RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 ROPN1BQ9BZX4 212 aaPredicted RBP13.22□□□□□ -0.29
USP47-202ENST00000339865 ROPN1Q9HAT0 212 aaPredicted RBP13.22□□□□□ -0.29
USP47-202ENST00000339865 TMEM165Q9HC07 324 aa13.22□□□□□ -0.29
USP47-202ENST00000339865 FAM49BQ9NUQ9 324 aa13.22□□□□□ -0.29
USP47-202ENST00000339865 TUBA8Q9NY65 449 aaPredicted RBP13.22□□□□□ -0.29
USP47-202ENST00000339865 S100GP29377 79 aa13.22□□□□□ -0.29
USP47-202ENST00000339865 R3HCC1LQ7Z5L2 792 aaKnown RBP13.22□□□□□ -0.29
USP47-202ENST00000339865 PSMA8Q8TAA3 256 aa13.22□□□□□ -0.29
USP47-202ENST00000339865 USP13Q92995 863 aaPredicted RBP13.22□□□□□ -0.29
USP47-202ENST00000339865 FAM210AQ96ND0 272 aa13.22□□□□□ -0.29
USP47-202ENST00000339865 ZNF341Q9BYN7 854 aa13.22□□□□□ -0.29
USP47-202ENST00000339865 GJB4Q9NTQ9 266 aa13.22□□□□□ -0.29
USP47-202ENST00000339865 TOR4AQ9NXH8 423 aa13.22□□□□□ -0.29
USP47-202ENST00000339865 PRPF3O43395 683 aaKnown RBP13.22□□□□□ -0.29
USP47-202ENST00000339865 CDH3P22223 829 aa13.22□□□□□ -0.29
USP47-202ENST00000339865 RPTNQ6XPR3 784 aa13.22□□□□□ -0.29
USP47-202ENST00000339865 TRPV3Q8NET8 790 aa13.22□□□□□ -0.29
USP47-202ENST00000339865 BPIFA3Q9BQP9 254 aa13.22□□□□□ -0.29
USP47-202ENST00000339865 PAK5Q9P286 719 aa13.22□□□□□ -0.29
USP47-202ENST00000339865 ITSN2Q9NZM3 1697 aa13.22□□□□□ -0.29
USP47-202ENST00000339865 CHURC1-FNTBB4DL54 471 aa13.22□□□□□ -0.29
USP47-202ENST00000339865 CDC25CP30307 473 aa13.22□□□□□ -0.29
USP47-202ENST00000339865 ZNF157P51786 506 aaPredicted RBP13.22□□□□□ -0.29
USP47-202ENST00000339865 ACLYP53396 1101 aa13.22□□□□□ -0.29
USP47-202ENST00000339865 DCAF6Q58WW2 860 aa13.22□□□□□ -0.29
USP47-202ENST00000339865 ARHGEF19Q8IW93 802 aa13.22□□□□□ -0.29
USP47-202ENST00000339865 RGL4Q8IZJ4 473 aa13.22□□□□□ -0.29
USP47-202ENST00000339865 SIPA1Q96FS4 1042 aa13.22□□□□□ -0.29
USP47-202ENST00000339865 PLEKHG4BQ96PX9 1271 aa13.22□□□□□ -0.29
USP47-202ENST00000339865 RRN3Q9NYV6 651 aa13.22□□□□□ -0.29
USP47-202ENST00000339865 TBC1D24Q9ULP9 559 aa13.22□□□□□ -0.29
USP47-202ENST00000339865 DYNC1LI2O43237 492 aaPredicted RBP13.22□□□□□ -0.29
USP47-202ENST00000339865 PMPCBO75439 489 aa13.22□□□□□ -0.29
USP47-202ENST00000339865 ATP6V1G2O95670 118 aa13.22□□□□□ -0.29
USP47-202ENST00000339865 PRLP01236 227 aa13.22□□□□□ -0.29
USP47-202ENST00000339865 PRELPP51888 382 aa13.22□□□□□ -0.29
USP47-202ENST00000339865 GRIK3Q13003 919 aa13.22□□□□□ -0.29
USP47-202ENST00000339865 DAW1Q8N136 415 aa13.22□□□□□ -0.29
USP47-202ENST00000339865 TRMT13Q9NUP7 481 aaKnown RBP13.22□□□□□ -0.29
USP47-202ENST00000339865 SH2B2O14492 632 aaPredicted RBP13.22□□□□□ -0.29
USP47-202ENST00000339865 QPRTQ15274 297 aa13.22□□□□□ -0.29
USP47-202ENST00000339865 TDRD5Q8NAT2 981 aaKnown RBP13.22□□□□□ -0.29
USP47-202ENST00000339865 BHMTQ93088 406 aa13.22□□□□□ -0.29
USP47-202ENST00000339865 OTUD5Q96G74 571 aa13.22□□□□□ -0.29
USP47-202ENST00000339865 PPP1R2P1Q96PQ5 205 aa13.22□□□□□ -0.29
USP47-202ENST00000339865 AGO2Q9UKV8 859 aaKnown RBP13.22□□□□□ -0.29
USP47-202ENST00000339865 GPC6Q9Y625 555 aaPredicted RBP13.22□□□□□ -0.29
USP47-202ENST00000339865 NPATQ14207 1427 aa13.22□□□□□ -0.29
USP47-202ENST00000339865 TMCC2O75069 709 aa13.21□□□□□ -0.29
USP47-202ENST00000339865 FKBP6O75344 327 aa13.21□□□□□ -0.29
USP47-202ENST00000339865 SNX4O95219 450 aa13.21□□□□□ -0.29
USP47-202ENST00000339865 UBE3CQ15386 1083 aa13.21□□□□□ -0.29
USP47-202ENST00000339865 SWI5Q1ZZU3 235 aa13.21□□□□□ -0.29
USP47-202ENST00000339865 LRRC34Q8IZ02 419 aa13.21□□□□□ -0.29
USP47-202ENST00000339865 AHCYL2Q96HN2 611 aaKnown RBP13.21□□□□□ -0.29
USP47-202ENST00000339865 ART5Q96L15 291 aa13.21□□□□□ -0.29
USP47-202ENST00000339865 OSBPL5Q9H0X9 879 aaPredicted RBP13.21□□□□□ -0.29
USP47-202ENST00000339865 CAB39LQ9H9S4 337 aa13.21□□□□□ -0.29
USP47-202ENST00000339865 YEATS2Q9ULM3 1422 aa13.21□□□□□ -0.29
USP47-202ENST00000339865 PCDHA6Q9UN73 950 aa13.21□□□□□ -0.29
USP47-202ENST00000339865 TELO2Q9Y4R8 837 aa13.21□□□□□ -0.29
USP47-202ENST00000339865 PCDHA8Q9Y5H6 950 aa13.21□□□□□ -0.29
USP47-202ENST00000339865 SPAG6O75602 509 aa13.21□□□□□ -0.29
USP47-202ENST00000339865 PDGFRBP09619 1106 aa13.21□□□□□ -0.29
USP47-202ENST00000339865 TTLL9Q3SXZ7 439 aa13.21□□□□□ -0.29
USP47-202ENST00000339865 IP6K1Q92551 441 aa13.21□□□□□ -0.29
USP47-202ENST00000339865 KRT35Q92764 455 aa13.21□□□□□ -0.29
USP47-202ENST00000339865 OXCT2Q9BYC2 517 aaPredicted RBP13.21□□□□□ -0.29
USP47-202ENST00000339865 PNPLA8Q9NP80 782 aa13.21□□□□□ -0.29
USP47-202ENST00000339865 CRLS1Q9UJA2 301 aa13.21□□□□□ -0.29
USP47-202ENST00000339865 ZHX2Q9Y6X8 837 aa13.21□□□□□ -0.29
USP47-202ENST00000339865 ABCB11O95342 1321 aa13.21□□□□□ -0.29
USP47-202ENST00000339865 UMPSP11172 480 aa13.21□□□□□ -0.29
USP47-202ENST00000339865 GDPD5Q8WTR4 605 aa13.21□□□□□ -0.29
USP47-202ENST00000339865 RIBC2Q9H4K1 309 aa13.21□□□□□ -0.29
USP47-202ENST00000339865 SENP2Q9HC62 589 aa13.21□□□□□ -0.29
USP47-202ENST00000339865 ZNF224Q9NZL3 707 aa13.21□□□□□ -0.29
USP47-202ENST00000339865 UHRF1BP1Q6BDS2 1440 aa13.21□□□□□ -0.29
USP47-202ENST00000339865 ATP10DQ9P241 1426 aa13.21□□□□□ -0.29
USP47-202ENST00000339865 STX16-NPEPL1H3BU86 382 aa13.21□□□□□ -0.29
USP47-202ENST00000339865 EEF2KO00418 725 aaKnown RBP13.21□□□□□ -0.29
USP47-202ENST00000339865 STX16O14662 325 aa13.21□□□□□ -0.29
USP47-202ENST00000339865 CLOCKO15516 846 aa13.21□□□□□ -0.29
USP47-202ENST00000339865 ERN1O75460 977 aaKnown RBP13.21□□□□□ -0.29
USP47-202ENST00000339865 IFNA14P01570 189 aa13.21□□□□□ -0.29
USP47-202ENST00000339865 CCNA2P20248 432 aa13.21□□□□□ -0.29
USP47-202ENST00000339865 GTF2H1P32780 548 aa13.21□□□□□ -0.29
USP47-202ENST00000339865 ZMYM1Q5SVZ6 1142 aa13.21□□□□□ -0.29
USP47-202ENST00000339865 STK32CQ86UX6 486 aa13.21□□□□□ -0.29
USP47-202ENST00000339865 FAM71DQ8N9W8 422 aa13.21□□□□□ -0.29
USP47-202ENST00000339865 C3orf20Q8ND61 904 aa13.21□□□□□ -0.29
USP47-202ENST00000339865 HPS1Q92902 700 aa13.21□□□□□ -0.29
USP47-202ENST00000339865 MED8Q96G25 268 aa13.21□□□□□ -0.29
USP47-202ENST00000339865 ARMC7Q9H6L4 198 aa13.21□□□□□ -0.29
USP47-202ENST00000339865 PRKAB1Q9Y478 270 aa13.21□□□□□ -0.29
USP47-202ENST00000339865 PDGFRAP16234 1089 aa13.21□□□□□ -0.3
USP47-202ENST00000339865 EFHD2Q96C19 240 aaPredicted RBP13.21□□□□□ -0.3
USP47-202ENST00000339865 HAVCR1Q96D42 359 aa13.21□□□□□ -0.3
USP47-202ENST00000339865 ZC3H10Q96K80 434 aaKnown RBP13.21□□□□□ -0.3
USP47-202ENST00000339865 TFECO14948 347 aaPredicted RBP13.21□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms