RNA–Protein interactions for RNA: ENST00000292535.11

CUX1-201, Transcript of cut like homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CUX1, Length 13,747 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-201ENST00000292535 OR1G1P47890 313 aa9.62□□□□□ -0.87
CUX1-201ENST00000292535 GNA13Q14344 377 aa9.62□□□□□ -0.87
CUX1-201ENST00000292535 GLMNQ92990 594 aa9.62□□□□□ -0.87
CUX1-201ENST00000292535 ALDH8A1Q9H2A2 487 aaPredicted RBP9.62□□□□□ -0.87
CUX1-201ENST00000292535 OSGEPL1Q9H4B0 414 aa9.62□□□□□ -0.87
CUX1-201ENST00000292535 ITGA8P53708 1063 aa9.62□□□□□ -0.87
CUX1-201ENST00000292535 SYCP2LQ5T4T6 812 aa9.62□□□□□ -0.87
CUX1-201ENST00000292535 LRRC40Q9H9A6 602 aa9.62□□□□□ -0.87
CUX1-201ENST00000292535 SAMD9LQ8IVG5 1584 aa9.62□□□□□ -0.87
CUX1-201ENST00000292535 A0A087WZ62 844 aa9.62□□□□□ -0.87
CUX1-201ENST00000292535 CNOT3O75175 753 aaKnown RBP9.62□□□□□ -0.87
CUX1-201ENST00000292535 SUPT7LO94864 414 aa9.62□□□□□ -0.87
CUX1-201ENST00000292535 CCDC130P13994 396 aa9.62□□□□□ -0.87
CUX1-201ENST00000292535 RPL10AP62906 217 aaKnown RBP9.62□□□□□ -0.87
CUX1-201ENST00000292535 C1QTNF7Q9BXJ2 289 aa9.62□□□□□ -0.87
CUX1-201ENST00000292535 ADRM1Q16186 407 aa9.62□□□□□ -0.87
CUX1-201ENST00000292535 GALNT4Q8N4A0 578 aa9.62□□□□□ -0.87
CUX1-201ENST00000292535 NAT9Q9BTE0 207 aa9.62□□□□□ -0.87
CUX1-201ENST00000292535 PRR23AA6NEV1 266 aa9.62□□□□□ -0.87
CUX1-201ENST00000292535 IL6P05231 212 aa9.62□□□□□ -0.87
CUX1-201ENST00000292535 TKTP29401 623 aaKnown RBP9.62□□□□□ -0.87
CUX1-201ENST00000292535 PPIL2Q13356 520 aa9.62□□□□□ -0.87
CUX1-201ENST00000292535 MTSS1LQ765P7 747 aa9.62□□□□□ -0.87
CUX1-201ENST00000292535 MAGEC3Q8TD91 643 aa9.62□□□□□ -0.87
CUX1-201ENST00000292535 KIFC1Q9BW19 673 aa9.62□□□□□ -0.87
CUX1-201ENST00000292535 FBXO44Q9H4M3 255 aa9.62□□□□□ -0.87
CUX1-201ENST00000292535 TFRCP02786 760 aaKnown RBP9.61□□□□□ -0.87
CUX1-201ENST00000292535 NUDT2P50583 147 aa9.61□□□□□ -0.87
CUX1-201ENST00000292535 FUT11Q495W5 492 aa9.61□□□□□ -0.87
CUX1-201ENST00000292535 F9P00740 461 aa9.61□□□□□ -0.87
CUX1-201ENST00000292535 RCVRNP35243 200 aa9.61□□□□□ -0.87
CUX1-201ENST00000292535 HIRAP54198 1017 aaPredicted RBP9.61□□□□□ -0.87
CUX1-201ENST00000292535 ZNF280DQ6N043 979 aa9.61□□□□□ -0.87
CUX1-201ENST00000292535 BRINP3Q76B58 766 aa9.61□□□□□ -0.87
CUX1-201ENST00000292535 CCT8L2Q96SF2 557 aa9.61□□□□□ -0.87
CUX1-201ENST00000292535 SLITRK2Q9H156 845 aa9.61□□□□□ -0.87
CUX1-201ENST00000292535 ZC3H11AO75152 810 aaKnown RBP eCLIP9.61□□□□□ -0.873e-6■■■■□ 25.7
CUX1-201ENST00000292535 KRT34O76011 436 aa9.61□□□□□ -0.87
CUX1-201ENST00000292535 KRT6BP04259 564 aa9.61□□□□□ -0.87
CUX1-201ENST00000292535 AVPR1AP37288 418 aa9.61□□□□□ -0.87
CUX1-201ENST00000292535 KRT6CP48668 564 aa9.61□□□□□ -0.87
CUX1-201ENST00000292535 ADGRF2Q8IZF7 708 aa9.61□□□□□ -0.87
CUX1-201ENST00000292535 AGBL3Q8NEM8 1001 aa9.61□□□□□ -0.87
CUX1-201ENST00000292535 ITSN1Q15811 1721 aa9.61□□□□□ -0.87
CUX1-201ENST00000292535 GLP2RO95838 553 aa9.61□□□□□ -0.87
CUX1-201ENST00000292535 SRGNP10124 158 aa9.61□□□□□ -0.87
CUX1-201ENST00000292535 PCNAP12004 261 aa9.61□□□□□ -0.87
CUX1-201ENST00000292535 GPRASP2Q96D09 838 aa9.61□□□□□ -0.87
CUX1-201ENST00000292535 DNAJC1Q96KC8 554 aaKnown RBP9.61□□□□□ -0.87
CUX1-201ENST00000292535 RIT2Q99578 217 aa9.61□□□□□ -0.87
CUX1-201ENST00000292535 MTMR4Q9NYA4 1195 aa9.61□□□□□ -0.87
CUX1-201ENST00000292535 STON1Q9Y6Q2 735 aa9.61□□□□□ -0.87
CUX1-201ENST00000292535 IGF2BP3O00425 579 aaKnown RBP eCLIP9.61□□□□□ -0.87
CUX1-201ENST00000292535 ZNF484Q5JVG2 852 aa9.61□□□□□ -0.87
CUX1-201ENST00000292535 FAM182BQ5T319 152 aa9.61□□□□□ -0.87
CUX1-201ENST00000292535 VN1R5Q7Z5H4 357 aa9.61□□□□□ -0.87
CUX1-201ENST00000292535 STK39Q9UEW8 545 aa9.61□□□□□ -0.87
CUX1-201ENST00000292535 DENND5BQ6ZUT9 1274 aa9.61□□□□□ -0.87
CUX1-201ENST00000292535 PACSIN1Q9BY11 444 aa9.61□□□□□ -0.87
CUX1-201ENST00000292535 KPNA6O60684 536 aa9.61□□□□□ -0.87
CUX1-201ENST00000292535 PRR29P0C7W0 189 aa9.61□□□□□ -0.87
CUX1-201ENST00000292535 PRMT9Q6P2P2 845 aa9.61□□□□□ -0.87
CUX1-201ENST00000292535 PEG10Q86TG7 708 aaKnown RBP9.61□□□□□ -0.87
CUX1-201ENST00000292535 FEZF2Q8TBJ5 459 aa9.61□□□□□ -0.87
CUX1-201ENST00000292535 FAM153AQ9UHL3 310 aa9.61□□□□□ -0.87
CUX1-201ENST00000292535 CST8O60676 142 aa9.61□□□□□ -0.87
CUX1-201ENST00000292535 FLT3P36888 993 aa9.61□□□□□ -0.87
CUX1-201ENST00000292535 TRIM25Q14258 630 aaKnown RBP9.61□□□□□ -0.87
CUX1-201ENST00000292535 RASGRP2Q7LDG7 609 aa9.61□□□□□ -0.87
CUX1-201ENST00000292535 GJD4Q96KN9 370 aaPredicted RBP9.61□□□□□ -0.87
CUX1-201ENST00000292535 SMAD5Q99717 465 aaKnown RBP9.61□□□□□ -0.87
CUX1-201ENST00000292535 SLC24A3Q9HC58 644 aa9.61□□□□□ -0.87
CUX1-201ENST00000292535 BAATQ14032 418 aaPredicted RBP9.61□□□□□ -0.87
CUX1-201ENST00000292535 TRIQKQ629K1 86 aa9.61□□□□□ -0.87
CUX1-201ENST00000292535 CEP170Q5SW79 1584 aa9.61□□□□□ -0.87
CUX1-201ENST00000292535 CAPN1P07384 714 aa9.61□□□□□ -0.87
CUX1-201ENST00000292535 DSG3P32926 999 aa9.61□□□□□ -0.87
CUX1-201ENST00000292535 COILP38432 576 aaPredicted RBP9.61□□□□□ -0.87
CUX1-201ENST00000292535 CCDC157Q569K6 752 aa9.61□□□□□ -0.87
CUX1-201ENST00000292535 BHMTQ93088 406 aa9.61□□□□□ -0.87
CUX1-201ENST00000292535 A0A1W2PQJ5 194 aa9.61□□□□□ -0.87
CUX1-201ENST00000292535 MTA2O94776 668 aa9.61□□□□□ -0.87
CUX1-201ENST00000292535 ISCUQ9H1K1 167 aa9.61□□□□□ -0.87
CUX1-201ENST00000292535 ELOVL6Q9H5J4 265 aa9.61□□□□□ -0.87
CUX1-201ENST00000292535 ANKEF1Q9NU02 776 aa9.61□□□□□ -0.87
CUX1-201ENST00000292535 ARHGEF40Q8TER5 1519 aa9.61□□□□□ -0.87
CUX1-201ENST00000292535 NR3C2P08235 984 aa9.6□□□□□ -0.87
CUX1-201ENST00000292535 MAD2L1Q13257 205 aaPredicted RBP9.6□□□□□ -0.87
CUX1-201ENST00000292535 ZNF618Q5T7W0 954 aa9.6□□□□□ -0.87
CUX1-201ENST00000292535 HLA-DQA1Q5Y7H0 255 aa9.6□□□□□ -0.87
CUX1-201ENST00000292535 KRT73Q86Y46 540 aa9.6□□□□□ -0.87
CUX1-201ENST00000292535 DENND6AQ8IWF6 608 aa9.6□□□□□ -0.87
CUX1-201ENST00000292535 EID3Q8N140 333 aa9.6□□□□□ -0.87
CUX1-201ENST00000292535 CAMKK1Q8N5S9 505 aa9.6□□□□□ -0.87
CUX1-201ENST00000292535 RPRD1AQ96P16 312 aaPredicted RBP9.6□□□□□ -0.87
CUX1-201ENST00000292535 DDIT4Q9NX09 232 aa9.6□□□□□ -0.87
CUX1-201ENST00000292535 ANKRD6Q9Y2G4 727 aa9.6□□□□□ -0.87
CUX1-201ENST00000292535 TNS3Q68CZ2 1445 aa9.6□□□□□ -0.87
CUX1-201ENST00000292535 NMT1P30419 496 aaKnown RBP9.6□□□□□ -0.87
CUX1-201ENST00000292535 ZNF614Q8N883 585 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms