RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 TLR8Q9NR97 1041 aaKnown RBP23.28■■□□□ 1.32
SHMT1-203ENST00000354098 NCANO14594 1321 aa23.28■■□□□ 1.32
SHMT1-203ENST00000354098 LAMP2P13473 410 aa23.28■■□□□ 1.32
SHMT1-203ENST00000354098 ARHGAP15Q53QZ3 475 aa23.28■■□□□ 1.32
SHMT1-203ENST00000354098 SNX30Q5VWJ9 437 aa23.28■■□□□ 1.32
SHMT1-203ENST00000354098 HFE2Q6ZVN8 426 aa23.28■■□□□ 1.32
SHMT1-203ENST00000354098 OTOP3Q7RTS5 596 aa23.28■■□□□ 1.32
SHMT1-203ENST00000354098 ARHGAP30Q7Z6I6 1101 aaPredicted RBP23.28■■□□□ 1.32
SHMT1-203ENST00000354098 MON1AQ86VX9 555 aa23.28■■□□□ 1.32
SHMT1-203ENST00000354098 PIWIL1Q96J94 861 aaKnown RBP23.28■■□□□ 1.32
SHMT1-203ENST00000354098 SLC22A12Q96S37 553 aa23.28■■□□□ 1.32
SHMT1-203ENST00000354098 CHP1Q99653 195 aa23.28■■□□□ 1.32
SHMT1-203ENST00000354098 TASP1Q9H6P5 420 aa23.28■■□□□ 1.32
SHMT1-203ENST00000354098 TAS2R14Q9NYV8 317 aa23.28■■□□□ 1.32
SHMT1-203ENST00000354098 USTQ9Y2C2 406 aa23.28■■□□□ 1.32
SHMT1-203ENST00000354098 OBSL1O75147 1896 aa23.28■■□□□ 1.32
SHMT1-203ENST00000354098 MYO16Q9Y6X6 1858 aa23.27■■□□□ 1.32
SHMT1-203ENST00000354098 CENPCQ03188 943 aa23.27■■□□□ 1.32
SHMT1-203ENST00000354098 GSE1Q14687 1217 aa23.27■■□□□ 1.32
SHMT1-203ENST00000354098 TSR1Q2NL82 804 aaKnown RBP23.27■■□□□ 1.32
SHMT1-203ENST00000354098 DNAAF5Q86Y56 855 aa23.27■■□□□ 1.32
SHMT1-203ENST00000354098 SCML4Q8N228 414 aa23.27■■□□□ 1.32
SHMT1-203ENST00000354098 SYNCQ9H7C4 482 aa23.27■■□□□ 1.32
SHMT1-203ENST00000354098 CCSER2Q9H7U1 834 aa23.27■■□□□ 1.32
SHMT1-203ENST00000354098 ZNHIT6Q9NWK9 470 aaKnown RBP23.27■■□□□ 1.32
SHMT1-203ENST00000354098 GDE1Q9NZC3 331 aa23.27■■□□□ 1.32
SHMT1-203ENST00000354098 ADAMTS1Q9UHI8 967 aa23.27■■□□□ 1.32
SHMT1-203ENST00000354098 NAGPAQ9UK23 515 aa23.27■■□□□ 1.32
SHMT1-203ENST00000354098 TMCO5BA8MYB1 307 aa23.26■■□□□ 1.31
SHMT1-203ENST00000354098 FBXO21O94952 628 aa23.26■■□□□ 1.31
SHMT1-203ENST00000354098 YWHAGP61981 247 aaKnown RBP eCLIP23.26■■□□□ 1.31
SHMT1-203ENST00000354098 MMS22LQ6ZRQ5 1243 aa23.26■■□□□ 1.31
SHMT1-203ENST00000354098 ARL14EPQ8N8R7 260 aaPredicted RBP23.26■■□□□ 1.31
SHMT1-203ENST00000354098 ACSF2Q96CM8 615 aaPredicted RBP23.26■■□□□ 1.31
SHMT1-203ENST00000354098 C18orf8Q96DM3 657 aa23.26■■□□□ 1.31
SHMT1-203ENST00000354098 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP23.26■■□□□ 1.31
SHMT1-203ENST00000354098 RNF38Q9H0F5 515 aa23.26■■□□□ 1.31
SHMT1-203ENST00000354098 NUDT5Q9UKK9 219 aa23.26■■□□□ 1.31
SHMT1-203ENST00000354098 OAS1P00973 400 aaKnown RBP23.25■■□□□ 1.31
SHMT1-203ENST00000354098 MMP8P22894 467 aa23.25■■□□□ 1.31
SHMT1-203ENST00000354098 EIF4A3P38919 411 aaKnown RBP23.25■■□□□ 1.31
SHMT1-203ENST00000354098 NSFP46459 744 aaKnown RBP23.25■■□□□ 1.31
SHMT1-203ENST00000354098 GABRB2P47870 512 aa23.25■■□□□ 1.31
SHMT1-203ENST00000354098 MRE11P49959 708 aa23.25■■□□□ 1.31
SHMT1-203ENST00000354098 TAF5Q15542 800 aa23.25■■□□□ 1.31
SHMT1-203ENST00000354098 FAM78AQ5JUQ0 283 aa23.25■■□□□ 1.31
SHMT1-203ENST00000354098 OR6B2Q6IFH4 312 aa23.25■■□□□ 1.31
SHMT1-203ENST00000354098 FAM183BPQ6ZVS7 135 aa23.25■■□□□ 1.31
SHMT1-203ENST00000354098 ADHFE1Q8IWW8 467 aa23.25■■□□□ 1.31
SHMT1-203ENST00000354098 TDRD5Q8NAT2 981 aaKnown RBP23.25■■□□□ 1.31
SHMT1-203ENST00000354098 ZSCAN18Q8TBC5 510 aaPredicted RBP23.25■■□□□ 1.31
SHMT1-203ENST00000354098 IPO4Q8TEX9 1081 aaKnown RBP23.25■■□□□ 1.31
SHMT1-203ENST00000354098 C11orf70Q9BRQ4 267 aa23.25■■□□□ 1.31
SHMT1-203ENST00000354098 SMG9Q9H0W8 520 aaKnown RBP23.25■■□□□ 1.31
SHMT1-203ENST00000354098 NR2E1Q9Y466 385 aa23.25■■□□□ 1.31
SHMT1-203ENST00000354098 DENND4CQ5VZ89 1909 aa23.25■■□□□ 1.31
SHMT1-203ENST00000354098 TBX18O95935 607 aa23.25■■□□□ 1.31
SHMT1-203ENST00000354098 RARGP13631 454 aa23.25■■□□□ 1.31
SHMT1-203ENST00000354098 DDX6P26196 483 aaKnown RBP eCLIP23.25■■□□□ 1.31
SHMT1-203ENST00000354098 ZP2Q05996 745 aa23.25■■□□□ 1.31
SHMT1-203ENST00000354098 BSPRYQ5W0U4 402 aa23.25■■□□□ 1.31
SHMT1-203ENST00000354098 ACAD10Q6JQN1 1059 aa23.25■■□□□ 1.31
SHMT1-203ENST00000354098 PHLDB2Q86SQ0 1253 aa23.25■■□□□ 1.31
SHMT1-203ENST00000354098 CMTM8Q8IZV2 173 aa23.25■■□□□ 1.31
SHMT1-203ENST00000354098 IRGQQ8WZA9 623 aa23.25■■□□□ 1.31
SHMT1-203ENST00000354098 EDEM1Q92611 657 aa23.25■■□□□ 1.31
SHMT1-203ENST00000354098 MTPAPQ9NVV4 582 aaKnown RBP eCLIP23.25■■□□□ 1.31
SHMT1-203ENST00000354098 IMPACTQ9P2X3 320 aa23.25■■□□□ 1.31
SHMT1-203ENST00000354098 EPS15L1Q9UBC2 864 aa23.25■■□□□ 1.31
SHMT1-203ENST00000354098 ANAPC1Q9H1A4 1944 aa23.24■■□□□ 1.31
SHMT1-203ENST00000354098 DOCK8Q8NF50 2099 aa23.24■■□□□ 1.31
SHMT1-203ENST00000354098 A0A087X0T9 212 aa23.24■■□□□ 1.31
SHMT1-203ENST00000354098 LOC730098B7Z3J9 87 aa23.24■■□□□ 1.31
SHMT1-203ENST00000354098 TLR5O60602 858 aa23.24■■□□□ 1.31
SHMT1-203ENST00000354098 FAM228BP0C875 321 aa23.24■■□□□ 1.31
SHMT1-203ENST00000354098 HDCP19113 662 aa23.24■■□□□ 1.31
SHMT1-203ENST00000354098 PTP4A2Q12974 167 aa23.24■■□□□ 1.31
SHMT1-203ENST00000354098 HECTD3Q5T447 861 aa23.24■■□□□ 1.31
SHMT1-203ENST00000354098 OLFML1Q6UWY5 402 aa23.24■■□□□ 1.31
SHMT1-203ENST00000354098 XYLT1Q86Y38 959 aa23.24■■□□□ 1.31
SHMT1-203ENST00000354098 PHF13Q86YI8 300 aaPredicted RBP23.24■■□□□ 1.31
SHMT1-203ENST00000354098 ARID3BQ8IVW6 561 aaPredicted RBP23.24■■□□□ 1.31
SHMT1-203ENST00000354098 ASB16Q96NS5 453 aa23.24■■□□□ 1.31
SHMT1-203ENST00000354098 PRKAG3Q9UGI9 489 aa23.24■■□□□ 1.31
SHMT1-203ENST00000354098 ZFP37Q9Y6Q3 630 aaPredicted RBP23.24■■□□□ 1.31
SHMT1-203ENST00000354098 COCHO43405 550 aa23.23■■□□□ 1.31
SHMT1-203ENST00000354098 PSEN1P49768 467 aa23.23■■□□□ 1.31
SHMT1-203ENST00000354098 SNX16P57768 344 aa23.23■■□□□ 1.31
SHMT1-203ENST00000354098 ARHGAP18Q8N392 663 aa23.23■■□□□ 1.31
SHMT1-203ENST00000354098 CLIC5Q9NZA1 410 aa23.23■■□□□ 1.31
SHMT1-203ENST00000354098 ADAM22Q9P0K1 906 aa23.23■■□□□ 1.31
SHMT1-203ENST00000354098 LIMD1Q9UGP4 676 aa23.23■■□□□ 1.31
SHMT1-203ENST00000354098 TCF20Q9UGU0 1960 aaKnown RBP23.23■■□□□ 1.31
SHMT1-203ENST00000354098 TRAV19A0A0A6YYK7 116 aa23.22■■□□□ 1.31
SHMT1-203ENST00000354098 PRAMEF12O95522 483 aa23.22■■□□□ 1.31
SHMT1-203ENST00000354098 LTFP02788 710 aa23.22■■□□□ 1.31
SHMT1-203ENST00000354098 FYNP06241 537 aa23.22■■□□□ 1.31
SHMT1-203ENST00000354098 AVPR1AP37288 418 aa23.22■■□□□ 1.31
SHMT1-203ENST00000354098 SLC6A3Q01959 620 aa23.22■■□□□ 1.31
SHMT1-203ENST00000354098 MAPK8IP2Q13387 824 aaPredicted RBP23.22■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms