RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 RRN3Q9NYV6 651 aa19.02■□□□□ 0.64
CCDC88C-203ENST00000389856 USP18Q9UMW8 372 aa19.02■□□□□ 0.64
CCDC88C-203ENST00000389856 LRRD1A4D1F6 860 aa19.01■□□□□ 0.63
CCDC88C-203ENST00000389856 SRRM3A6NNA2 597 aaPredicted RBP19.01■□□□□ 0.63
CCDC88C-203ENST00000389856 GRAP2O75791 330 aa19.01■□□□□ 0.63
CCDC88C-203ENST00000389856 DGKIO75912 1065 aa19.01■□□□□ 0.63
CCDC88C-203ENST00000389856 GALTP07902 379 aa19.01■□□□□ 0.63
CCDC88C-203ENST00000389856 FGFR3P22607 806 aa19.01■□□□□ 0.63
CCDC88C-203ENST00000389856 MIPP30301 263 aa19.01■□□□□ 0.63
CCDC88C-203ENST00000389856 FLT3P36888 993 aa19.01■□□□□ 0.63
CCDC88C-203ENST00000389856 MATKP42679 507 aa19.01■□□□□ 0.63
CCDC88C-203ENST00000389856 FNTAP49354 379 aa19.01■□□□□ 0.63
CCDC88C-203ENST00000389856 EIF3BP55884 814 aaKnown RBP19.01■□□□□ 0.63
CCDC88C-203ENST00000389856 YWHAZP63104 245 aaKnown RBP19.01■□□□□ 0.63
CCDC88C-203ENST00000389856 CTXN3Q4LDR2 81 aa19.01■□□□□ 0.63
CCDC88C-203ENST00000389856 TFDP3Q5H9I0 405 aa19.01■□□□□ 0.63
CCDC88C-203ENST00000389856 KDM7AQ6ZMT4 941 aa19.01■□□□□ 0.63
CCDC88C-203ENST00000389856 MAP7D3Q8IWC1 876 aa19.01■□□□□ 0.63
CCDC88C-203ENST00000389856 SCML4Q8N228 414 aa19.01■□□□□ 0.63
CCDC88C-203ENST00000389856 ARFGAP2Q8N6H7 521 aa19.01■□□□□ 0.63
CCDC88C-203ENST00000389856 C12orf50Q8NA57 414 aaPredicted RBP19.01■□□□□ 0.63
CCDC88C-203ENST00000389856 TEKT4Q8WW24 435 aa19.01■□□□□ 0.63
CCDC88C-203ENST00000389856 MAGOHBQ96A72 148 aaKnown RBP19.01■□□□□ 0.63
CCDC88C-203ENST00000389856 FAM149B1Q96BN6 582 aa19.01■□□□□ 0.63
CCDC88C-203ENST00000389856 SMOQ99835 787 aa19.01■□□□□ 0.63
CCDC88C-203ENST00000389856 CAPS2Q9BXY5 557 aa19.01■□□□□ 0.63
CCDC88C-203ENST00000389856 TMEM51Q9NW97 253 aa19.01■□□□□ 0.63
CCDC88C-203ENST00000389856 DAPK3O43293 454 aa19■□□□□ 0.63
CCDC88C-203ENST00000389856 UPP2O95045 317 aa19■□□□□ 0.63
CCDC88C-203ENST00000389856 TRUB2O95900 331 aaKnown RBP19■□□□□ 0.63
CCDC88C-203ENST00000389856 HSD17B3P37058 310 aa19■□□□□ 0.63
CCDC88C-203ENST00000389856 GATMP50440 423 aa19■□□□□ 0.63
CCDC88C-203ENST00000389856 BCAR1P56945 870 aa19■□□□□ 0.63
CCDC88C-203ENST00000389856 CCDC14Q49A88 953 aa19■□□□□ 0.63
CCDC88C-203ENST00000389856 TTMPQ5BVD1 217 aa19■□□□□ 0.63
CCDC88C-203ENST00000389856 RAB41Q5JT25 222 aa19■□□□□ 0.63
CCDC88C-203ENST00000389856 VSTM1Q6UX27 236 aa19■□□□□ 0.63
CCDC88C-203ENST00000389856 LIN28BQ6ZN17 250 aaKnown RBP eCLIP19■□□□□ 0.63
CCDC88C-203ENST00000389856 ANKS3Q6ZW76 656 aa19■□□□□ 0.63
CCDC88C-203ENST00000389856 STRADAQ7RTN6 431 aa19■□□□□ 0.63
CCDC88C-203ENST00000389856 CROCCP2Q86T23 111 aa19■□□□□ 0.63
CCDC88C-203ENST00000389856 GRK7Q8WTQ7 553 aa19■□□□□ 0.63
CCDC88C-203ENST00000389856 FAM172AQ8WUF8 416 aa19■□□□□ 0.63
CCDC88C-203ENST00000389856 TOP1MTQ969P6 601 aa19■□□□□ 0.63
CCDC88C-203ENST00000389856 ATP6V1G3Q96LB4 118 aa19■□□□□ 0.63
CCDC88C-203ENST00000389856 SLITRK1Q96PX8 696 aa19■□□□□ 0.63
CCDC88C-203ENST00000389856 DDX23Q9BUQ8 820 aaKnown RBP19■□□□□ 0.63
CCDC88C-203ENST00000389856 ZWILCHQ9H900 591 aa19■□□□□ 0.63
CCDC88C-203ENST00000389856 NGRNQ9NPE2 291 aaKnown RBP19■□□□□ 0.63
CCDC88C-203ENST00000389856 PLAAQ9Y263 795 aa19■□□□□ 0.63
CCDC88C-203ENST00000389856 TRIM66O15016 1216 aa19■□□□□ 0.63
CCDC88C-203ENST00000389856 PPFIA2O75334 1257 aa19■□□□□ 0.63
CCDC88C-203ENST00000389856 RALAP11233 206 aa19■□□□□ 0.63
CCDC88C-203ENST00000389856 BDNFP23560 247 aa19■□□□□ 0.63
CCDC88C-203ENST00000389856 NOS2P35228 1153 aa19■□□□□ 0.63
CCDC88C-203ENST00000389856 DAB2IPQ5VWQ8 1189 aa19■□□□□ 0.63
CCDC88C-203ENST00000389856 AADACL2Q6P093 401 aa19■□□□□ 0.63
CCDC88C-203ENST00000389856 SPOCD1Q6ZMY3 1216 aa19■□□□□ 0.63
CCDC88C-203ENST00000389856 ADAT2Q7Z6V5 191 aaKnown RBP19■□□□□ 0.63
CCDC88C-203ENST00000389856 CEP57Q86XR8 500 aa19■□□□□ 0.63
CCDC88C-203ENST00000389856 KCTD6Q8NC69 237 aa19■□□□□ 0.63
CCDC88C-203ENST00000389856 C2orf15Q8WU43 125 aaKnown RBP19■□□□□ 0.63
CCDC88C-203ENST00000389856 ARL8AQ96BM9 186 aa19■□□□□ 0.63
CCDC88C-203ENST00000389856 FRMD8P1Q9BZ68 369 aaPredicted RBP19■□□□□ 0.63
CCDC88C-203ENST00000389856 LRRC19Q9H756 370 aa19■□□□□ 0.63
CCDC88C-203ENST00000389856 POPDC2Q9HBU9 364 aa19■□□□□ 0.63
CCDC88C-203ENST00000389856 MARCH5Q9NX47 278 aa19■□□□□ 0.63
CCDC88C-203ENST00000389856 PCDHB5Q9Y5E4 795 aa19■□□□□ 0.63
CCDC88C-203ENST00000389856 F8W810 466 aa18.99■□□□□ 0.63
CCDC88C-203ENST00000389856 CAPN9O14815 690 aa18.99■□□□□ 0.63
CCDC88C-203ENST00000389856 GABBR2O75899 941 aa18.99■□□□□ 0.63
CCDC88C-203ENST00000389856 BEST1O76090 585 aa18.99■□□□□ 0.63
CCDC88C-203ENST00000389856 ZBED1O96006 694 aa18.99■□□□□ 0.63
CCDC88C-203ENST00000389856 MYZAPP0CAP1 466 aa18.99■□□□□ 0.63
CCDC88C-203ENST00000389856 LMNB2Q03252 620 aa18.99■□□□□ 0.63
CCDC88C-203ENST00000389856 ADCY1Q08828 1119 aa18.99■□□□□ 0.63
CCDC88C-203ENST00000389856 PPIGQ13427 754 aaKnown RBP eCLIP18.99■□□□□ 0.63
CCDC88C-203ENST00000389856 MRPL58Q14197 206 aaKnown RBP18.99■□□□□ 0.63
CCDC88C-203ENST00000389856 PDK2Q15119 407 aa18.99■□□□□ 0.63
CCDC88C-203ENST00000389856 SLC25A52Q3SY17 297 aa18.99■□□□□ 0.63
CCDC88C-203ENST00000389856 SLC39A12Q504Y0 691 aa18.99■□□□□ 0.63
CCDC88C-203ENST00000389856 SPOUT1Q5T280 376 aaKnown RBP18.99■□□□□ 0.63
CCDC88C-203ENST00000389856 AGBL2Q5U5Z8 902 aa18.99■□□□□ 0.63
CCDC88C-203ENST00000389856 LRRC31Q6UY01 552 aa18.99■□□□□ 0.63
CCDC88C-203ENST00000389856 SYDE1Q6ZW31 735 aaPredicted RBP18.99■□□□□ 0.63
CCDC88C-203ENST00000389856 TMC3Q7Z5M5 1100 aa18.99■□□□□ 0.63
CCDC88C-203ENST00000389856 VSIG1Q86XK7 387 aa18.99■□□□□ 0.63
CCDC88C-203ENST00000389856 JAMLQ86YT9 394 aa18.99■□□□□ 0.63
CCDC88C-203ENST00000389856 CMTR2Q8IYT2 770 aaKnown RBP18.99■□□□□ 0.63
CCDC88C-203ENST00000389856 TTC13Q8NBP0 860 aa18.99■□□□□ 0.63
CCDC88C-203ENST00000389856 KHSRPQ92945 711 aaKnown RBP eCLIP18.99■□□□□ 0.63
CCDC88C-203ENST00000389856 SLCO2A1Q92959 643 aa18.99■□□□□ 0.63
CCDC88C-203ENST00000389856 RNF25Q96BH1 459 aaPredicted RBP18.99■□□□□ 0.63
CCDC88C-203ENST00000389856 PIWIL1Q96J94 861 aaKnown RBP18.99■□□□□ 0.63
CCDC88C-203ENST00000389856 CFAP57Q96MR6 1250 aa18.99■□□□□ 0.63
CCDC88C-203ENST00000389856 FMO2Q99518 471 aa18.99■□□□□ 0.63
CCDC88C-203ENST00000389856 TTPALQ9BTX7 342 aa18.99■□□□□ 0.63
CCDC88C-203ENST00000389856 ULBP1Q9BZM6 244 aa18.99■□□□□ 0.63
CCDC88C-203ENST00000389856 TMBIM4Q9HC24 238 aa18.99■□□□□ 0.63
CCDC88C-203ENST00000389856 IL23AQ9NPF7 189 aa18.99■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms