RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 SUMO2P61956 95 aaKnown RBP2.7□□□□□ -1.98
VPS13A-206ENST00000376646 NPY5RQ15761 445 aa2.7□□□□□ -1.98
VPS13A-206ENST00000376646 TRIM71Q2Q1W2 868 aaKnown RBP2.7□□□□□ -1.98
VPS13A-206ENST00000376646 ARHGAP29Q52LW3 1261 aa2.7□□□□□ -1.98
VPS13A-206ENST00000376646 HSP90AB2PQ58FF8 381 aa2.7□□□□□ -1.98
VPS13A-206ENST00000376646 IRF2BP2Q7Z5L9 587 aa2.7□□□□□ -1.98
VPS13A-206ENST00000376646 SESTD1Q86VW0 696 aa2.7□□□□□ -1.98
VPS13A-206ENST00000376646 CHPFQ8IZ52 775 aa2.7□□□□□ -1.98
VPS13A-206ENST00000376646 FAM156AQ8NDB6 213 aa2.7□□□□□ -1.98
VPS13A-206ENST00000376646 OSR1Q8TAX0 266 aaPredicted RBP2.7□□□□□ -1.98
VPS13A-206ENST00000376646 ADAMTS18Q8TE60 1221 aa2.7□□□□□ -1.98
VPS13A-206ENST00000376646 CCDC17Q96LX7 622 aa2.7□□□□□ -1.98
VPS13A-206ENST00000376646 MTMR4Q9NYA4 1195 aa2.7□□□□□ -1.98
VPS13A-206ENST00000376646 COL20A1Q9P218 1284 aa2.7□□□□□ -1.98
VPS13A-206ENST00000376646 MID2Q9UJV3 735 aa2.7□□□□□ -1.98
VPS13A-206ENST00000376646 LOC102723971A0A1B0GUV8 181 aa2.69□□□□□ -1.98
VPS13A-206ENST00000376646 PIAS2O75928 621 aa2.69□□□□□ -1.98
VPS13A-206ENST00000376646 PGDP52209 483 aa2.69□□□□□ -1.98
VPS13A-206ENST00000376646 YPEL5P62699 121 aa2.69□□□□□ -1.98
VPS13A-206ENST00000376646 ZNF91Q05481 1191 aa2.69□□□□□ -1.98
VPS13A-206ENST00000376646 FHL1Q13642 323 aa2.69□□□□□ -1.98
VPS13A-206ENST00000376646 TRIP6Q15654 476 aaKnown RBP2.69□□□□□ -1.98
VPS13A-206ENST00000376646 TMEM65Q6PI78 240 aa2.69□□□□□ -1.98
VPS13A-206ENST00000376646 DCDC5Q6ZRR9 648 aa2.69□□□□□ -1.98
VPS13A-206ENST00000376646 C14orf80Q86SX3 495 aa2.69□□□□□ -1.98
VPS13A-206ENST00000376646 SFTPA1Q8IWL2 248 aa2.69□□□□□ -1.98
VPS13A-206ENST00000376646 MAP4K1Q92918 833 aa2.69□□□□□ -1.98
VPS13A-206ENST00000376646 RSPRY1Q96DX4 576 aa2.69□□□□□ -1.98
VPS13A-206ENST00000376646 FYTTD1Q96QD9 318 aaKnown RBP2.69□□□□□ -1.98
VPS13A-206ENST00000376646 XPNPEP3Q9NQH7 507 aa2.69□□□□□ -1.98
VPS13A-206ENST00000376646 MGAT4CQ9UBM8 478 aa2.69□□□□□ -1.98
VPS13A-206ENST00000376646 TPCN1Q9ULQ1 816 aa2.69□□□□□ -1.98
VPS13A-206ENST00000376646 MUC5BQ9HC84 5762 aaPredicted RBP2.69□□□□□ -1.98
VPS13A-206ENST00000376646 FAM227AF5H4B4 570 aa2.68□□□□□ -1.98
VPS13A-206ENST00000376646 CA12O43570 354 aa2.68□□□□□ -1.98
VPS13A-206ENST00000376646 MAP4K4O95819 1239 aaPredicted RBP2.68□□□□□ -1.98
VPS13A-206ENST00000376646 PARP1P09874 1014 aaKnown RBP2.68□□□□□ -1.98
VPS13A-206ENST00000376646 PRF1P14222 555 aa2.68□□□□□ -1.98
VPS13A-206ENST00000376646 ATF7P17544 494 aaPredicted RBP2.68□□□□□ -1.98
VPS13A-206ENST00000376646 MTHFSP49914 203 aa2.68□□□□□ -1.98
VPS13A-206ENST00000376646 GATMP50440 423 aa2.68□□□□□ -1.98
VPS13A-206ENST00000376646 CCT4P50991 539 aaKnown RBP2.68□□□□□ -1.98
VPS13A-206ENST00000376646 TIRAPP58753 221 aa2.68□□□□□ -1.98
VPS13A-206ENST00000376646 FMO1Q01740 532 aa2.68□□□□□ -1.98
VPS13A-206ENST00000376646 SLC14A1Q13336 389 aa2.68□□□□□ -1.98
VPS13A-206ENST00000376646 CNGA2Q16280 664 aa2.68□□□□□ -1.98
VPS13A-206ENST00000376646 ZNF750Q32MQ0 723 aa2.68□□□□□ -1.98
VPS13A-206ENST00000376646 FAM102BQ5T8I3 360 aa2.68□□□□□ -1.98
VPS13A-206ENST00000376646 MEX3CQ5U5Q3 659 aaKnown RBP2.68□□□□□ -1.98
VPS13A-206ENST00000376646 MTHFD1LQ6UB35 978 aa2.68□□□□□ -1.98
VPS13A-206ENST00000376646 ZNF813Q6ZN06 617 aa2.68□□□□□ -1.98
VPS13A-206ENST00000376646 CCDC149Q6ZUS6 474 aa2.68□□□□□ -1.98
VPS13A-206ENST00000376646 MYO1HQ8N1T3 1032 aa2.68□□□□□ -1.98
VPS13A-206ENST00000376646 IGFBPL1Q8WX77 278 aa2.68□□□□□ -1.98
VPS13A-206ENST00000376646 PRR11Q96HE9 360 aaPredicted RBP2.68□□□□□ -1.98
VPS13A-206ENST00000376646 HS6ST2Q96MM7 605 aa2.68□□□□□ -1.98
VPS13A-206ENST00000376646 FAM118BQ9BPY3 351 aa2.68□□□□□ -1.98
VPS13A-206ENST00000376646 WACQ9BTA9 647 aa2.68□□□□□ -1.98
VPS13A-206ENST00000376646 AFF4Q9UHB7 1163 aaKnown RBP2.68□□□□□ -1.98
VPS13A-206ENST00000376646 ITGB1BP2Q9UKP3 347 aa2.68□□□□□ -1.98
VPS13A-206ENST00000376646 RIMKLBQ9ULI2 386 aa2.68□□□□□ -1.98
VPS13A-206ENST00000376646 LOC105378220A0A1B0GUY1 285 aaPredicted RBP2.68□□□□□ -1.98
VPS13A-206ENST00000376646 TRIM38O00635 465 aa2.68□□□□□ -1.98
VPS13A-206ENST00000376646 DSCR3O14972 297 aa2.68□□□□□ -1.98
VPS13A-206ENST00000376646 A1BGP04217 495 aa2.68□□□□□ -1.98
VPS13A-206ENST00000376646 KLRC1P26715 233 aa2.68□□□□□ -1.98
VPS13A-206ENST00000376646 EPHA3P29320 983 aa2.68□□□□□ -1.98
VPS13A-206ENST00000376646 LINC00205P59089 165 aa2.68□□□□□ -1.98
VPS13A-206ENST00000376646 TIAL1Q01085 375 aaKnown RBP eCLIP2.68□□□□□ -1.98
VPS13A-206ENST00000376646 GRM3Q14832 879 aa2.68□□□□□ -1.98
VPS13A-206ENST00000376646 LARS2Q15031 903 aaKnown RBP2.68□□□□□ -1.98
VPS13A-206ENST00000376646 RBMS2Q15434 407 aaKnown RBP2.68□□□□□ -1.98
VPS13A-206ENST00000376646 INSCQ1MX18 579 aa2.68□□□□□ -1.98
VPS13A-206ENST00000376646 TMTC4Q5T4D3 741 aa2.68□□□□□ -1.98
VPS13A-206ENST00000376646 PXDC1Q5TGL8 231 aa2.68□□□□□ -1.98
VPS13A-206ENST00000376646 CCDC181Q5TID7 509 aa2.68□□□□□ -1.98
VPS13A-206ENST00000376646 RANBP10Q6VN20 620 aa2.68□□□□□ -1.98
VPS13A-206ENST00000376646 USP49Q70CQ1 688 aa2.68□□□□□ -1.98
VPS13A-206ENST00000376646 UNC13DQ70J99 1090 aa2.68□□□□□ -1.98
VPS13A-206ENST00000376646 LINC01465Q8N7H1 131 aa2.68□□□□□ -1.98
VPS13A-206ENST00000376646 APOL5Q9BWW9 433 aa2.68□□□□□ -1.98
VPS13A-206ENST00000376646 CHST8Q9H2A9 424 aa2.68□□□□□ -1.98
VPS13A-206ENST00000376646 MBD3L4A6NDZ8 208 aaPredicted RBP2.67□□□□□ -1.98
VPS13A-206ENST00000376646 MBD3L3A6NE82 208 aaPredicted RBP2.67□□□□□ -1.98
VPS13A-206ENST00000376646 PROB1E7EW31 1015 aa2.67□□□□□ -1.98
VPS13A-206ENST00000376646 F8W8V4 182 aa2.67□□□□□ -1.98
VPS13A-206ENST00000376646 CLIC1O00299 241 aa2.67□□□□□ -1.98
VPS13A-206ENST00000376646 PRAMEF2O60811 474 aa2.67□□□□□ -1.98
VPS13A-206ENST00000376646 ARHGEF7Q14155 803 aa2.67□□□□□ -1.98
VPS13A-206ENST00000376646 SLC29A2Q14542 456 aa2.67□□□□□ -1.98
VPS13A-206ENST00000376646 KCNB1Q14721 858 aa2.67□□□□□ -1.98
VPS13A-206ENST00000376646 MFSD13AQ14CX5 517 aa2.67□□□□□ -1.98
VPS13A-206ENST00000376646 MINDY4Q4G0A6 757 aa2.67□□□□□ -1.98
VPS13A-206ENST00000376646 RNF220Q5VTB9 566 aa2.67□□□□□ -1.98
VPS13A-206ENST00000376646 CXorf57Q6NSI4 855 aaKnown RBP2.67□□□□□ -1.98
VPS13A-206ENST00000376646 CLEC9AQ6UXN8 241 aa2.67□□□□□ -1.98
VPS13A-206ENST00000376646 MAGEB6Q8N7X4 407 aa2.67□□□□□ -1.98
VPS13A-206ENST00000376646 ZNF398Q8TD17 642 aa2.67□□□□□ -1.98
VPS13A-206ENST00000376646 NMD3Q96D46 503 aaKnown RBP2.67□□□□□ -1.98
VPS13A-206ENST00000376646 HMCESQ96FZ2 354 aa2.67□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms