RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.78□□□□□ -0.2
SQSTM1-201ENST00000360718 KRT35Q92764 455 aa13.78□□□□□ -0.2
SQSTM1-201ENST00000360718 SUSD3Q96L08 255 aa13.78□□□□□ -0.2
SQSTM1-201ENST00000360718 GRHL1Q9NZI5 618 aa13.78□□□□□ -0.2
SQSTM1-201ENST00000360718 IP6K2Q9UHH9 426 aa13.78□□□□□ -0.2
SQSTM1-201ENST00000360718 PCDHA3Q9Y5H8 950 aa13.78□□□□□ -0.2
SQSTM1-201ENST00000360718 TBKBP1A7MCY6 615 aa13.77□□□□□ -0.21
SQSTM1-201ENST00000360718 PIK3R2O00459 728 aa13.77□□□□□ -0.21
SQSTM1-201ENST00000360718 CAPN15O75808 1086 aa13.77□□□□□ -0.21
SQSTM1-201ENST00000360718 GABBR2O75899 941 aa13.77□□□□□ -0.21
SQSTM1-201ENST00000360718 ERBB2P04626 1255 aa13.77□□□□□ -0.21
SQSTM1-201ENST00000360718 CYP11A1P05108 521 aa13.77□□□□□ -0.21
SQSTM1-201ENST00000360718 COILP38432 576 aaPredicted RBP13.77□□□□□ -0.21
SQSTM1-201ENST00000360718 SLC1A1P43005 524 aa13.77□□□□□ -0.21
SQSTM1-201ENST00000360718 GABRB2P47870 512 aa13.77□□□□□ -0.21
SQSTM1-201ENST00000360718 RWDD2BP57060 319 aa13.77□□□□□ -0.21
SQSTM1-201ENST00000360718 PAQR9Q6ZVX9 377 aa13.77□□□□□ -0.21
SQSTM1-201ENST00000360718 TMEM173Q86WV6 379 aaPredicted RBP13.77□□□□□ -0.21
SQSTM1-201ENST00000360718 SLC13A5Q86YT5 568 aaPredicted RBP13.77□□□□□ -0.21
SQSTM1-201ENST00000360718 THEM5Q8N1Q8 247 aa13.77□□□□□ -0.21
SQSTM1-201ENST00000360718 SLC2A14Q8TDB8 520 aa13.77□□□□□ -0.21
SQSTM1-201ENST00000360718 CCDC114Q96M63 670 aa13.77□□□□□ -0.21
SQSTM1-201ENST00000360718 SYT15Q9BQS2 421 aa13.77□□□□□ -0.21
SQSTM1-201ENST00000360718 CDH9Q9ULB4 789 aa13.77□□□□□ -0.21
SQSTM1-201ENST00000360718 TLDC2A0PJX2 215 aa13.76□□□□□ -0.21
SQSTM1-201ENST00000360718 GOLGA8SH3BPF8 625 aa13.76□□□□□ -0.21
SQSTM1-201ENST00000360718 TMEM189-UBE2V1I3L0A0 370 aa13.76□□□□□ -0.21
SQSTM1-201ENST00000360718 CLDN5O00501 218 aa13.76□□□□□ -0.21
SQSTM1-201ENST00000360718 NRP1O14786 923 aa13.76□□□□□ -0.21
SQSTM1-201ENST00000360718 RARGP13631 454 aa13.76□□□□□ -0.21
SQSTM1-201ENST00000360718 SLC11A1P49279 550 aa13.76□□□□□ -0.21
SQSTM1-201ENST00000360718 BCAR1P56945 870 aa13.76□□□□□ -0.21
SQSTM1-201ENST00000360718 SLC29A2Q14542 456 aa13.76□□□□□ -0.21
SQSTM1-201ENST00000360718 C16orf59Q7L2K0 433 aa13.76□□□□□ -0.21
SQSTM1-201ENST00000360718 FUKQ8N0W3 1084 aa13.76□□□□□ -0.21
SQSTM1-201ENST00000360718 ANKS4BQ8N8V4 417 aa13.76□□□□□ -0.21
SQSTM1-201ENST00000360718 STK32AQ8WU08 396 aa13.76□□□□□ -0.21
SQSTM1-201ENST00000360718 MAIP1Q8WWC4 291 aa13.76□□□□□ -0.21
SQSTM1-201ENST00000360718 CD101Q93033 1021 aa13.76□□□□□ -0.21
SQSTM1-201ENST00000360718 TMEM209Q96SK2 561 aa13.76□□□□□ -0.21
SQSTM1-201ENST00000360718 HNRNPABQ99729 332 aaKnown RBP13.76□□□□□ -0.21
SQSTM1-201ENST00000360718 MED10Q9BTT4 135 aa13.76□□□□□ -0.21
SQSTM1-201ENST00000360718 MARCH5Q9NX47 278 aa13.76□□□□□ -0.21
SQSTM1-201ENST00000360718 PTPRDP23468 1912 aa13.76□□□□□ -0.21
SQSTM1-201ENST00000360718 MYBPHLA2RUH7 354 aa13.76□□□□□ -0.21
SQSTM1-201ENST00000360718 NT5C1B-RDH14C9J2C7 533 aa13.76□□□□□ -0.21
SQSTM1-201ENST00000360718 TADA2AO75478 443 aa13.76□□□□□ -0.21
SQSTM1-201ENST00000360718 PROSCO94903 275 aa13.76□□□□□ -0.21
SQSTM1-201ENST00000360718 SHBGP04278 402 aa13.76□□□□□ -0.21
SQSTM1-201ENST00000360718 ALDH2P05091 517 aa13.76□□□□□ -0.21
SQSTM1-201ENST00000360718 PYGMP11217 842 aa13.76□□□□□ -0.21
SQSTM1-201ENST00000360718 KRT3P12035 628 aa13.76□□□□□ -0.21
SQSTM1-201ENST00000360718 TYMPP19971 482 aa13.76□□□□□ -0.21
SQSTM1-201ENST00000360718 MMP13P45452 471 aa13.76□□□□□ -0.21
SQSTM1-201ENST00000360718 RPL21P46778 160 aaKnown RBP13.76□□□□□ -0.21
SQSTM1-201ENST00000360718 RGS7P49802 495 aa13.76□□□□□ -0.21
SQSTM1-201ENST00000360718 GSCP56915 257 aaPredicted RBP13.76□□□□□ -0.21
SQSTM1-201ENST00000360718 RPL7AP62424 266 aaKnown RBP13.76□□□□□ -0.21
SQSTM1-201ENST00000360718 CALCOCO2Q13137 446 aa13.76□□□□□ -0.21
SQSTM1-201ENST00000360718 MDH1BQ5I0G3 518 aa13.76□□□□□ -0.21
SQSTM1-201ENST00000360718 OVOS1Q6IE37 1185 aa13.76□□□□□ -0.21
SQSTM1-201ENST00000360718 PMF1Q6P1K2 205 aa13.76□□□□□ -0.21
SQSTM1-201ENST00000360718 TAOK1Q7L7X3 1001 aa13.76□□□□□ -0.21
SQSTM1-201ENST00000360718 XYLT1Q86Y38 959 aa13.76□□□□□ -0.21
SQSTM1-201ENST00000360718 CCDC13Q8IYE1 715 aa13.76□□□□□ -0.21
SQSTM1-201ENST00000360718 OR10T2Q8NGX3 314 aa13.76□□□□□ -0.21
SQSTM1-201ENST00000360718 BCL7CQ8WUZ0 217 aaPredicted RBP13.76□□□□□ -0.21
SQSTM1-201ENST00000360718 SLC35F5Q8WV83 523 aa13.76□□□□□ -0.21
SQSTM1-201ENST00000360718 RNF25Q96BH1 459 aaPredicted RBP13.76□□□□□ -0.21
SQSTM1-201ENST00000360718 MCEEQ96PE7 176 aa13.76□□□□□ -0.21
SQSTM1-201ENST00000360718 COLEC11Q9BWP8 271 aa13.76□□□□□ -0.21
SQSTM1-201ENST00000360718 ROPN1BQ9BZX4 212 aaPredicted RBP13.76□□□□□ -0.21
SQSTM1-201ENST00000360718 EPB41L4BQ9H329 900 aa13.76□□□□□ -0.21
SQSTM1-201ENST00000360718 ROPN1Q9HAT0 212 aaPredicted RBP13.76□□□□□ -0.21
SQSTM1-201ENST00000360718 PCDHB8Q9UN66 801 aa13.76□□□□□ -0.21
SQSTM1-201ENST00000360718 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.76□□□□□ -0.21
SQSTM1-201ENST00000360718 TMEM191CA6NGB0 347 aa13.75□□□□□ -0.21
SQSTM1-201ENST00000360718 SIGLEC16A6NMB1 481 aa13.75□□□□□ -0.21
SQSTM1-201ENST00000360718 DGKIO75912 1065 aa13.75□□□□□ -0.21
SQSTM1-201ENST00000360718 DRD4P21917 467 aa13.75□□□□□ -0.21
SQSTM1-201ENST00000360718 LACTB2Q53H82 288 aaPredicted RBP13.75□□□□□ -0.21
SQSTM1-201ENST00000360718 DAB2IPQ5VWQ8 1189 aa13.75□□□□□ -0.21
SQSTM1-201ENST00000360718 AADACL2Q6P093 401 aa13.75□□□□□ -0.21
SQSTM1-201ENST00000360718 FAM117BQ6P1L5 589 aa13.75□□□□□ -0.21
SQSTM1-201ENST00000360718 TMEM199Q8N511 208 aa13.75□□□□□ -0.21
SQSTM1-201ENST00000360718 C12orf50Q8NA57 414 aaPredicted RBP13.75□□□□□ -0.21
SQSTM1-201ENST00000360718 ART4Q93070 314 aa13.75□□□□□ -0.21
SQSTM1-201ENST00000360718 PIWIL1Q96J94 861 aaKnown RBP13.75□□□□□ -0.21
SQSTM1-201ENST00000360718 SELENOSQ9BQE4 189 aa13.75□□□□□ -0.21
SQSTM1-201ENST00000360718 ACBD6Q9BR61 282 aa13.75□□□□□ -0.21
SQSTM1-201ENST00000360718 KDM4CQ9H3R0 1056 aa13.75□□□□□ -0.21
SQSTM1-201ENST00000360718 CYLDQ9NQC7 956 aa13.75□□□□□ -0.21
SQSTM1-201ENST00000360718 TMEM30AQ9NV96 361 aa13.75□□□□□ -0.21
SQSTM1-201ENST00000360718 ABHD14A-ACY1A0A1B0GW23 586 aa13.75□□□□□ -0.21
SQSTM1-201ENST00000360718 E5RJQ4 531 aa13.75□□□□□ -0.21
SQSTM1-201ENST00000360718 BEST1O76090 585 aa13.75□□□□□ -0.21
SQSTM1-201ENST00000360718 ECEL1O95672 775 aa13.75□□□□□ -0.21
SQSTM1-201ENST00000360718 CHN1P15882 459 aa13.75□□□□□ -0.21
SQSTM1-201ENST00000360718 ACADSBP45954 432 aa13.75□□□□□ -0.21
SQSTM1-201ENST00000360718 MARCKSL1P49006 195 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms