RNA–Protein interactions for RNA: ENST00000343508.7

CSMD3-203, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 13,018 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-203ENST00000343508 SDR42E2A6NKP2 422 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 H3BNX3 289 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 ZBTB39O15060 712 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 TLR2O60603 784 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 USP1O94782 785 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 RPS6KA3P51812 740 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 INAQ16352 499 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 BMT2Q1RMZ1 405 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 TDRPQ86YL5 185 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 LRRC57Q8N9N7 239 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 NDNQ99608 321 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 EPAS1Q99814 870 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 C8orf4Q9NR00 106 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 SQORQ9Y6N5 450 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 C3orf70A6NLC5 250 aaPredicted RBP4.94□□□□□ -1.62
CSMD3-203ENST00000343508 TM7SF2O76062 418 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 ASTE1Q2TB18 679 aaPredicted RBP4.94□□□□□ -1.62
CSMD3-203ENST00000343508 ZDHHC17Q8IUH5 632 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 SLC9A9Q8IVB4 645 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 ABRAQ8N0Z2 381 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 ERVK-5Q9HDB9 667 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 C1orf232A0A0U1RR37 186 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 MAGEC1O60732 1142 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 BCL10O95999 233 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 ME2P23368 584 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 CYP24A1Q07973 514 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 NAB1Q13506 487 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 ANO4Q32M45 955 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 AADACL2Q6P093 401 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 RBM44Q6ZP01 1051 aaKnown RBP4.94□□□□□ -1.62
CSMD3-203ENST00000343508 PATL1Q86TB9 770 aaKnown RBP4.94□□□□□ -1.62
CSMD3-203ENST00000343508 RNF135Q8IUD6 432 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 C4orf19Q8IY42 314 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 SERBP1Q8NC51 408 aaKnown RBP eCLIP4.94□□□□□ -1.62
CSMD3-203ENST00000343508 CBWD1Q9BRT8 395 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 KBTBD13C9JR72 458 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 PTGER2P43116 358 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 DCCP43146 1447 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 ILF2Q12905 390 aaKnown RBP4.94□□□□□ -1.62
CSMD3-203ENST00000343508 STRIP1Q5VSL9 837 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 ZNF554Q86TJ5 538 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 EPS8L1Q8TE68 723 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 PDCD6IPQ8WUM4 868 aaKnown RBP4.94□□□□□ -1.62
CSMD3-203ENST00000343508 SNRNP27Q8WVK2 155 aaKnown RBP4.94□□□□□ -1.62
CSMD3-203ENST00000343508 MASTLQ96GX5 879 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 DDX50Q9BQ39 737 aaKnown RBP4.94□□□□□ -1.62
CSMD3-203ENST00000343508 OSBPL11Q9BXB4 747 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 RAVER2Q9HCJ3 691 aaKnown RBP4.94□□□□□ -1.62
CSMD3-203ENST00000343508 FBXO40Q9UH90 709 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 ZNF142P52746 1687 aaPredicted RBP4.94□□□□□ -1.62
CSMD3-203ENST00000343508 CLK1P49759 484 aaKnown RBP4.94□□□□□ -1.62
CSMD3-203ENST00000343508 KCNK10P57789 538 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 SPANXN3Q5MJ09 141 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 CIAPIN1Q6FI81 312 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 FAM196AQ6ZSG2 479 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 METTL23Q86XA0 190 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 MYLK4Q86YV6 388 aaPredicted RBP4.94□□□□□ -1.62
CSMD3-203ENST00000343508 CCDC103Q8IW40 242 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 MARCH10Q8NA82 808 aaPredicted RBP4.94□□□□□ -1.62
CSMD3-203ENST00000343508 ACMSDQ8TDX5 336 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 VPS50Q96JG6 964 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 LRRC42Q9Y546 428 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 PGM3O95394 542 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 NDUFB10O96000 172 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 SULT1E1P49888 294 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 BTKQ06187 659 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 HABP4Q5JVS0 413 aaKnown RBP4.94□□□□□ -1.62
CSMD3-203ENST00000343508 CCDC80Q76M96 950 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 BRD8Q9H0E9 1235 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 PLGRKTQ9HBL7 147 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 EEF2KO00418 725 aaKnown RBP4.94□□□□□ -1.62
CSMD3-203ENST00000343508 TPI1P60174 286 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 CCNA1P78396 465 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 TRAF7Q6Q0C0 670 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 ECHDC2Q86YB7 292 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 ZNF317Q96PQ6 595 aaPredicted RBP4.94□□□□□ -1.62
CSMD3-203ENST00000343508 LRRC40Q9H9A6 602 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 CNGB3Q9NQW8 809 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 SH3GLB1Q9Y371 365 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 LOXHD1Q8IVV2 1947 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 A0A087WXM4 84 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 DDX3YO15523 660 aaKnown RBP4.94□□□□□ -1.62
CSMD3-203ENST00000343508 CPA3P15088 417 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 SP100P23497 879 aaPredicted RBP4.94□□□□□ -1.62
CSMD3-203ENST00000343508 ELK3P41970 407 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 MTM1Q13496 603 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 SV2AQ7L0J3 742 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 HAS1Q92839 578 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 TRIM63Q969Q1 353 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 NEUROG2Q9H2A3 272 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 LRRC4CQ9HCJ2 640 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 SLCO1B3Q9NPD5 702 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 SPAG4Q9NPE6 437 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 SRP68Q9UHB9 627 aaKnown RBP4.94□□□□□ -1.62
CSMD3-203ENST00000343508 DAGLAQ9Y4D2 1042 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 UBR2Q8IWV8 1755 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 TYW5A2RUC4 315 aaKnown RBP4.94□□□□□ -1.62
CSMD3-203ENST00000343508 NCAM2O15394 837 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 LIASO43766 372 aa4.94□□□□□ -1.62
CSMD3-203ENST00000343508 EIF2B2P49770 351 aaKnown RBP4.94□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms