RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 E2F8A0AVK6 867 aa20.62■□□□□ 0.89
LIME1-201ENST00000309546 CYP26A1O43174 497 aa20.62■□□□□ 0.89
LIME1-201ENST00000309546 STX10O60499 249 aa20.62■□□□□ 0.89
LIME1-201ENST00000309546 ADH5P11766 374 aa20.62■□□□□ 0.89
LIME1-201ENST00000309546 ACO1P21399 889 aaKnown RBP20.62■□□□□ 0.89
LIME1-201ENST00000309546 TGM1P22735 817 aa20.62■□□□□ 0.89
LIME1-201ENST00000309546 SLC6A11P48066 632 aa20.62■□□□□ 0.89
LIME1-201ENST00000309546 PGFP49763 221 aa20.62■□□□□ 0.89
LIME1-201ENST00000309546 KDSRQ06136 332 aa20.62■□□□□ 0.89
LIME1-201ENST00000309546 CAMKK1Q8N5S9 505 aa20.62■□□□□ 0.89
LIME1-201ENST00000309546 FBXL13Q8NEE6 735 aa20.62■□□□□ 0.89
LIME1-201ENST00000309546 ENGASEQ8NFI3 743 aa20.62■□□□□ 0.89
LIME1-201ENST00000309546 CCDC26Q8TAB7 109 aa20.62■□□□□ 0.89
LIME1-201ENST00000309546 WHAMMQ8TF30 809 aa20.62■□□□□ 0.89
LIME1-201ENST00000309546 HOOK1Q9UJC3 728 aaKnown RBP20.62■□□□□ 0.89
LIME1-201ENST00000309546 PCDHA5Q9Y5H7 936 aa20.62■□□□□ 0.89
LIME1-201ENST00000309546 DYNC1LI1Q9Y6G9 523 aaKnown RBP20.62■□□□□ 0.89
LIME1-201ENST00000309546 CEP250Q9BV73 2442 aa20.61■□□□□ 0.89
LIME1-201ENST00000309546 CCDC163A0A0D9SF12 145 aa20.61■□□□□ 0.89
LIME1-201ENST00000309546 TRIM49BA6NDI0 452 aa20.61■□□□□ 0.89
LIME1-201ENST00000309546 ANTXRLA6NF34 631 aa20.61■□□□□ 0.89
LIME1-201ENST00000309546 K7EQS6 105 aa20.61■□□□□ 0.89
LIME1-201ENST00000309546 AXIN1O15169 862 aa20.61■□□□□ 0.89
LIME1-201ENST00000309546 LY6G5CQ5SRR4 150 aa20.61■□□□□ 0.89
LIME1-201ENST00000309546 PPP1R26Q5T8A7 1209 aaPredicted RBP20.61■□□□□ 0.89
LIME1-201ENST00000309546 RHBDF2Q6PJF5 856 aa20.61■□□□□ 0.89
LIME1-201ENST00000309546 C12orf40Q86WS4 652 aa20.61■□□□□ 0.89
LIME1-201ENST00000309546 BBS7Q8IWZ6 715 aa20.61■□□□□ 0.89
LIME1-201ENST00000309546 USP33Q8TEY7 942 aa20.61■□□□□ 0.89
LIME1-201ENST00000309546 WBP2Q969T9 261 aa20.61■□□□□ 0.89
LIME1-201ENST00000309546 HEXIM2Q96MH2 286 aaKnown RBP20.61■□□□□ 0.89
LIME1-201ENST00000309546 SEMA4GQ9NTN9 838 aa20.61■□□□□ 0.89
LIME1-201ENST00000309546 RAB20Q9NX57 234 aa20.61■□□□□ 0.89
LIME1-201ENST00000309546 DLL3Q9NYJ7 618 aa20.61■□□□□ 0.89
LIME1-201ENST00000309546 CDV3Q9UKY7 258 aaKnown RBP20.61■□□□□ 0.89
LIME1-201ENST00000309546 PRR5-ARHGAP8B1AHC4 643 aa20.6■□□□□ 0.89
LIME1-201ENST00000309546 HHLA1C9JL84 531 aa20.6■□□□□ 0.89
LIME1-201ENST00000309546 APBB3O95704 486 aa20.6■□□□□ 0.89
LIME1-201ENST00000309546 TBX18O95935 607 aa20.6■□□□□ 0.89
LIME1-201ENST00000309546 APODP05090 189 aa20.6■□□□□ 0.89
LIME1-201ENST00000309546 PMS1P54277 932 aaKnown RBP20.6■□□□□ 0.89
LIME1-201ENST00000309546 ARHGAP8P85298 464 aa20.6■□□□□ 0.89
LIME1-201ENST00000309546 ANKRD40Q6AI12 368 aa20.6■□□□□ 0.89
LIME1-201ENST00000309546 CACNA2D4Q7Z3S7 1137 aa20.6■□□□□ 0.89
LIME1-201ENST00000309546 KBTBD6Q86V97 674 aa20.6■□□□□ 0.89
LIME1-201ENST00000309546 SFTPA1Q8IWL2 248 aa20.6■□□□□ 0.89
LIME1-201ENST00000309546 CCDC33Q8N5R6 958 aa20.6■□□□□ 0.89
LIME1-201ENST00000309546 TSTD1Q8NFU3 115 aa20.6■□□□□ 0.89
LIME1-201ENST00000309546 OTUB2Q96DC9 234 aa20.6■□□□□ 0.89
LIME1-201ENST00000309546 PNKPQ96T60 521 aa20.6■□□□□ 0.89
LIME1-201ENST00000309546 ARID3AQ99856 593 aa20.6■□□□□ 0.89
LIME1-201ENST00000309546 CISHQ9NSE2 258 aa20.6■□□□□ 0.89
LIME1-201ENST00000309546 SCML2Q9UQR0 700 aa20.6■□□□□ 0.89
LIME1-201ENST00000309546 SLC16A3O15427 465 aaKnown RBP20.59■□□□□ 0.89
LIME1-201ENST00000309546 LRP3O75074 770 aa20.59■□□□□ 0.89
LIME1-201ENST00000309546 KAT7O95251 611 aa20.59■□□□□ 0.89
LIME1-201ENST00000309546 EIF2DP41214 584 aaKnown RBP20.59■□□□□ 0.89
LIME1-201ENST00000309546 DGKEP52429 567 aa20.59■□□□□ 0.89
LIME1-201ENST00000309546 FKBP3Q00688 224 aaKnown RBP20.59■□□□□ 0.89
LIME1-201ENST00000309546 GAD2Q05329 585 aa20.59■□□□□ 0.89
LIME1-201ENST00000309546 MESP2Q0VG99 397 aa20.59■□□□□ 0.89
LIME1-201ENST00000309546 ANO4Q32M45 955 aa20.59■□□□□ 0.89
LIME1-201ENST00000309546 CBWD6Q4V339 395 aa20.59■□□□□ 0.89
LIME1-201ENST00000309546 COBLL1Q53SF7 1204 aa20.59■□□□□ 0.89
LIME1-201ENST00000309546 CBWD3Q5JTY5 395 aa20.59■□□□□ 0.89
LIME1-201ENST00000309546 CBWD5Q5RIA9 395 aa20.59■□□□□ 0.89
LIME1-201ENST00000309546 ISM2Q6H9L7 571 aa20.59■□□□□ 0.89
LIME1-201ENST00000309546 NMUR1Q9HB89 426 aa20.59■□□□□ 0.89
LIME1-201ENST00000309546 ARHGEF4Q9NR80 690 aa20.59■□□□□ 0.89
LIME1-201ENST00000309546 OSER1Q9NX31 292 aa20.59■□□□□ 0.89
LIME1-201ENST00000309546 NUDT5Q9UKK9 219 aa20.59■□□□□ 0.89
LIME1-201ENST00000309546 SDK1Q7Z5N4 2213 aa20.59■□□□□ 0.89
LIME1-201ENST00000309546 A0A1W2PQH9 124 aa20.58■□□□□ 0.89
LIME1-201ENST00000309546 PALM2-AKAP2B1ALY0 433 aaPredicted RBP20.58■□□□□ 0.89
LIME1-201ENST00000309546 SDHBP21912 280 aa20.58■□□□□ 0.89
LIME1-201ENST00000309546 ATP5C1P36542 298 aaKnown RBP20.58■□□□□ 0.89
LIME1-201ENST00000309546 GOLGA8FQ08AF8 430 aa20.58■□□□□ 0.89
LIME1-201ENST00000309546 GOLGA8DPQ0D2H9 430 aa20.58■□□□□ 0.89
LIME1-201ENST00000309546 STIM1Q13586 685 aa20.58■□□□□ 0.89
LIME1-201ENST00000309546 BTBD8Q5XKL5 378 aa20.58■□□□□ 0.89
LIME1-201ENST00000309546 PRR23CQ6ZRP0 262 aa20.58■□□□□ 0.89
LIME1-201ENST00000309546 TTC30AQ86WT1 665 aa20.58■□□□□ 0.89
LIME1-201ENST00000309546 NAT16Q8N8M0 369 aa20.58■□□□□ 0.89
LIME1-201ENST00000309546 TATDN2Q93075 761 aa20.58■□□□□ 0.89
LIME1-201ENST00000309546 TIGD1Q96MW7 591 aa20.58■□□□□ 0.89
LIME1-201ENST00000309546 DUSP16Q9BY84 665 aa20.58■□□□□ 0.89
LIME1-201ENST00000309546 PNPLA8Q9NP80 782 aa20.58■□□□□ 0.89
LIME1-201ENST00000309546 CYLDQ9NQC7 956 aa20.58■□□□□ 0.89
LIME1-201ENST00000309546 NAGPAQ9UK23 515 aa20.58■□□□□ 0.89
LIME1-201ENST00000309546 LOC105378220A0A1B0GUY1 285 aaPredicted RBP20.57■□□□□ 0.88
LIME1-201ENST00000309546 MDM4O15151 490 aa20.57■□□□□ 0.88
LIME1-201ENST00000309546 RARGP13631 454 aa20.57■□□□□ 0.88
LIME1-201ENST00000309546 TIE1P35590 1138 aa20.57■□□□□ 0.88
LIME1-201ENST00000309546 KIF11P52732 1056 aa20.57■□□□□ 0.88
LIME1-201ENST00000309546 MCCD1P59942 119 aaPredicted RBP20.57■□□□□ 0.88
LIME1-201ENST00000309546 LRRC63Q05C16 580 aa20.57■□□□□ 0.88
LIME1-201ENST00000309546 CCDC6Q16204 474 aa20.57■□□□□ 0.88
LIME1-201ENST00000309546 CSRP2Q16527 193 aa20.57■□□□□ 0.88
LIME1-201ENST00000309546 ANO7Q6IWH7 933 aa20.57■□□□□ 0.88
LIME1-201ENST00000309546 ZC3H3Q8IXZ2 948 aaKnown RBP20.57■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms