RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 RNF19BQ6ZMZ0 732 aa15.61■□□□□ 0.09
CCDC88C-202ENST00000334448 CYP4V2Q6ZWL3 525 aaPredicted RBP15.61■□□□□ 0.09
CCDC88C-202ENST00000334448 PSTKQ8IV42 348 aaKnown RBP15.61■□□□□ 0.09
CCDC88C-202ENST00000334448 ATAD1Q8NBU5 361 aa15.61■□□□□ 0.09
CCDC88C-202ENST00000334448 CMASQ8NFW8 434 aaPredicted RBP15.61■□□□□ 0.09
CCDC88C-202ENST00000334448 MS4A14Q96JA4 679 aa15.61■□□□□ 0.09
CCDC88C-202ENST00000334448 ZBED2Q9BTP6 218 aa15.61■□□□□ 0.09
CCDC88C-202ENST00000334448 ZBP1Q9H171 429 aa15.61■□□□□ 0.09
CCDC88C-202ENST00000334448 STAP1Q9ULZ2 295 aa15.61■□□□□ 0.09
CCDC88C-202ENST00000334448 SCML2Q9UQR0 700 aa15.61■□□□□ 0.09
CCDC88C-202ENST00000334448 USTQ9Y2C2 406 aa15.61■□□□□ 0.09
CCDC88C-202ENST00000334448 EFR3BQ9Y2G0 817 aa15.61■□□□□ 0.09
CCDC88C-202ENST00000334448 ZNF487B1APH4 448 aa15.6■□□□□ 0.09
CCDC88C-202ENST00000334448 C5orf67F2Z3F1 127 aa15.6■□□□□ 0.09
CCDC88C-202ENST00000334448 CCDC188H7C350 402 aa15.6■□□□□ 0.09
CCDC88C-202ENST00000334448 FSCN2O14926 492 aa15.6■□□□□ 0.09
CCDC88C-202ENST00000334448 MDM4O15151 490 aa15.6■□□□□ 0.09
CCDC88C-202ENST00000334448 ADAM12O43184 909 aa15.6■□□□□ 0.09
CCDC88C-202ENST00000334448 GRAP2O75791 330 aa15.6■□□□□ 0.09
CCDC88C-202ENST00000334448 FGF18O76093 207 aa15.6■□□□□ 0.09
CCDC88C-202ENST00000334448 ZRANB2O95218 330 aaKnown RBP eCLIP15.6■□□□□ 0.09
CCDC88C-202ENST00000334448 FGGP02679 453 aa15.6■□□□□ 0.09
CCDC88C-202ENST00000334448 LTFP02788 710 aa15.6■□□□□ 0.09
CCDC88C-202ENST00000334448 USP17L7P0C7H9 530 aa15.6■□□□□ 0.09
CCDC88C-202ENST00000334448 TCF4P15884 667 aa15.6■□□□□ 0.09
CCDC88C-202ENST00000334448 IL1R2P27930 398 aa15.6■□□□□ 0.09
CCDC88C-202ENST00000334448 HDAC4P56524 1084 aa15.6■□□□□ 0.09
CCDC88C-202ENST00000334448 RNASE9P60153 205 aaKnown RBP15.6■□□□□ 0.09
CCDC88C-202ENST00000334448 BOLA3Q53S33 107 aa15.6■□□□□ 0.09
CCDC88C-202ENST00000334448 SLC13A5Q86YT5 568 aaPredicted RBP15.6■□□□□ 0.09
CCDC88C-202ENST00000334448 RCOR2Q8IZ40 523 aa15.6■□□□□ 0.09
CCDC88C-202ENST00000334448 DEFB106AQ8N104 65 aa15.6■□□□□ 0.09
CCDC88C-202ENST00000334448 NUP93Q8N1F7 819 aa15.6■□□□□ 0.09
CCDC88C-202ENST00000334448 ZNF461Q8TAF7 563 aa15.6■□□□□ 0.09
CCDC88C-202ENST00000334448 FAM71BQ8TC56 605 aa15.6■□□□□ 0.09
CCDC88C-202ENST00000334448 FAM172AQ8WUF8 416 aa15.6■□□□□ 0.09
CCDC88C-202ENST00000334448 CFAP57Q96MR6 1250 aa15.6■□□□□ 0.09
CCDC88C-202ENST00000334448 TTLL2Q9BWV7 592 aa15.6■□□□□ 0.09
CCDC88C-202ENST00000334448 FBXO44Q9H4M3 255 aa15.6■□□□□ 0.09
CCDC88C-202ENST00000334448 PCDH10Q9P2E7 1040 aa15.6■□□□□ 0.09
CCDC88C-202ENST00000334448 USP18Q9UMW8 372 aa15.6■□□□□ 0.09
CCDC88C-202ENST00000334448 NR2E3Q9Y5X4 410 aa15.6■□□□□ 0.09
CCDC88C-202ENST00000334448 IRAK3Q9Y616 596 aa15.6■□□□□ 0.09
CCDC88C-202ENST00000334448 TLL1O43897 1013 aa15.59■□□□□ 0.09
CCDC88C-202ENST00000334448 RTN3O95197 1032 aaPredicted RBP15.59■□□□□ 0.09
CCDC88C-202ENST00000334448 TRUB2O95900 331 aaKnown RBP15.59■□□□□ 0.09
CCDC88C-202ENST00000334448 C1RP00736 705 aa15.59■□□□□ 0.09
CCDC88C-202ENST00000334448 ATF2P15336 505 aa15.59■□□□□ 0.09
CCDC88C-202ENST00000334448 OR1D2P34982 312 aa15.59■□□□□ 0.09
CCDC88C-202ENST00000334448 BMPR1AP36894 532 aa15.59■□□□□ 0.09
CCDC88C-202ENST00000334448 TUFMP49411 452 aaKnown RBP15.59■□□□□ 0.09
CCDC88C-202ENST00000334448 UBE3AQ05086 875 aa15.59■□□□□ 0.09
CCDC88C-202ENST00000334448 KLF1Q13351 362 aaPredicted RBP15.59■□□□□ 0.09
CCDC88C-202ENST00000334448 ZNF211Q13398 564 aaPredicted RBP15.59■□□□□ 0.09
CCDC88C-202ENST00000334448 C15orf59Q2T9L4 293 aaPredicted RBP15.59■□□□□ 0.09
CCDC88C-202ENST00000334448 DAB2IPQ5VWQ8 1189 aa15.59■□□□□ 0.09
CCDC88C-202ENST00000334448 VPS52Q8N1B4 723 aa15.59■□□□□ 0.09
CCDC88C-202ENST00000334448 ARHGAP18Q8N392 663 aa15.59■□□□□ 0.09
CCDC88C-202ENST00000334448 NOA1Q8NC60 698 aaKnown RBP15.59■□□□□ 0.09
CCDC88C-202ENST00000334448 MAIP1Q8WWC4 291 aa15.59■□□□□ 0.09
CCDC88C-202ENST00000334448 FAM149B1Q96BN6 582 aa15.59■□□□□ 0.09
CCDC88C-202ENST00000334448 ADAM33Q9BZ11 813 aa15.59■□□□□ 0.09
CCDC88C-202ENST00000334448 CRISPLD1Q9H336 500 aa15.59■□□□□ 0.09
CCDC88C-202ENST00000334448 MRPL17Q9NRX2 175 aaKnown RBP15.59■□□□□ 0.09
CCDC88C-202ENST00000334448 SMARCAL1Q9NZC9 954 aa15.59■□□□□ 0.09
CCDC88C-202ENST00000334448 EHD2Q9NZN4 543 aa15.59■□□□□ 0.09
CCDC88C-202ENST00000334448 KIAA1671Q9BY89 1806 aa15.59■□□□□ 0.09
CCDC88C-202ENST00000334448 UQCRHLA0A096LP55 91 aa15.58■□□□□ 0.08
CCDC88C-202ENST00000334448 C3orf70A6NLC5 250 aaPredicted RBP15.58■□□□□ 0.08
CCDC88C-202ENST00000334448 PRPSAP2O60256 369 aa15.58■□□□□ 0.08
CCDC88C-202ENST00000334448 IGLV3-25P01717 112 aa15.58■□□□□ 0.08
CCDC88C-202ENST00000334448 RB1P06400 928 aa15.58■□□□□ 0.08
CCDC88C-202ENST00000334448 UQCRHP07919 91 aa15.58■□□□□ 0.08
CCDC88C-202ENST00000334448 CETN2P41208 172 aa15.58■□□□□ 0.08
CCDC88C-202ENST00000334448 ARSEP51690 589 aa15.58■□□□□ 0.08
CCDC88C-202ENST00000334448 AIF1P55008 147 aa15.58■□□□□ 0.08
CCDC88C-202ENST00000334448 EIF4EBP2Q13542 120 aaPredicted RBP15.58■□□□□ 0.08
CCDC88C-202ENST00000334448 CYP1B1Q16678 543 aa15.58■□□□□ 0.08
CCDC88C-202ENST00000334448 BSPRYQ5W0U4 402 aa15.58■□□□□ 0.08
CCDC88C-202ENST00000334448 TXNRD3NBQ6F5E7 133 aa15.58■□□□□ 0.08
CCDC88C-202ENST00000334448 DENND5BQ6ZUT9 1274 aa15.58■□□□□ 0.08
CCDC88C-202ENST00000334448 HFE2Q6ZVN8 426 aa15.58■□□□□ 0.08
CCDC88C-202ENST00000334448 MON1AQ86VX9 555 aa15.58■□□□□ 0.08
CCDC88C-202ENST00000334448 SCN4BQ8IWT1 228 aa15.58■□□□□ 0.08
CCDC88C-202ENST00000334448 TTC9BQ8N6N2 239 aa15.58■□□□□ 0.08
CCDC88C-202ENST00000334448 C12orf50Q8NA57 414 aaPredicted RBP15.58■□□□□ 0.08
CCDC88C-202ENST00000334448 SCAMP5Q8TAC9 235 aa15.58■□□□□ 0.08
CCDC88C-202ENST00000334448 UBXN4Q92575 508 aa15.58■□□□□ 0.08
CCDC88C-202ENST00000334448 NDRG1Q92597 394 aaKnown RBP15.58■□□□□ 0.08
CCDC88C-202ENST00000334448 PGLYRP2Q96PD5 576 aa15.58■□□□□ 0.08
CCDC88C-202ENST00000334448 SLITRK1Q96PX8 696 aa15.58■□□□□ 0.08
CCDC88C-202ENST00000334448 PEBP4Q96S96 227 aa15.58■□□□□ 0.08
CCDC88C-202ENST00000334448 RBM12Q9NTZ6 932 aaKnown RBP15.58■□□□□ 0.08
CCDC88C-202ENST00000334448 SLTMQ9NWH9 1034 aaKnown RBP eCLIP15.58■□□□□ 0.08
CCDC88C-202ENST00000334448 GOLGA6L10A0A0M3HER8 536 aa15.57■□□□□ 0.08
CCDC88C-202ENST00000334448 LCHNA4D1U4 455 aa15.57■□□□□ 0.08
CCDC88C-202ENST00000334448 LINC01553A4QN01 128 aa15.57■□□□□ 0.08
CCDC88C-202ENST00000334448 F9P00740 461 aa15.57■□□□□ 0.08
CCDC88C-202ENST00000334448 KRT1P04264 644 aa15.57■□□□□ 0.08
CCDC88C-202ENST00000334448 RDXP35241 583 aaKnown RBP15.57■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms