ENST00000394243 ALDH1A3P47895 512 aa12.21□□□□□ -0.45
SYNPO-202ENST00000394243 CASP5P51878 434 aa12.21□□□□□ -0.45
SYNPO-202ENST00000394243 CDK16Q00536 496 aa12.21□□□□□ -0.45
SYNPO-202ENST00000394243 LGALS3BPQ08380 585 aa12.21□□□□□ -0.45
SYNPO-202ENST00000394243 FCHO2Q0JRZ9 810 aa12.21□□□□□ -0.45
SYNPO-202ENST00000394243 ZRANB3Q5FWF4 1079 aa12.21□□□□□ -0.45
SYNPO-202ENST00000394243 STRA8Q7Z7C7 330 aa12.21□□□□□ -0.45
SYNPO-202ENST00000394243 EPHX4Q8IUS5 362 aa12.21□□□□□ -0.45
SYNPO-202ENST00000394243 DENND6AQ8IWF6 608 aa12.21□□□□□ -0.45
SYNPO-202ENST00000394243 KCTD17Q8N5Z5 321 aa12.21□□□□□ -0.45
SYNPO-202ENST00000394243 TRPC4APQ8TEL6 797 aa12.21□□□□□ -0.45
SYNPO-202ENST00000394243 FEM1BQ9UK73 627 aa12.21□□□□□ -0.45
SYNPO-202ENST00000394243 SDR42E2A6NKP2 422 aa12.21□□□□□ -0.45
SYNPO-202ENST00000394243 MAP2K7O14733 419 aa12.21□□□□□ -0.45
SYNPO-202ENST00000394243 TIMM44O43615 452 aa12.21□□□□□ -0.45
SYNPO-202ENST00000394243 SRP54P61011 504 aaKnown RBP12.21□□□□□ -0.45
SYNPO-202ENST00000394243 MCL1Q07820 350 aa12.21□□□□□ -0.45
SYNPO-202ENST00000394243 ATAD3BQ5T9A4 648 aa12.21□□□□□ -0.45
SYNPO-202ENST00000394243 DDI2Q5TDH0 399 aa12.21□□□□□ -0.45
SYNPO-202ENST00000394243 NSMCE2Q96MF7 247 aa12.21□□□□□ -0.45
SYNPO-202ENST00000394243 PPP1R10Q96QC0 940 aaKnown RBP12.21□□□□□ -0.45
SYNPO-202ENST00000394243 FUCA2Q9BTY2 467 aa12.21□□□□□ -0.45
SYNPO-202ENST00000394243 WWOXQ9NZC7 414 aa12.21□□□□□ -0.45
SYNPO-202ENST00000394243 SH3GLB1Q9Y371 365 aa12.21□□□□□ -0.45
SYNPO-202ENST00000394243 HBS1LQ9Y450 684 aaKnown RBP12.21□□□□□ -0.45
SYNPO-202ENST00000394243 LOC100506127A0A0U1RQW1 187 aa12.21□□□□□ -0.45
SYNPO-202ENST00000394243 POLRMTO00411 1230 aaKnown RBP12.21□□□□□ -0.45
SYNPO-202ENST00000394243 SGPL1O95470 568 aa12.21□□□□□ -0.45
SYNPO-202ENST00000394243 ATP6V1C1P21283 382 aa12.21□□□□□ -0.45
SYNPO-202ENST00000394243 PTENP60484 403 aa12.21□□□□□ -0.45
SYNPO-202ENST00000394243 ABATP80404 500 aa12.21□□□□□ -0.45
SYNPO-202ENST00000394243 VN1R5Q7Z5H4 357 aa12.21□□□□□ -0.45
SYNPO-202ENST00000394243 EXOC3L1Q86VI1 746 aa12.21□□□□□ -0.45
SYNPO-202ENST00000394243 LRRC49Q8IUZ0 686 aa12.21□□□□□ -0.45
SYNPO-202ENST00000394243 RNF145Q96MT1 663 aa12.21□□□□□ -0.45
SYNPO-202ENST00000394243 NDNQ99608 321 aa12.21□□□□□ -0.45
SYNPO-202ENST00000394243 ZNF180Q9UJW8 692 aa12.21□□□□□ -0.45
SYNPO-202ENST00000394243 CHI3L1P36222 383 aaPredicted RBP12.21□□□□□ -0.45
SYNPO-202ENST00000394243 PURAQ00577 322 aaKnown RBP12.21□□□□□ -0.45
SYNPO-202ENST00000394243 ALFQ53S48 1182 aa12.21□□□□□ -0.45
SYNPO-202ENST00000394243 IKBIPQ70UQ0 350 aa12.21□□□□□ -0.45
SYNPO-202ENST00000394243 C11orf96Q7Z7L8 435 aa12.21□□□□□ -0.45
SYNPO-202ENST00000394243 ZBTB46Q86UZ6 589 aa12.21□□□□□ -0.45
SYNPO-202ENST00000394243 GTF2A1LQ9UNN4 478 aa12.21□□□□□ -0.45
SYNPO-202ENST00000394243 AGRPO00253 132 aa12.21□□□□□ -0.46
SYNPO-202ENST00000394243 PDGFRBP09619 1106 aa12.21□□□□□ -0.46
SYNPO-202ENST00000394243 FDPSP14324 419 aaKnown RBP12.21□□□□□ -0.46
SYNPO-202ENST00000394243 RAD51Q06609 339 aa12.21□□□□□ -0.46
SYNPO-202ENST00000394243 KRT78Q8N1N4 520 aa12.21□□□□□ -0.46
SYNPO-202ENST00000394243 BHLHE22Q8NFJ8 381 aaPredicted RBP12.21□□□□□ -0.46
SYNPO-202ENST00000394243 OR7A2PQ8NGA2 310 aa12.21□□□□□ -0.46
SYNPO-202ENST00000394243 PSMA8Q8TAA3 256 aa12.21□□□□□ -0.46
SYNPO-202ENST00000394243 PPP1R2P1Q96PQ5 205 aa12.21□□□□□ -0.46
SYNPO-202ENST00000394243 CNTFP26441 200 aa12.21□□□□□ -0.46
SYNPO-202ENST00000394243 WDR48Q8TAF3 677 aa12.21□□□□□ -0.46
SYNPO-202ENST00000394243 SNX9Q9Y5X1 595 aa12.21□□□□□ -0.46
SYNPO-202ENST00000394243 CDC16Q13042 620 aa12.2□□□□□ -0.46
SYNPO-202ENST00000394243 DCAF6Q58WW2 860 aa12.2□□□□□ -0.46
SYNPO-202ENST00000394243 LINC00523Q86TU6 105 aa12.2□□□□□ -0.46
SYNPO-202ENST00000394243 CCDC33Q8N5R6 958 aa12.2□□□□□ -0.46
SYNPO-202ENST00000394243 RNF149Q8NC42 400 aa12.2□□□□□ -0.46
SYNPO-202ENST00000394243 NSUN6Q8TEA1 469 aaKnown RBP12.2□□□□□ -0.46
SYNPO-202ENST00000394243 RIBC2Q9H4K1 309 aa12.2□□□□□ -0.46
SYNPO-202ENST00000394243 RSL24D1Q9UHA3 163 aaKnown RBP12.2□□□□□ -0.46
SYNPO-202ENST00000394243 FLT1P17948 1338 aa12.2□□□□□ -0.46
SYNPO-202ENST00000394243 ZNF609O15014 1411 aa12.2□□□□□ -0.46
SYNPO-202ENST00000394243 CPSF4O95639 269 aaKnown RBP12.2□□□□□ -0.46
SYNPO-202ENST00000394243 MYL3P08590 195 aa12.2□□□□□ -0.46
SYNPO-202ENST00000394243 MZF1P28698 734 aaPredicted RBP12.2□□□□□ -0.46
SYNPO-202ENST00000394243 GRIK1P39086 918 aa12.2□□□□□ -0.46
SYNPO-202ENST00000394243 C2CD6Q53TS8 623 aa12.2□□□□□ -0.46
SYNPO-202ENST00000394243 SUSD4Q5VX71 490 aa12.2□□□□□ -0.46
SYNPO-202ENST00000394243 CNPY3Q9BT09 278 aa12.2□□□□□ -0.46
SYNPO-202ENST00000394243 UBXN6Q9BZV1 441 aa12.2□□□□□ -0.46
SYNPO-202ENST00000394243 THAP1Q9NVV9 213 aa12.2□□□□□ -0.46
SYNPO-202ENST00000394243 FOXN3O00409 490 aaPredicted RBP12.2□□□□□ -0.46
SYNPO-202ENST00000394243 DCXO43602 365 aa12.2□□□□□ -0.46
SYNPO-202ENST00000394243 PMPCBO75439 489 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms