RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 CAVIN3Q969G5 261 aa14.3□□□□□ -0.12
CSPG4-201ENST00000308508 L2HGDHQ9H9P8 463 aa14.3□□□□□ -0.12
CSPG4-201ENST00000308508 IGSF1Q8N6C5 1336 aa14.3□□□□□ -0.12
CSPG4-201ENST00000308508 TGFBR2P37173 567 aa14.3□□□□□ -0.12
CSPG4-201ENST00000308508 ZCCHC8Q6NZY4 707 aaKnown RBP14.3□□□□□ -0.12
CSPG4-201ENST00000308508 CCDC33Q8N5R6 958 aa14.3□□□□□ -0.12
CSPG4-201ENST00000308508 UGT2B28Q9BY64 529 aa14.3□□□□□ -0.12
CSPG4-201ENST00000308508 MAGI2Q86UL8 1455 aa14.3□□□□□ -0.12
CSPG4-201ENST00000308508 MYL12BO14950 172 aa14.3□□□□□ -0.12
CSPG4-201ENST00000308508 TNFRSF21O75509 655 aa14.3□□□□□ -0.12
CSPG4-201ENST00000308508 KLRC1P26715 233 aa14.3□□□□□ -0.12
CSPG4-201ENST00000308508 PLIN5Q00G26 463 aa14.3□□□□□ -0.12
CSPG4-201ENST00000308508 ITGA9Q13797 1035 aa14.3□□□□□ -0.12
CSPG4-201ENST00000308508 ERGIC2Q96RQ1 377 aa14.3□□□□□ -0.12
CSPG4-201ENST00000308508 MYLK2Q9H1R3 596 aa14.3□□□□□ -0.12
CSPG4-201ENST00000308508 METTL5Q9NRN9 209 aaKnown RBP14.3□□□□□ -0.12
CSPG4-201ENST00000308508 DOLKQ9UPQ8 538 aa14.3□□□□□ -0.12
CSPG4-201ENST00000308508 CLOCKO15516 846 aa14.29□□□□□ -0.12
CSPG4-201ENST00000308508 PABPC1P11940 636 aaKnown RBP14.29□□□□□ -0.12
CSPG4-201ENST00000308508 ATP6V1C1P21283 382 aa14.29□□□□□ -0.12
CSPG4-201ENST00000308508 JAK1P23458 1154 aa14.29□□□□□ -0.12
CSPG4-201ENST00000308508 YWHAZP63104 245 aaKnown RBP14.29□□□□□ -0.12
CSPG4-201ENST00000308508 BOLA3Q53S33 107 aa14.29□□□□□ -0.12
CSPG4-201ENST00000308508 GPAT2Q6NUI2 795 aa14.29□□□□□ -0.12
CSPG4-201ENST00000308508 ARMCX6Q7L4S7 300 aa14.29□□□□□ -0.12
CSPG4-201ENST00000308508 REXO1L1PQ8IX06 675 aa14.29□□□□□ -0.12
CSPG4-201ENST00000308508 KCTD17Q8N5Z5 321 aa14.29□□□□□ -0.12
CSPG4-201ENST00000308508 ACTRT1Q8TDG2 376 aa14.29□□□□□ -0.12
CSPG4-201ENST00000308508 CINPQ9BW66 212 aaPredicted RBP14.29□□□□□ -0.12
CSPG4-201ENST00000308508 CPVLQ9H3G5 476 aa14.29□□□□□ -0.12
CSPG4-201ENST00000308508 SLC38A7Q9NVC3 462 aa14.29□□□□□ -0.12
CSPG4-201ENST00000308508 GPRC5DQ9NZD1 345 aa14.29□□□□□ -0.12
CSPG4-201ENST00000308508 VTI1BQ9UEU0 232 aa14.29□□□□□ -0.12
CSPG4-201ENST00000308508 SV2CQ496J9 727 aa14.29□□□□□ -0.12
CSPG4-201ENST00000308508 TMEM63BQ5T3F8 832 aa14.29□□□□□ -0.12
CSPG4-201ENST00000308508 ACAD10Q6JQN1 1059 aa14.29□□□□□ -0.12
CSPG4-201ENST00000308508 CDK20Q8IZL9 346 aa14.29□□□□□ -0.12
CSPG4-201ENST00000308508 FNIP1Q8TF40 1166 aa14.29□□□□□ -0.12
CSPG4-201ENST00000308508 MTM1Q13496 603 aa14.29□□□□□ -0.12
CSPG4-201ENST00000308508 OOSP2Q86WS3 158 aa14.29□□□□□ -0.12
CSPG4-201ENST00000308508 SGF29Q96ES7 293 aa14.29□□□□□ -0.12
CSPG4-201ENST00000308508 KLHL1Q9NR64 748 aa14.29□□□□□ -0.12
CSPG4-201ENST00000308508 PLEKHG2Q9H7P9 1386 aa14.29□□□□□ -0.12
CSPG4-201ENST00000308508 CCDC182A6NF36 153 aa14.29□□□□□ -0.12
CSPG4-201ENST00000308508 ANKS6Q68DC2 871 aa14.29□□□□□ -0.12
CSPG4-201ENST00000308508 DHFR2Q86XF0 187 aa14.29□□□□□ -0.12
CSPG4-201ENST00000308508 RTKN2Q8IZC4 609 aa14.29□□□□□ -0.12
CSPG4-201ENST00000308508 FAM120BQ96EK7 910 aaKnown RBP14.29□□□□□ -0.12
CSPG4-201ENST00000308508 POLR1BQ9H9Y6 1135 aa14.29□□□□□ -0.12
CSPG4-201ENST00000308508 MROH7-TTC4A0A0A0MT08 1334 aa14.29□□□□□ -0.12
CSPG4-201ENST00000308508 ZNF335Q9H4Z2 1342 aaPredicted RBP14.29□□□□□ -0.12
CSPG4-201ENST00000308508 CD3EAPO15446 510 aaKnown RBP14.29□□□□□ -0.12
CSPG4-201ENST00000308508 PAICSP22234 425 aaKnown RBP14.29□□□□□ -0.12
CSPG4-201ENST00000308508 GSTA3Q16772 222 aa14.29□□□□□ -0.12
CSPG4-201ENST00000308508 SLC44A2Q8IWA5 706 aaPredicted RBP14.29□□□□□ -0.12
CSPG4-201ENST00000308508 TCF7L2Q9NQB0 619 aa14.29□□□□□ -0.12
CSPG4-201ENST00000308508 TUBE1Q9UJT0 475 aa14.29□□□□□ -0.12
CSPG4-201ENST00000308508 PIN4Q9Y237 131 aaKnown RBP14.29□□□□□ -0.12
CSPG4-201ENST00000308508 CPDO75976 1380 aa14.29□□□□□ -0.12
CSPG4-201ENST00000308508 H3BMM5 538 aa14.29□□□□□ -0.12
CSPG4-201ENST00000308508 CCNG1P51959 295 aa14.29□□□□□ -0.12
CSPG4-201ENST00000308508 NME5P56597 212 aa14.29□□□□□ -0.12
CSPG4-201ENST00000308508 KCTD21Q4G0X4 260 aa14.29□□□□□ -0.12
CSPG4-201ENST00000308508 AGKQ53H12 422 aa14.29□□□□□ -0.12
CSPG4-201ENST00000308508 PAFAH2Q99487 392 aa14.29□□□□□ -0.12
CSPG4-201ENST00000308508 PADI4Q9UM07 663 aa14.29□□□□□ -0.12
CSPG4-201ENST00000308508 UBDO15205 165 aa14.28□□□□□ -0.12
CSPG4-201ENST00000308508 LDLRP01130 860 aa14.28□□□□□ -0.12
CSPG4-201ENST00000308508 HARS2P49590 506 aaKnown RBP14.28□□□□□ -0.12
CSPG4-201ENST00000308508 GEMP55040 296 aa14.28□□□□□ -0.12
CSPG4-201ENST00000308508 ARHGEF19Q8IW93 802 aa14.28□□□□□ -0.12
CSPG4-201ENST00000308508 TRPC4APQ8TEL6 797 aa14.28□□□□□ -0.12
CSPG4-201ENST00000308508 MUTP22033 750 aa14.28□□□□□ -0.12
CSPG4-201ENST00000308508 TKTP29401 623 aaKnown RBP14.28□□□□□ -0.12
CSPG4-201ENST00000308508 ITGADQ13349 1161 aa14.28□□□□□ -0.12
CSPG4-201ENST00000308508 KLHDC7AQ5VTJ3 777 aa14.28□□□□□ -0.12
CSPG4-201ENST00000308508 EXOC3L1Q86VI1 746 aa14.28□□□□□ -0.12
CSPG4-201ENST00000308508 FAM228AQ86W67 206 aa14.28□□□□□ -0.12
CSPG4-201ENST00000308508 NSMCE2Q96MF7 247 aa14.28□□□□□ -0.12
CSPG4-201ENST00000308508 DYRK3O43781 588 aa14.28□□□□□ -0.12
CSPG4-201ENST00000308508 ANXA6P08133 673 aa14.28□□□□□ -0.12
CSPG4-201ENST00000308508 CCDC130P13994 396 aa14.28□□□□□ -0.12
CSPG4-201ENST00000308508 CCNA2P20248 432 aa14.28□□□□□ -0.12
CSPG4-201ENST00000308508 NOS3P29474 1203 aa14.28□□□□□ -0.12
CSPG4-201ENST00000308508 ZNF284Q2VY69 593 aa14.28□□□□□ -0.12
CSPG4-201ENST00000308508 PEG10Q86TG7 708 aaKnown RBP14.28□□□□□ -0.12
CSPG4-201ENST00000308508 EXD1Q8NHP7 514 aa14.28□□□□□ -0.12
CSPG4-201ENST00000308508 EPB41L4AQ9HCS5 686 aaPredicted RBP14.28□□□□□ -0.12
CSPG4-201ENST00000308508 ARHGEF40Q8TER5 1519 aa14.28□□□□□ -0.12
CSPG4-201ENST00000308508 TMEM114B3SHH9 223 aa14.28□□□□□ -0.12
CSPG4-201ENST00000308508 EXTL3O43909 919 aa14.28□□□□□ -0.12
CSPG4-201ENST00000308508 PCSK1P29120 753 aa14.28□□□□□ -0.12
CSPG4-201ENST00000308508 SFSWAPQ12872 951 aaKnown RBP14.28□□□□□ -0.12
CSPG4-201ENST00000308508 MAD2L1Q13257 205 aaPredicted RBP14.28□□□□□ -0.12
CSPG4-201ENST00000308508 DGKDQ16760 1214 aa14.28□□□□□ -0.12
CSPG4-201ENST00000308508 TCHHL1Q5QJ38 904 aaPredicted RBP14.28□□□□□ -0.12
CSPG4-201ENST00000308508 CENPIQ92674 756 aaPredicted RBP14.28□□□□□ -0.12
CSPG4-201ENST00000308508 NUAK2Q9H093 628 aa14.28□□□□□ -0.12
CSPG4-201ENST00000308508 NRDE2Q9H7Z3 1164 aa14.28□□□□□ -0.12
CSPG4-201ENST00000308508 LRRC40Q9H9A6 602 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms