RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 CDK5RAP1Q96SZ6 601 aaKnown RBP4.3□□□□□ -1.72
NEDD4-201ENST00000338963 TRAF4Q9BUZ4 470 aaPredicted RBP4.3□□□□□ -1.72
NEDD4-201ENST00000338963 CSRNP2Q9H175 543 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 TRIM45Q9H8W5 580 aaPredicted RBP4.3□□□□□ -1.72
NEDD4-201ENST00000338963 KCNE2Q9Y6J6 123 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 A0A1W2PRQ8 180 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 LGR5O75473 907 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 CLPXO76031 633 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 PTTG1O95997 202 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 H2AFZP0C0S5 128 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 RPS2P15880 293 aaKnown RBP4.29□□□□□ -1.72
NEDD4-201ENST00000338963 TAC1P20366 129 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 CIITAP33076 1130 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 YAP1P46937 504 aaKnown RBP4.29□□□□□ -1.72
NEDD4-201ENST00000338963 TRAPPC10P48553 1259 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 RAB25P57735 213 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 PTENP60484 403 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 SP140Q13342 867 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 ASIC2Q16515 512 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 ESCO2Q56NI9 601 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 FAM47CQ5HY64 1035 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 DUPD1Q68J44 220 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 BEND4Q6ZU67 534 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 H2AFVQ71UI9 128 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 EEPD1Q7L9B9 569 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 C14orf80Q86SX3 495 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 MTDHQ86UE4 582 aaKnown RBP4.29□□□□□ -1.72
NEDD4-201ENST00000338963 GALNT4Q8N4A0 578 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 CDC26Q8NHZ8 85 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 PDCD6IPQ8WUM4 868 aaKnown RBP4.29□□□□□ -1.72
NEDD4-201ENST00000338963 TRIB2Q92519 343 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 DCUN1D1Q96GG9 259 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 ZNF560Q96MR9 790 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 GOLPH3Q9H4A6 298 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 WDR70Q9NW82 654 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 PKD2L1Q9P0L9 805 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 POLHQ9Y253 713 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 NEU2Q9Y3R4 380 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 ADGBQ8N7X0 1667 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 FAM196BA6NMK8 535 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 UGT1A9O60656 530 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 PSIP1O75475 530 aaKnown RBP4.29□□□□□ -1.72
NEDD4-201ENST00000338963 PDE9AO76083 593 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 CBX6O95503 412 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 TFRCP02786 760 aaKnown RBP4.29□□□□□ -1.72
NEDD4-201ENST00000338963 YES1P07947 543 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 C7P10643 843 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 ATP6V1B1P15313 513 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 PRKCAP17252 672 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 NPR3P17342 541 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 GM2AP17900 193 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 UGT1A6P19224 532 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 UGT1A1P22309 533 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 UGT1A4P22310 534 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 ECHS1P30084 290 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 UGT1A3P35503 534 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 UGT1A5P35504 534 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 MAN2A1Q16706 1144 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 VWA5B1Q5TIE3 1220 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 VSTM1Q6UX27 236 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 C16orf89Q6UX73 402 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 CDH24Q86UP0 819 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 FAM83AQ86UY5 434 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 PLCZ1Q86YW0 608 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 TBC1D21Q8IYX1 336 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 C8orf58Q8NAV2 365 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 ZNF507Q8TCN5 953 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 TBRG4Q969Z0 631 aaKnown RBP eCLIP4.29□□□□□ -1.72
NEDD4-201ENST00000338963 HOXD1Q9GZZ0 328 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 EFCAB1Q9HAE3 211 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 UGT1A7Q9HAW7 530 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 UGT1A10Q9HAW8 530 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 UGT1A8Q9HAW9 530 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 POLMQ9NP87 494 aaPredicted RBP4.29□□□□□ -1.72
NEDD4-201ENST00000338963 STAU2Q9NUL3 570 aaKnown RBP eCLIP4.29□□□□□ -1.72
NEDD4-201ENST00000338963 NCKIPSDQ9NZQ3 722 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 VPS54Q9P1Q0 977 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 SLC24A2Q9UI40 661 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 VPS51Q9UID3 782 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 ARHGEF37A1IGU5 675 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 CHMP2AO43633 222 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 NCK2O43639 380 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 CCNT2O60583 730 aaKnown RBP4.29□□□□□ -1.72
NEDD4-201ENST00000338963 CCNKO75909 580 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 OR6B1O95007 311 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 H6PDO95479 791 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 CYP3A5P20815 502 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 IL12RB1P42701 662 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 CYP27A1Q02318 531 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 TNFAIP2Q03169 654 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 CAMK1Q14012 370 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 STXBP4Q6ZWJ1 553 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 FAM124AQ86V42 546 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 VPS37DQ86XT2 251 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 TDRPQ86YL5 185 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 HPS6Q86YV9 775 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 NACC1Q96RE7 527 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 CHP1Q99653 195 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 TTPALQ9BTX7 342 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 MKNK1Q9BUB5 465 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms