RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 NCANO14594 1321 aa23.28■■□□□ 1.32
SDC3-202ENST00000339394 A0A1W2PQH9 124 aa23.27■■□□□ 1.32
SDC3-202ENST00000339394 ZNF840PA6NDX5 716 aa23.27■■□□□ 1.32
SDC3-202ENST00000339394 ZNF197O14709 1029 aa23.27■■□□□ 1.32
SDC3-202ENST00000339394 ZNF263O14978 683 aa23.27■■□□□ 1.32
SDC3-202ENST00000339394 MOSPD3O75425 235 aa23.27■■□□□ 1.32
SDC3-202ENST00000339394 GJA1P17302 382 aa23.27■■□□□ 1.32
SDC3-202ENST00000339394 PPP3CCP48454 512 aa23.27■■□□□ 1.32
SDC3-202ENST00000339394 OLFML1Q6UWY5 402 aa23.27■■□□□ 1.32
SDC3-202ENST00000339394 RAD9BQ6WBX8 426 aa23.27■■□□□ 1.32
SDC3-202ENST00000339394 SCD5Q86SK9 330 aa23.27■■□□□ 1.32
SDC3-202ENST00000339394 PHLDB2Q86SQ0 1253 aa23.27■■□□□ 1.32
SDC3-202ENST00000339394 SHKBP1Q8TBC3 707 aa23.27■■□□□ 1.32
SDC3-202ENST00000339394 IRGQQ8WZA9 623 aa23.27■■□□□ 1.32
SDC3-202ENST00000339394 SUSD6Q92537 303 aa23.27■■□□□ 1.32
SDC3-202ENST00000339394 PPP1R9BQ96SB3 815 aa23.27■■□□□ 1.32
SDC3-202ENST00000339394 TLR8Q9NR97 1041 aaKnown RBP23.27■■□□□ 1.32
SDC3-202ENST00000339394 OSER1Q9NX31 292 aa23.27■■□□□ 1.32
SDC3-202ENST00000339394 STRIP2Q9ULQ0 834 aa23.27■■□□□ 1.32
SDC3-202ENST00000339394 MRPS23Q9Y3D9 190 aaKnown RBP23.27■■□□□ 1.32
SDC3-202ENST00000339394 USP15Q9Y4E8 981 aaPredicted RBP23.27■■□□□ 1.32
SDC3-202ENST00000339394 EPN1Q9Y6I3 576 aaPredicted RBP23.27■■□□□ 1.32
SDC3-202ENST00000339394 SART1O43290 800 aaKnown RBP23.27■■□□□ 1.32
SDC3-202ENST00000339394 ABL1P00519 1130 aa23.27■■□□□ 1.32
SDC3-202ENST00000339394 PTMAP06454 111 aaKnown RBP23.27■■□□□ 1.32
SDC3-202ENST00000339394 CYLC1P35663 651 aaPredicted RBP23.27■■□□□ 1.32
SDC3-202ENST00000339394 MTHFRP42898 656 aa23.27■■□□□ 1.32
SDC3-202ENST00000339394 SLC6A3Q01959 620 aa23.27■■□□□ 1.32
SDC3-202ENST00000339394 ZNF268Q14587 947 aaPredicted RBP23.27■■□□□ 1.32
SDC3-202ENST00000339394 TAF5Q15542 800 aa23.27■■□□□ 1.32
SDC3-202ENST00000339394 SNX30Q5VWJ9 437 aa23.27■■□□□ 1.32
SDC3-202ENST00000339394 CCDC112Q8NEF3 446 aa23.27■■□□□ 1.32
SDC3-202ENST00000339394 ITFG1Q8TB96 612 aa23.27■■□□□ 1.32
SDC3-202ENST00000339394 PRDM6Q9NQX0 595 aa23.27■■□□□ 1.32
SDC3-202ENST00000339394 BRWD1Q9NSI6 2320 aa23.26■■□□□ 1.31
SDC3-202ENST00000339394 CLUHO75153 1309 aa23.26■■□□□ 1.31
SDC3-202ENST00000339394 GRXCR2A6NFK2 248 aa23.26■■□□□ 1.31
SDC3-202ENST00000339394 NDUFA10O95299 355 aa23.26■■□□□ 1.31
SDC3-202ENST00000339394 LCA5LO95447 670 aa23.26■■□□□ 1.31
SDC3-202ENST00000339394 RRM1P23921 792 aa23.26■■□□□ 1.31
SDC3-202ENST00000339394 YWHAGP61981 247 aaKnown RBP eCLIP23.26■■□□□ 1.31
SDC3-202ENST00000339394 SMAD4Q13485 552 aaKnown RBP23.26■■□□□ 1.31
SDC3-202ENST00000339394 CBX2Q14781 532 aaPredicted RBP23.26■■□□□ 1.31
SDC3-202ENST00000339394 BSPRYQ5W0U4 402 aa23.26■■□□□ 1.31
SDC3-202ENST00000339394 TOGARAM2Q6ZUX3 1019 aa23.26■■□□□ 1.31
SDC3-202ENST00000339394 HFE2Q6ZVN8 426 aa23.26■■□□□ 1.31
SDC3-202ENST00000339394 NECTIN4Q96NY8 510 aa23.26■■□□□ 1.31
SDC3-202ENST00000339394 GCNAQ96QF7 691 aa23.26■■□□□ 1.31
SDC3-202ENST00000339394 MYH10P35580 1976 aa23.25■■□□□ 1.31
SDC3-202ENST00000339394 EIF3CLB5ME19 914 aaKnown RBP23.25■■□□□ 1.31
SDC3-202ENST00000339394 ABCB4P21439 1286 aa23.25■■□□□ 1.31
SDC3-202ENST00000339394 FSHRP23945 695 aa23.25■■□□□ 1.31
SDC3-202ENST00000339394 PSEN1P49768 467 aa23.25■■□□□ 1.31
SDC3-202ENST00000339394 GSCP56915 257 aaPredicted RBP23.25■■□□□ 1.31
SDC3-202ENST00000339394 CYP4F8P98187 520 aa23.25■■□□□ 1.31
SDC3-202ENST00000339394 TEAD2Q15562 447 aa23.25■■□□□ 1.31
SDC3-202ENST00000339394 LEXMQ3ZCV2 418 aa23.25■■□□□ 1.31
SDC3-202ENST00000339394 EFHC1Q5JVL4 640 aa23.25■■□□□ 1.31
SDC3-202ENST00000339394 ARHGAP18Q8N392 663 aa23.25■■□□□ 1.31
SDC3-202ENST00000339394 GADD45GIP1Q8TAE8 222 aaPredicted RBP23.25■■□□□ 1.31
SDC3-202ENST00000339394 MRPS31Q92665 395 aaKnown RBP23.25■■□□□ 1.31
SDC3-202ENST00000339394 KHSRPQ92945 711 aaKnown RBP eCLIP23.25■■□□□ 1.31
SDC3-202ENST00000339394 FAM149B1Q96BN6 582 aa23.25■■□□□ 1.31
SDC3-202ENST00000339394 MCRS1Q96EZ8 462 aa23.25■■□□□ 1.31
SDC3-202ENST00000339394 EIF3CQ99613 913 aaKnown RBP23.25■■□□□ 1.31
SDC3-202ENST00000339394 POMKQ9H5K3 350 aa23.25■■□□□ 1.31
SDC3-202ENST00000339394 WDR35Q9P2L0 1181 aa23.25■■□□□ 1.31
SDC3-202ENST00000339394 GOLGA8SH3BPF8 625 aa23.24■■□□□ 1.31
SDC3-202ENST00000339394 MBTPS2O43462 519 aa23.24■■□□□ 1.31
SDC3-202ENST00000339394 YWHAZP63104 245 aaKnown RBP23.24■■□□□ 1.31
SDC3-202ENST00000339394 TFF2Q03403 129 aa23.24■■□□□ 1.31
SDC3-202ENST00000339394 STXBP5Q5T5C0 1151 aa23.24■■□□□ 1.31
SDC3-202ENST00000339394 FAM102AQ5T9C2 384 aaPredicted RBP23.24■■□□□ 1.31
SDC3-202ENST00000339394 TXNDC8Q6A555 127 aa23.24■■□□□ 1.31
SDC3-202ENST00000339394 SLC26A9Q7LBE3 791 aa23.24■■□□□ 1.31
SDC3-202ENST00000339394 ING5Q8WYH8 240 aa23.24■■□□□ 1.31
SDC3-202ENST00000339394 PACSIN1Q9BY11 444 aa23.24■■□□□ 1.31
SDC3-202ENST00000339394 THAP2Q9H0W7 228 aa23.24■■□□□ 1.31
SDC3-202ENST00000339394 CLIC5Q9NZA1 410 aa23.24■■□□□ 1.31
SDC3-202ENST00000339394 ANKRD62A6NC57 917 aa23.23■■□□□ 1.31
SDC3-202ENST00000339394 C2orf78A6NCI8 922 aa23.23■■□□□ 1.31
SDC3-202ENST00000339394 GRAP2O75791 330 aa23.23■■□□□ 1.31
SDC3-202ENST00000339394 LTFP02788 710 aa23.23■■□□□ 1.31
SDC3-202ENST00000339394 GLI1P08151 1106 aa23.23■■□□□ 1.31
SDC3-202ENST00000339394 CEBPBP17676 345 aa23.23■■□□□ 1.31
SDC3-202ENST00000339394 GALCP54803 685 aa23.23■■□□□ 1.31
SDC3-202ENST00000339394 CCZ1BP86790 482 aa23.23■■□□□ 1.31
SDC3-202ENST00000339394 CCZ1P86791 482 aaPredicted RBP23.23■■□□□ 1.31
SDC3-202ENST00000339394 SPA17Q15506 151 aa23.23■■□□□ 1.31
SDC3-202ENST00000339394 C3orf20Q8ND61 904 aa23.23■■□□□ 1.31
SDC3-202ENST00000339394 GOLGA1Q92805 767 aa23.23■■□□□ 1.31
SDC3-202ENST00000339394 TRIM11Q96F44 468 aa23.23■■□□□ 1.31
SDC3-202ENST00000339394 ABCC13Q9NSE7 274 aa23.23■■□□□ 1.31
SDC3-202ENST00000339394 MTPAPQ9NVV4 582 aaKnown RBP eCLIP23.23■■□□□ 1.31
SDC3-202ENST00000339394 PATJQ8NI35 1801 aa23.23■■□□□ 1.31
SDC3-202ENST00000339394 ARHGAP6O43182 974 aa23.23■■□□□ 1.31
SDC3-202ENST00000339394 ATMINO43313 823 aaPredicted RBP23.23■■□□□ 1.31
SDC3-202ENST00000339394 FYNP06241 537 aa23.23■■□□□ 1.31
SDC3-202ENST00000339394 MYBL1P10243 752 aa23.23■■□□□ 1.31
SDC3-202ENST00000339394 RARGP13631 454 aa23.23■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms