RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 RGS2P41220 211 aa16.43■□□□□ 0.22
COL17A1-202ENST00000369733 KCTD19Q17RG1 926 aaPredicted RBP16.43■□□□□ 0.22
COL17A1-202ENST00000369733 XRRA1Q6P2D8 792 aa16.43■□□□□ 0.22
COL17A1-202ENST00000369733 TRAF7Q6Q0C0 670 aa16.43■□□□□ 0.22
COL17A1-202ENST00000369733 NEURL4Q96JN8 1562 aa16.43■□□□□ 0.22
COL17A1-202ENST00000369733 CNPY3Q9BT09 278 aa16.43■□□□□ 0.22
COL17A1-202ENST00000369733 GRIP2Q9C0E4 1043 aa16.43■□□□□ 0.22
COL17A1-202ENST00000369733 CISHQ9NSE2 258 aa16.43■□□□□ 0.22
COL17A1-202ENST00000369733 PIN4Q9Y237 131 aaKnown RBP16.43■□□□□ 0.22
COL17A1-202ENST00000369733 ZSCAN5DPP0CG00 497 aa16.43■□□□□ 0.22
COL17A1-202ENST00000369733 CHKAP35790 457 aa16.43■□□□□ 0.22
COL17A1-202ENST00000369733 LACTB2Q53H82 288 aaPredicted RBP16.43■□□□□ 0.22
COL17A1-202ENST00000369733 B3GNT6Q6ZMB0 384 aa16.43■□□□□ 0.22
COL17A1-202ENST00000369733 NRDE2Q9H7Z3 1164 aa16.43■□□□□ 0.22
COL17A1-202ENST00000369733 MAPTP10636 758 aaKnown RBP16.42■□□□□ 0.22
COL17A1-202ENST00000369733 PPATQ06203 517 aa16.42■□□□□ 0.22
COL17A1-202ENST00000369733 PDK4Q16654 411 aa16.42■□□□□ 0.22
COL17A1-202ENST00000369733 ZFP1Q6P2D0 407 aa16.42■□□□□ 0.22
COL17A1-202ENST00000369733 CLVS1Q8IUQ0 354 aaPredicted RBP16.42■□□□□ 0.22
COL17A1-202ENST00000369733 MAGEC3Q8TD91 643 aa16.42■□□□□ 0.22
COL17A1-202ENST00000369733 GPRASP2Q96D09 838 aa16.42■□□□□ 0.22
COL17A1-202ENST00000369733 LRMDAQ9H2I8 198 aa16.42■□□□□ 0.22
COL17A1-202ENST00000369733 SMARCAD1Q9H4L7 1026 aa16.42■□□□□ 0.22
COL17A1-202ENST00000369733 ZNF556Q9HAH1 456 aa16.42■□□□□ 0.22
COL17A1-202ENST00000369733 CYP4F12Q9HCS2 524 aa16.42■□□□□ 0.22
COL17A1-202ENST00000369733 GCLCP48506 637 aaPredicted RBP16.42■□□□□ 0.22
COL17A1-202ENST00000369733 NCKAP1LP55160 1127 aa16.42■□□□□ 0.22
COL17A1-202ENST00000369733 MGAT5Q09328 741 aa16.42■□□□□ 0.22
COL17A1-202ENST00000369733 DEPDC1Q5TB30 811 aa16.42■□□□□ 0.22
COL17A1-202ENST00000369733 SERBP1Q8NC51 408 aaKnown RBP eCLIP16.42■□□□□ 0.22
COL17A1-202ENST00000369733 MYRFQ9Y2G1 1151 aa16.42■□□□□ 0.22
COL17A1-202ENST00000369733 KANSL1LA0AUZ9 987 aa16.42■□□□□ 0.22
COL17A1-202ENST00000369733 LIN7AO14910 233 aaPredicted RBP16.42■□□□□ 0.22
COL17A1-202ENST00000369733 OGTO15294 1046 aa16.42■□□□□ 0.22
COL17A1-202ENST00000369733 CYP2C8P10632 490 aa16.42■□□□□ 0.22
COL17A1-202ENST00000369733 VDRP11473 427 aa16.42■□□□□ 0.22
COL17A1-202ENST00000369733 BAG6P46379 1132 aa16.42■□□□□ 0.22
COL17A1-202ENST00000369733 CHN2P52757 468 aa16.42■□□□□ 0.22
COL17A1-202ENST00000369733 TBCELQ5QJ74 424 aa16.42■□□□□ 0.22
COL17A1-202ENST00000369733 ISLR2Q6UXK2 745 aa16.42■□□□□ 0.22
COL17A1-202ENST00000369733 VCPIP1Q96JH7 1222 aa16.42■□□□□ 0.22
COL17A1-202ENST00000369733 CHST12Q9NRB3 414 aa16.42■□□□□ 0.22
COL17A1-202ENST00000369733 AGPSO00116 658 aa16.42■□□□□ 0.22
COL17A1-202ENST00000369733 NR5A2O00482 541 aa16.42■□□□□ 0.22
COL17A1-202ENST00000369733 CLASP2O75122 1294 aaKnown RBP16.42■□□□□ 0.22
COL17A1-202ENST00000369733 WFS1O76024 890 aa16.42■□□□□ 0.22
COL17A1-202ENST00000369733 AGKQ53H12 422 aa16.42■□□□□ 0.22
COL17A1-202ENST00000369733 KATNAL2Q8IYT4 538 aa16.42■□□□□ 0.22
COL17A1-202ENST00000369733 PRMT7Q9NVM4 692 aaPredicted RBP16.42■□□□□ 0.22
COL17A1-202ENST00000369733 FAM237BA0A1B0GVD1 139 aa16.42■□□□□ 0.22
COL17A1-202ENST00000369733 ZNF839A8K0R7 811 aa16.42■□□□□ 0.22
COL17A1-202ENST00000369733 SKIV2L2P42285 1042 aaKnown RBP16.42■□□□□ 0.22
COL17A1-202ENST00000369733 RAP1GAPP47736 663 aa16.42■□□□□ 0.22
COL17A1-202ENST00000369733 CASP5P51878 434 aa16.42■□□□□ 0.22
COL17A1-202ENST00000369733 DGKDQ16760 1214 aa16.42■□□□□ 0.22
COL17A1-202ENST00000369733 SEPT12Q8IYM1 358 aa16.42■□□□□ 0.22
COL17A1-202ENST00000369733 SPIRE2Q8WWL2 714 aa16.42■□□□□ 0.22
COL17A1-202ENST00000369733 ASIC4Q96FT7 647 aa16.42■□□□□ 0.22
COL17A1-202ENST00000369733 ZCWPW1Q9H0M4 648 aa16.42■□□□□ 0.22
COL17A1-202ENST00000369733 TECPR2O15040 1411 aa16.41■□□□□ 0.22
COL17A1-202ENST00000369733 ANXA9O76027 345 aa16.41■□□□□ 0.22
COL17A1-202ENST00000369733 SLITRK3O94933 977 aa16.41■□□□□ 0.22
COL17A1-202ENST00000369733 ICAM1P05362 532 aa16.41■□□□□ 0.22
COL17A1-202ENST00000369733 GCNT1Q02742 428 aa16.41■□□□□ 0.22
COL17A1-202ENST00000369733 IRF2BP1Q8IU81 584 aa16.41■□□□□ 0.22
COL17A1-202ENST00000369733 RNF148Q8N7C7 305 aa16.41■□□□□ 0.22
COL17A1-202ENST00000369733 RIN3Q8TB24 985 aa16.41■□□□□ 0.22
COL17A1-202ENST00000369733 PYGLP06737 847 aa16.41■□□□□ 0.22
COL17A1-202ENST00000369733 MARCKSL1P49006 195 aa16.41■□□□□ 0.22
COL17A1-202ENST00000369733 CHRNB3Q05901 458 aa16.41■□□□□ 0.22
COL17A1-202ENST00000369733 DCTN2Q13561 401 aaKnown RBP16.41■□□□□ 0.22
COL17A1-202ENST00000369733 CCDC153Q494R4 210 aa16.41■□□□□ 0.22
COL17A1-202ENST00000369733 TSHZ1Q6ZSZ6 1077 aa16.41■□□□□ 0.22
COL17A1-202ENST00000369733 NCKIPSDQ9NZQ3 722 aa16.41■□□□□ 0.22
COL17A1-202ENST00000369733 FAM86B1E9PN63 330 aa16.41■□□□□ 0.22
COL17A1-202ENST00000369733 DCXO43602 365 aa16.41■□□□□ 0.22
COL17A1-202ENST00000369733 FAM86B2P0C5J1 330 aa16.41■□□□□ 0.22
COL17A1-202ENST00000369733 NFYCQ13952 458 aa16.41■□□□□ 0.22
COL17A1-202ENST00000369733 ZNF398Q8TD17 642 aa16.41■□□□□ 0.22
COL17A1-202ENST00000369733 RXFP2Q8WXD0 754 aa16.41■□□□□ 0.22
COL17A1-202ENST00000369733 THUMPD3Q9BV44 507 aaKnown RBP16.41■□□□□ 0.22
COL17A1-202ENST00000369733 LRRC19Q9H756 370 aa16.41■□□□□ 0.22
COL17A1-202ENST00000369733 CATSPERBQ9H7T0 1116 aa16.41■□□□□ 0.22
COL17A1-202ENST00000369733 ZNF70Q9UC06 446 aaPredicted RBP16.41■□□□□ 0.22
COL17A1-202ENST00000369733 FAM32AQ9Y421 112 aaKnown RBP16.41■□□□□ 0.22
COL17A1-202ENST00000369733 ATP6V1E1P36543 226 aa16.41■□□□□ 0.22
COL17A1-202ENST00000369733 GNL1P36915 607 aaPredicted RBP16.41■□□□□ 0.22
COL17A1-202ENST00000369733 GRIK1P39086 918 aa16.41■□□□□ 0.22
COL17A1-202ENST00000369733 NAMPTP43490 491 aa16.41■□□□□ 0.22
COL17A1-202ENST00000369733 MYL6P60660 151 aa16.41■□□□□ 0.22
COL17A1-202ENST00000369733 DALRD3Q5D0E6 543 aaKnown RBP16.41■□□□□ 0.22
COL17A1-202ENST00000369733 STKLD1Q8NE28 680 aa16.41■□□□□ 0.22
COL17A1-202ENST00000369733 CYP2W1Q8TAV3 490 aa16.41■□□□□ 0.22
COL17A1-202ENST00000369733 CDRT15Q96T59 188 aa16.41■□□□□ 0.22
COL17A1-202ENST00000369733 COPS7BQ9H9Q2 264 aaPredicted RBP16.41■□□□□ 0.22
COL17A1-202ENST00000369733 GPBP1L1Q9HC44 474 aaPredicted RBP16.41■□□□□ 0.22
COL17A1-202ENST00000369733 FBXO28Q9NVF7 368 aa16.41■□□□□ 0.22
COL17A1-202ENST00000369733 TJP2Q9UDY2 1190 aa16.41■□□□□ 0.22
COL17A1-202ENST00000369733 PMPCBO75439 489 aa16.4■□□□□ 0.22
COL17A1-202ENST00000369733 FCGR1AP12314 374 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms