RNA–Protein interactions for RNA: ENST00000309660.9

PTPN2-201, Transcript of protein tyrosine phosphatase, non-receptor type 2, humanhuman

TSL 1 (best) BASIC

Gene PTPN2, Length 3,467 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN2-201ENST00000309660 NPHS2Q9NP85 383 aa12.03□□□□□ -0.48
PTPN2-201ENST00000309660 SLC17A7Q9P2U7 560 aa12.03□□□□□ -0.48
PTPN2-201ENST00000309660 GRM5P41594 1212 aa12.02□□□□□ -0.48
PTPN2-201ENST00000309660 INCA1Q0VD86 236 aa12.02□□□□□ -0.48
PTPN2-201ENST00000309660 PTK7Q13308 1070 aa12.02□□□□□ -0.48
PTPN2-201ENST00000309660 KLHL38Q2WGJ6 581 aa12.02□□□□□ -0.48
PTPN2-201ENST00000309660 SLC27A1Q6PCB7 646 aa12.02□□□□□ -0.48
PTPN2-201ENST00000309660 FAM131BQ86XD5 332 aa12.02□□□□□ -0.48
PTPN2-201ENST00000309660 PCDH19Q8TAB3 1148 aa12.02□□□□□ -0.48
PTPN2-201ENST00000309660 BRI3BPQ8WY22 251 aa12.02□□□□□ -0.48
PTPN2-201ENST00000309660 MAML3Q96JK9 1138 aa12.02□□□□□ -0.48
PTPN2-201ENST00000309660 TINF2Q9BSI4 451 aa12.02□□□□□ -0.48
PTPN2-201ENST00000309660 SYT17Q9BSW7 474 aa12.02□□□□□ -0.48
PTPN2-201ENST00000309660 CEP41Q9BYV8 373 aa12.02□□□□□ -0.48
PTPN2-201ENST00000309660 GBA2Q9HCG7 927 aaPredicted RBP12.02□□□□□ -0.48
PTPN2-201ENST00000309660 SMG5Q9UPR3 1016 aaKnown RBP12.02□□□□□ -0.48
PTPN2-201ENST00000309660 ACTL7BQ9Y614 415 aa12.02□□□□□ -0.48
PTPN2-201ENST00000309660 TCRBV9S1A1TA0A576 114 aa12.02□□□□□ -0.49
PTPN2-201ENST00000309660 ACAT1P24752 427 aaKnown RBP12.02□□□□□ -0.49
PTPN2-201ENST00000309660 HOXA11P31270 313 aaPredicted RBP12.02□□□□□ -0.49
PTPN2-201ENST00000309660 GABRB2P47870 512 aa12.02□□□□□ -0.49
PTPN2-201ENST00000309660 ELF3P78545 371 aaPredicted RBP12.02□□□□□ -0.49
PTPN2-201ENST00000309660 SLC6A3Q01959 620 aa12.02□□□□□ -0.49
PTPN2-201ENST00000309660 GBE1Q04446 702 aa12.02□□□□□ -0.49
PTPN2-201ENST00000309660 MGAT5Q09328 741 aa12.02□□□□□ -0.49
PTPN2-201ENST00000309660 SETDB1Q15047 1291 aa12.02□□□□□ -0.49
PTPN2-201ENST00000309660 RNF39Q9H2S5 420 aa12.02□□□□□ -0.49
PTPN2-201ENST00000309660 SNX25Q9H3E2 840 aa12.02□□□□□ -0.49
PTPN2-201ENST00000309660 PCDH18Q9HCL0 1135 aa12.02□□□□□ -0.49
PTPN2-201ENST00000309660 SLC24A2Q9UI40 661 aa12.02□□□□□ -0.49
PTPN2-201ENST00000309660 CPA4Q9UI42 421 aa12.02□□□□□ -0.49
PTPN2-201ENST00000309660 SLC12A4Q9UP95 1085 aa12.02□□□□□ -0.49
PTPN2-201ENST00000309660 NME7Q9Y5B8 376 aa12.02□□□□□ -0.49
PTPN2-201ENST00000309660 SIP14410 1827 aa12.02□□□□□ -0.49
PTPN2-201ENST00000309660 STIP1P31948 543 aaKnown RBP12.02□□□□□ -0.49
PTPN2-201ENST00000309660 RABGGTBP53611 331 aa12.02□□□□□ -0.49
PTPN2-201ENST00000309660 NCALDP61601 193 aa12.02□□□□□ -0.49
PTPN2-201ENST00000309660 XRCC4Q13426 336 aa12.02□□□□□ -0.49
PTPN2-201ENST00000309660 DUSP28Q4G0W2 176 aa12.02□□□□□ -0.49
PTPN2-201ENST00000309660 EFHC2Q5JST6 749 aa12.02□□□□□ -0.49
PTPN2-201ENST00000309660 CASC4Q6P4E1 433 aa12.02□□□□□ -0.49
PTPN2-201ENST00000309660 NOTUMQ6P988 496 aa12.02□□□□□ -0.49
PTPN2-201ENST00000309660 OLFML1Q6UWY5 402 aa12.02□□□□□ -0.49
PTPN2-201ENST00000309660 SLC2A14Q8TDB8 520 aa12.02□□□□□ -0.49
PTPN2-201ENST00000309660 CYTH2Q99418 400 aa12.02□□□□□ -0.49
PTPN2-201ENST00000309660 IQCGQ9H095 443 aaKnown RBP12.02□□□□□ -0.49
PTPN2-201ENST00000309660 ACSS3Q9H6R3 686 aa12.02□□□□□ -0.49
PTPN2-201ENST00000309660 SCN1AP35498 2009 aa12.01□□□□□ -0.49
PTPN2-201ENST00000309660 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.01□□□□□ -0.49
PTPN2-201ENST00000309660 NDC80O14777 642 aa12.01□□□□□ -0.49
PTPN2-201ENST00000309660 LPXNO60711 386 aa12.01□□□□□ -0.49
PTPN2-201ENST00000309660 DNAJC8O75937 253 aaPredicted RBP12.01□□□□□ -0.49
PTPN2-201ENST00000309660 CYP2F1P24903 491 aa12.01□□□□□ -0.49
PTPN2-201ENST00000309660 POU5F1BQ06416 359 aa12.01□□□□□ -0.49
PTPN2-201ENST00000309660 FAAP100Q0VG06 881 aa12.01□□□□□ -0.49
PTPN2-201ENST00000309660 SOWAHAQ2M3V2 549 aa12.01□□□□□ -0.49
PTPN2-201ENST00000309660 BOLA3Q53S33 107 aa12.01□□□□□ -0.49
PTPN2-201ENST00000309660 FAM47CQ5HY64 1035 aa12.01□□□□□ -0.49
PTPN2-201ENST00000309660 CYP4V2Q6ZWL3 525 aaPredicted RBP12.01□□□□□ -0.49
PTPN2-201ENST00000309660 LINC01465Q8N7H1 131 aa12.01□□□□□ -0.49
PTPN2-201ENST00000309660 NPLOC4Q8TAT6 608 aa12.01□□□□□ -0.49
PTPN2-201ENST00000309660 VRTNQ9H8Y1 702 aa12.01□□□□□ -0.49
PTPN2-201ENST00000309660 ETNK1Q9HBU6 452 aa12.01□□□□□ -0.49
PTPN2-201ENST00000309660 SENP1Q9P0U3 644 aa12.01□□□□□ -0.49
PTPN2-201ENST00000309660 SEPT10Q9P0V9 454 aa12.01□□□□□ -0.49
PTPN2-201ENST00000309660 A0A0G2JND7 137 aa12.01□□□□□ -0.49
PTPN2-201ENST00000309660 OAS1P00973 400 aaKnown RBP12.01□□□□□ -0.49
PTPN2-201ENST00000309660 TARSP26639 723 aaKnown RBP12.01□□□□□ -0.49
PTPN2-201ENST00000309660 GNL1P36915 607 aaPredicted RBP12.01□□□□□ -0.49
PTPN2-201ENST00000309660 HDAC4P56524 1084 aa12.01□□□□□ -0.49
PTPN2-201ENST00000309660 BEX3Q00994 111 aa12.01□□□□□ -0.49
PTPN2-201ENST00000309660 BMPR2Q13873 1038 aa12.01□□□□□ -0.49
PTPN2-201ENST00000309660 ACAP1Q15027 740 aa12.01□□□□□ -0.49
PTPN2-201ENST00000309660 KYAT1Q16773 422 aa12.01□□□□□ -0.49
PTPN2-201ENST00000309660 FBXO47Q5MNV8 452 aa12.01□□□□□ -0.49
PTPN2-201ENST00000309660 PRPF39Q86UA1 669 aaKnown RBP12.01□□□□□ -0.49
PTPN2-201ENST00000309660 PYROXD2Q8N2H3 581 aa12.01□□□□□ -0.49
PTPN2-201ENST00000309660 FAM111AQ96PZ2 611 aa12.01□□□□□ -0.49
PTPN2-201ENST00000309660 TMEM237Q96Q45 408 aa12.01□□□□□ -0.49
PTPN2-201ENST00000309660 ABHD16BQ9H3Z7 469 aa12.01□□□□□ -0.49
PTPN2-201ENST00000309660 ZC3H7BQ9UGR2 993 aaKnown RBP12.01□□□□□ -0.49
PTPN2-201ENST00000309660 A8MUI8 341 aa12.01□□□□□ -0.49
PTPN2-201ENST00000309660 SMIM10L2AP0DMW4 78 aa12.01□□□□□ -0.49
PTPN2-201ENST00000309660 SMIM10L2BP0DMW5 78 aa12.01□□□□□ -0.49
PTPN2-201ENST00000309660 DCAF4L1Q3SXM0 396 aa12.01□□□□□ -0.49
PTPN2-201ENST00000309660 TDRPQ86YL5 185 aa12.01□□□□□ -0.49
PTPN2-201ENST00000309660 PQLC3Q8N755 202 aa12.01□□□□□ -0.49
PTPN2-201ENST00000309660 TMEM40Q8WWA1 233 aa12.01□□□□□ -0.49
PTPN2-201ENST00000309660 LRRC37BQ96QE4 947 aa12.01□□□□□ -0.49
PTPN2-201ENST00000309660 SLC13A1Q9BZW2 595 aa12.01□□□□□ -0.49
PTPN2-201ENST00000309660 KLC2Q9H0B6 622 aa12.01□□□□□ -0.49
PTPN2-201ENST00000309660 RXFP1Q9HBX9 757 aa12.01□□□□□ -0.49
PTPN2-201ENST00000309660 TMPRSS4Q9NRS4 437 aa12.01□□□□□ -0.49
PTPN2-201ENST00000309660 KIAA1257Q9ULG3 409 aa12.01□□□□□ -0.49
PTPN2-201ENST00000309660 MFHAS1Q9Y4C4 1052 aa12.01□□□□□ -0.49
PTPN2-201ENST00000309660 CLDN5O00501 218 aa12□□□□□ -0.49
PTPN2-201ENST00000309660 CHUKO15111 745 aa12□□□□□ -0.49
PTPN2-201ENST00000309660 STRNO43815 780 aa12□□□□□ -0.49
PTPN2-201ENST00000309660 MYL3P08590 195 aa12□□□□□ -0.49
PTPN2-201ENST00000309660 PYGBP11216 843 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms