RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 ACSF2Q96CM8 615 aaPredicted RBP12.11□□□□□ -0.47
SHROOM3-201ENST00000296043 TRIM54Q9BYV2 358 aa12.11□□□□□ -0.47
SHROOM3-201ENST00000296043 CAMSAP3Q9P1Y5 1249 aaPredicted RBP12.11□□□□□ -0.47
SHROOM3-201ENST00000296043 GAS2O43903 313 aaKnown RBP12.11□□□□□ -0.47
SHROOM3-201ENST00000296043 SLC15A2Q16348 729 aa12.11□□□□□ -0.47
SHROOM3-201ENST00000296043 HIPK1Q86Z02 1210 aa12.11□□□□□ -0.47
SHROOM3-201ENST00000296043 EID3Q8N140 333 aa12.11□□□□□ -0.47
SHROOM3-201ENST00000296043 MARCH7Q9H992 704 aa12.11□□□□□ -0.47
SHROOM3-201ENST00000296043 DMGDHQ9UI17 866 aaKnown RBP12.11□□□□□ -0.47
SHROOM3-201ENST00000296043 CERKLQ49MI3 558 aaPredicted RBP12.11□□□□□ -0.47
SHROOM3-201ENST00000296043 PPP1R15BQ5SWA1 713 aa12.11□□□□□ -0.47
SHROOM3-201ENST00000296043 SLC44A2Q8IWA5 706 aaPredicted RBP12.11□□□□□ -0.47
SHROOM3-201ENST00000296043 SEMA4DQ92854 862 aa12.11□□□□□ -0.47
SHROOM3-201ENST00000296043 DNAJC1Q96KC8 554 aaKnown RBP12.11□□□□□ -0.47
SHROOM3-201ENST00000296043 STK33Q9BYT3 514 aa12.11□□□□□ -0.47
SHROOM3-201ENST00000296043 LOC110117498-PIK3R3F6TDL0 507 aa12.11□□□□□ -0.47
SHROOM3-201ENST00000296043 PROCP04070 461 aa12.11□□□□□ -0.47
SHROOM3-201ENST00000296043 OSBPL6Q9BZF3 934 aa12.11□□□□□ -0.47
SHROOM3-201ENST00000296043 TOR4AQ9NXH8 423 aa12.11□□□□□ -0.47
SHROOM3-201ENST00000296043 OGDHLQ9ULD0 1010 aa12.11□□□□□ -0.47
SHROOM3-201ENST00000296043 PDS5AQ29RF7 1337 aaKnown RBP12.11□□□□□ -0.47
SHROOM3-201ENST00000296043 YTHDF3Q7Z739 585 aaKnown RBP12.11□□□□□ -0.47
SHROOM3-201ENST00000296043 DCAF5Q96JK2 942 aa12.11□□□□□ -0.47
SHROOM3-201ENST00000296043 KIAA1586Q9HCI6 787 aa12.11□□□□□ -0.47
SHROOM3-201ENST00000296043 LMCD1Q9NZU5 365 aa12.11□□□□□ -0.47
SHROOM3-201ENST00000296043 SYNMO15061 1565 aa12.11□□□□□ -0.47
SHROOM3-201ENST00000296043 MYL12AP19105 171 aa12.11□□□□□ -0.47
SHROOM3-201ENST00000296043 TGM2P21980 687 aa12.11□□□□□ -0.47
SHROOM3-201ENST00000296043 FAXCQ5TGI0 409 aa12.11□□□□□ -0.47
SHROOM3-201ENST00000296043 MSL3Q8N5Y2 521 aaKnown RBP12.11□□□□□ -0.47
SHROOM3-201ENST00000296043 DYNLL2Q96FJ2 89 aa12.11□□□□□ -0.47
SHROOM3-201ENST00000296043 SLC4A9Q96Q91 983 aa12.11□□□□□ -0.47
SHROOM3-201ENST00000296043 UCKL1Q9NWZ5 548 aa12.11□□□□□ -0.47
SHROOM3-201ENST00000296043 UGP2Q16851 508 aa12.11□□□□□ -0.47
SHROOM3-201ENST00000296043 PRMT9Q6P2P2 845 aa12.11□□□□□ -0.47
SHROOM3-201ENST00000296043 DYRK4Q9NR20 520 aa12.11□□□□□ -0.47
SHROOM3-201ENST00000296043 AASDHPPTQ9NRN7 309 aa12.11□□□□□ -0.47
SHROOM3-201ENST00000296043 CLEC11AQ9Y240 323 aa12.11□□□□□ -0.47
SHROOM3-201ENST00000296043 KDM5CP41229 1560 aa12.11□□□□□ -0.47
SHROOM3-201ENST00000296043 PTPRKQ15262 1439 aa12.11□□□□□ -0.47
SHROOM3-201ENST00000296043 SLC1A6P48664 564 aa12.11□□□□□ -0.47
SHROOM3-201ENST00000296043 ATP6AP1LQ52LC2 224 aa12.11□□□□□ -0.47
SHROOM3-201ENST00000296043 FRMD5Q7Z6J6 570 aa12.11□□□□□ -0.47
SHROOM3-201ENST00000296043 CCDC36Q8IYA8 594 aa12.11□□□□□ -0.47
SHROOM3-201ENST00000296043 RNF145Q96MT1 663 aa12.11□□□□□ -0.47
SHROOM3-201ENST00000296043 RGS17Q9UGC6 210 aaPredicted RBP12.11□□□□□ -0.47
SHROOM3-201ENST00000296043 ATP10DQ9P241 1426 aa12.11□□□□□ -0.47
SHROOM3-201ENST00000296043 UBXN8O00124 270 aa12.1□□□□□ -0.47
SHROOM3-201ENST00000296043 EXTL3O43909 919 aa12.1□□□□□ -0.47
SHROOM3-201ENST00000296043 CACHD1Q5VU97 1274 aa12.1□□□□□ -0.47
SHROOM3-201ENST00000296043 AMIGO2Q86SJ2 522 aa12.1□□□□□ -0.47
SHROOM3-201ENST00000296043 RAB43Q86YS6 212 aa12.1□□□□□ -0.47
SHROOM3-201ENST00000296043 TSEN2Q8NCE0 465 aaKnown RBP12.1□□□□□ -0.47
SHROOM3-201ENST00000296043 SETD9Q8NE22 299 aa12.1□□□□□ -0.47
SHROOM3-201ENST00000296043 ZNF669Q96BR6 464 aaPredicted RBP12.1□□□□□ -0.47
SHROOM3-201ENST00000296043 TRMUO75648 421 aaKnown RBP12.1□□□□□ -0.47
SHROOM3-201ENST00000296043 NPR3P17342 541 aa12.1□□□□□ -0.47
SHROOM3-201ENST00000296043 DDX39BQ13838 428 aaKnown RBP12.1□□□□□ -0.47
SHROOM3-201ENST00000296043 CNPY1Q3B7I2 92 aa12.1□□□□□ -0.47
SHROOM3-201ENST00000296043 C11orf63Q6NUN7 778 aa12.1□□□□□ -0.47
SHROOM3-201ENST00000296043 TTI2Q6NXR4 508 aa12.1□□□□□ -0.47
SHROOM3-201ENST00000296043 RHOBTB2Q9BYZ6 727 aa12.1□□□□□ -0.47
SHROOM3-201ENST00000296043 CRNNQ9UBG3 495 aaPredicted RBP12.1□□□□□ -0.47
SHROOM3-201ENST00000296043 SPASTQ9UBP0 616 aa12.1□□□□□ -0.47
SHROOM3-201ENST00000296043 ATPIF1Q9UII2 106 aa12.1□□□□□ -0.47
SHROOM3-201ENST00000296043 DENND5BQ6ZUT9 1274 aa12.1□□□□□ -0.47
SHROOM3-201ENST00000296043 C8orf59Q8N0T1 100 aaPredicted RBP12.1□□□□□ -0.47
SHROOM3-201ENST00000296043 ZNF333Q96JL9 665 aa12.1□□□□□ -0.47
SHROOM3-201ENST00000296043 TCF7L2Q9NQB0 619 aa12.1□□□□□ -0.47
SHROOM3-201ENST00000296043 KDM5BQ9UGL1 1544 aa12.1□□□□□ -0.47
SHROOM3-201ENST00000296043 FNTAP49354 379 aa12.1□□□□□ -0.47
SHROOM3-201ENST00000296043 NT5C2P49902 561 aa12.1□□□□□ -0.47
SHROOM3-201ENST00000296043 IPMKQ8NFU5 416 aa12.1□□□□□ -0.47
SHROOM3-201ENST00000296043 KBTBD8Q8NFY9 601 aa12.1□□□□□ -0.47
SHROOM3-201ENST00000296043 ZHX1-C8orf76Q96EF9 292 aa12.1□□□□□ -0.47
SHROOM3-201ENST00000296043 PPP1R10Q96QC0 940 aaKnown RBP12.1□□□□□ -0.47
SHROOM3-201ENST00000296043 CCND2P30279 289 aa12.1□□□□□ -0.47
SHROOM3-201ENST00000296043 ARF3P61204 181 aaPredicted RBP12.1□□□□□ -0.47
SHROOM3-201ENST00000296043 ARF1P84077 181 aaKnown RBP12.1□□□□□ -0.47
SHROOM3-201ENST00000296043 MT-CO1P00395 513 aa12.1□□□□□ -0.47
SHROOM3-201ENST00000296043 STX4Q12846 297 aa12.1□□□□□ -0.47
SHROOM3-201ENST00000296043 SH3GLB2Q9NR46 395 aa12.1□□□□□ -0.47
SHROOM3-201ENST00000296043 TGFBR2P37173 567 aa12.1□□□□□ -0.47
SHROOM3-201ENST00000296043 SLC9A3P48764 834 aa12.1□□□□□ -0.47
SHROOM3-201ENST00000296043 EIF2S3LQ2VIR3 472 aaKnown RBP12.1□□□□□ -0.47
SHROOM3-201ENST00000296043 TXNDC11Q6PKC3 985 aa12.1□□□□□ -0.47
SHROOM3-201ENST00000296043 LATS2Q9NRM7 1088 aa12.1□□□□□ -0.47
SHROOM3-201ENST00000296043 RTCBQ9Y3I0 505 aaKnown RBP12.1□□□□□ -0.47
SHROOM3-201ENST00000296043 CACNA1FO60840 1977 aa12.1□□□□□ -0.47
SHROOM3-201ENST00000296043 ULK3Q6PHR2 472 aa12.1□□□□□ -0.47
SHROOM3-201ENST00000296043 USP17L6PQ6QN14 398 aa12.1□□□□□ -0.47
SHROOM3-201ENST00000296043 ABRAXAS1Q6UWZ7 409 aa12.1□□□□□ -0.47
SHROOM3-201ENST00000296043 FAM9CQ8IZT9 166 aa12.1□□□□□ -0.47
SHROOM3-201ENST00000296043 KRT78Q8N1N4 520 aa12.1□□□□□ -0.47
SHROOM3-201ENST00000296043 PHC3Q8NDX5 983 aa12.1□□□□□ -0.47
SHROOM3-201ENST00000296043 SPIRE2Q8WWL2 714 aa12.1□□□□□ -0.47
SHROOM3-201ENST00000296043 PUS3Q9BZE2 481 aaKnown RBP12.1□□□□□ -0.47
SHROOM3-201ENST00000296043 PTPRHQ9HD43 1115 aa12.1□□□□□ -0.47
SHROOM3-201ENST00000296043 TBXAS1P24557 533 aaPredicted RBP12.1□□□□□ -0.47
SHROOM3-201ENST00000296043 SPIRE1Q08AE8 756 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms