RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 TRIM65Q6PJ69 517 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 USP45Q70EL2 814 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 OTOAQ7RTW8 1153 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 NELFCDQ8IXH7 590 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 ATP11CQ8NB49 1132 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 EXOC6Q8TAG9 804 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 C2orf15Q8WU43 125 aaKnown RBP4.25□□□□□ -1.73
USH2A-202ENST00000366942 EDAQ92838 391 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 TSPY26PQ9H489 355 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 EPB41L5Q9HCM4 733 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 UBAP1Q9NZ09 502 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 ITSN2Q9NZM3 1697 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 ARHGEF12Q9NZN5 1544 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 CTAGE15A4D2H0 777 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 GOLGA8RI6L899 631 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 MAPK13O15264 365 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 CPP00450 1065 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 CTAGE8P0CG41 777 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 CD58P19256 250 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 HOXA10P31260 410 aaPredicted RBP4.25□□□□□ -1.73
USH2A-202ENST00000366942 LONP1P36776 959 aaKnown RBP4.25□□□□□ -1.73
USH2A-202ENST00000366942 FLT3P36888 993 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 HSD17B3P37058 310 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 INPP1P49441 399 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 ZNF135P52742 658 aaPredicted RBP4.25□□□□□ -1.73
USH2A-202ENST00000366942 YWHAZP63104 245 aaKnown RBP4.25□□□□□ -1.73
USH2A-202ENST00000366942 MYL5Q02045 173 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 KLHL30Q0D2K2 578 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 ELOCQ15369 112 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 KCNA10Q16322 511 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 STX1AQ16623 288 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 ZNF423Q2M1K9 1284 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 ESCO2Q56NI9 601 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 ATXN7L2Q5T6C5 722 aaPredicted RBP4.25□□□□□ -1.73
USH2A-202ENST00000366942 NIPAL1Q6NVV3 410 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 C16orf46Q6P387 395 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 TMC5Q6UXY8 1006 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 PEG10Q86TG7 708 aaKnown RBP4.25□□□□□ -1.73
USH2A-202ENST00000366942 CTAGE6Q86UF2 777 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 CTAGE4Q8IX94 777 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 ARFGAP2Q8N6H7 521 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 KLHL23Q8NBE8 558 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 HIPK4Q8NE63 616 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 NLGN2Q8NFZ4 835 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 OR6P1Q8NGX9 317 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 SDR42E1Q8WUS8 393 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 MRRFQ96E11 262 aaKnown RBP4.25□□□□□ -1.73
USH2A-202ENST00000366942 CNDP1Q96KN2 507 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 CALR3Q96L12 384 aaKnown RBP4.25□□□□□ -1.73
USH2A-202ENST00000366942 SERPINB11Q96P15 392 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 MOV10L1Q9BXT6 1211 aaKnown RBP4.25□□□□□ -1.73
USH2A-202ENST00000366942 ANTXR1Q9H6X2 564 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 SARS2Q9NP81 518 aaKnown RBP4.25□□□□□ -1.73
USH2A-202ENST00000366942 REV1Q9UBZ9 1251 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 AGO2Q9UKV8 859 aaKnown RBP4.25□□□□□ -1.73
USH2A-202ENST00000366942 C3orf70A6NLC5 250 aaPredicted RBP4.24□□□□□ -1.73
USH2A-202ENST00000366942 KPNA5O15131 536 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 GSTA4O15217 222 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 FOXN1O15353 648 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 CYP27B1O15528 508 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 CUTAO60888 179 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 NTRK1P04629 796 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 EPHX1P07099 455 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 PSMA4P25789 261 aaKnown RBP4.24□□□□□ -1.73
USH2A-202ENST00000366942 GABRR2P28476 465 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 BLVRAP53004 296 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 SNRPFP62306 86 aaKnown RBP4.24□□□□□ -1.73
USH2A-202ENST00000366942 ADCY2Q08462 1091 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 TMEM62Q0P6H9 643 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 SGCBQ16585 318 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 SLC27A1Q6PCB7 646 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 BHLHB9Q6PI77 547 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 DYMQ7RTS9 669 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 FERMT3Q86UX7 667 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 FAM124AQ86V42 546 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 TMEM192Q8IY95 271 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 TMEM156Q8N614 296 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 ZSCAN4Q8NAM6 433 aaPredicted RBP4.24□□□□□ -1.73
USH2A-202ENST00000366942 KCTD6Q8NC69 237 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 OR14C36Q8NHC7 312 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 TSPAN17Q96FV3 270 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 TUBGCP5Q96RT8 1024 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 RNF26Q9BY78 433 aaPredicted RBP4.24□□□□□ -1.73
USH2A-202ENST00000366942 MRM3Q9HC36 420 aaKnown RBP4.24□□□□□ -1.73
USH2A-202ENST00000366942 SPHK2Q9NRA0 654 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 KCND2Q9NZV8 630 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 KCND3Q9UK17 655 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 TLX3O43711 291 aaPredicted RBP4.24□□□□□ -1.73
USH2A-202ENST00000366942 EOMESO95936 686 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 NDUFB10O96000 172 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 NFICP08651 508 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 ICAM2P13598 275 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 CDH3P22223 829 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 HSPA9P38646 679 aaKnown RBP4.24□□□□□ -1.73
USH2A-202ENST00000366942 ITGA8P53708 1063 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 COPZ1P61923 177 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 CAPRIN1Q14444 709 aaKnown RBP4.24□□□□□ -1.73
USH2A-202ENST00000366942 UGP2Q16851 508 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 ZNF776Q68DI1 518 aaPredicted RBP4.24□□□□□ -1.73
USH2A-202ENST00000366942 FBXO16Q8IX29 292 aaPredicted RBP4.24□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms