RNA–Protein interactions for RNA: ENST00000375340.10

SMC1A-202, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 1 (best) BASIC

Gene SMC1A, Length 9,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-202ENST00000375340 CTSHP09668 335 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 C1QBPQ07021 282 aaKnown RBP6.77□□□□□ -1.33
SMC1A-202ENST00000375340 C4orf19Q8IY42 314 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 CATSPER1Q8NEC5 780 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 NRBF2Q96F24 287 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 PIF1Q9H611 641 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 OLA1Q9NTK5 396 aaKnown RBP6.77□□□□□ -1.33
SMC1A-202ENST00000375340 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP6.77□□□□□ -1.33
SMC1A-202ENST00000375340 SLC17A7Q9P2U7 560 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 SYCE1LA8MT33 242 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 FAM155BO75949 473 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 MGAT1P26572 445 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 FNBP1LQ5T0N5 605 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 SNX30Q5VWJ9 437 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 VPS39Q96JC1 886 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 C17orf80Q9BSJ5 609 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 SLCO1B3Q9NPD5 702 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 DCDC2Q9UHG0 476 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 CYP3A4P08684 503 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 MUTP22033 750 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 MMP13P45452 471 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 ZCWPW2Q504Y3 356 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 EFHC1Q5JVL4 640 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 RNF43Q68DV7 783 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 POTEAQ6S8J7 498 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 IFNEQ86WN2 208 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 FAM71AQ8IYT1 594 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 THEM5Q8N1Q8 247 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 WNK4Q96J92 1243 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 DCLRE1BQ9H816 532 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 TIAM2Q8IVF5 1701 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 TAF1P21675 1872 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 ARHGAP10A1A4S6 786 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 NCAM1P13591 858 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 TPH1P17752 444 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 SLC34A1Q06495 639 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 DDR1Q08345 913 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 KIZQ2M2Z5 673 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 SMARCAD1Q9H4L7 1026 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 GAKO14976 1311 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 ZC3H11AO75152 810 aaKnown RBP eCLIP6.77□□□□□ -1.33
SMC1A-202ENST00000375340 FASTKD3Q14CZ7 662 aaKnown RBP6.77□□□□□ -1.33
SMC1A-202ENST00000375340 PDK1Q15118 436 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 SLC26A11Q86WA9 606 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 ACSS2Q9NR19 701 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 STARD13Q9Y3M8 1113 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 RPS6KL1Q9Y6S9 549 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 LYPLA1O75608 230 aaPredicted RBP6.77□□□□□ -1.33
SMC1A-202ENST00000375340 ALADP13716 330 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 HIRAP54198 1017 aaPredicted RBP6.77□□□□□ -1.33
SMC1A-202ENST00000375340 PLIN5Q00G26 463 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 IMPG1Q17R60 797 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 ZNF606Q8WXB4 792 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 SEPT1Q8WYJ6 367 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 SLC10A4Q96EP9 437 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 XPNPEP3Q9NQH7 507 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 AP4E1Q9UPM8 1137 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 CDY2AQ9Y6F7 541 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 CDY1Q9Y6F8 540 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 M0QYT0 321 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 NUDT17P0C025 328 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 GFAPP14136 432 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 IL10P22301 178 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 TGFB2P61812 414 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 CYLC2Q14093 348 aaPredicted RBP6.77□□□□□ -1.33
SMC1A-202ENST00000375340 C15orf59Q2T9L4 293 aaPredicted RBP6.77□□□□□ -1.33
SMC1A-202ENST00000375340 BTBD8Q5XKL5 378 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 MIEF2Q96C03 454 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 TMEM176AQ96HP8 235 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 KCNK16Q96T55 309 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 ZBTB18Q99592 522 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP6.77□□□□□ -1.333e-6■■■■□ 21
SMC1A-202ENST00000375340 GGA3Q9NZ52 723 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 IL1RAPL1Q9NZN1 696 aa6.77□□□□□ -1.33
SMC1A-202ENST00000375340 SDR42E2A6NKP2 422 aa6.76□□□□□ -1.33
SMC1A-202ENST00000375340 LGR5O75473 907 aa6.76□□□□□ -1.33
SMC1A-202ENST00000375340 LSM8O95777 96 aaKnown RBP6.76□□□□□ -1.33
SMC1A-202ENST00000375340 SPRP35270 261 aaPredicted RBP6.76□□□□□ -1.33
SMC1A-202ENST00000375340 TSPY1Q01534 308 aa6.76□□□□□ -1.33
SMC1A-202ENST00000375340 LAMB3Q13751 1172 aa6.76□□□□□ -1.33
SMC1A-202ENST00000375340 DPYSL3Q14195 570 aa6.76□□□□□ -1.33
SMC1A-202ENST00000375340 SCUBE3Q8IX30 993 aa6.76□□□□□ -1.33
SMC1A-202ENST00000375340 MRPL40Q9NQ50 206 aaKnown RBP6.76□□□□□ -1.33
SMC1A-202ENST00000375340 PACSIN3Q9UKS6 424 aa6.76□□□□□ -1.33
SMC1A-202ENST00000375340 MYH10P35580 1976 aa6.76□□□□□ -1.33
SMC1A-202ENST00000375340 C3orf70A6NLC5 250 aaPredicted RBP6.76□□□□□ -1.33
SMC1A-202ENST00000375340 INPP5AQ14642 412 aa6.76□□□□□ -1.33
SMC1A-202ENST00000375340 MTHFD1LQ6UB35 978 aa6.76□□□□□ -1.33
SMC1A-202ENST00000375340 PARD3BQ8TEW8 1205 aa6.76□□□□□ -1.33
SMC1A-202ENST00000375340 ZNF560Q96MR9 790 aa6.76□□□□□ -1.33
SMC1A-202ENST00000375340 KREMEN1Q96MU8 473 aa6.76□□□□□ -1.33
SMC1A-202ENST00000375340 CAAP1Q9H8G2 361 aa6.76□□□□□ -1.33
SMC1A-202ENST00000375340 SIX2Q9NPC8 291 aa6.76□□□□□ -1.33
SMC1A-202ENST00000375340 GLRA3O75311 464 aa6.76□□□□□ -1.33
SMC1A-202ENST00000375340 RARBP10826 455 aa6.76□□□□□ -1.33
SMC1A-202ENST00000375340 RPL7AP62424 266 aaKnown RBP6.76□□□□□ -1.33
SMC1A-202ENST00000375340 IER5Q5VY09 327 aa6.76□□□□□ -1.33
SMC1A-202ENST00000375340 IQCKQ8N0W5 287 aa6.76□□□□□ -1.33
SMC1A-202ENST00000375340 RNF148Q8N7C7 305 aa6.76□□□□□ -1.33
SMC1A-202ENST00000375340 COLGALT1Q8NBJ5 622 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms