RNA–Protein interactions for RNA: ENST00000282516.12

NIPBL-201, Transcript of NIPBL, cohesin loading factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NIPBL, Length 10,435 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-201ENST00000282516 FAM228AQ86W67 206 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 SH3RF3Q8TEJ3 882 aaPredicted RBP8.99□□□□□ -0.97
NIPBL-201ENST00000282516 FAM120BQ96EK7 910 aaKnown RBP8.99□□□□□ -0.97
NIPBL-201ENST00000282516 PUS3Q9BZE2 481 aaKnown RBP8.99□□□□□ -0.97
NIPBL-201ENST00000282516 EPB41L4BQ9H329 900 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 RABGEF1Q9UJ41 708 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 TMA7Q9Y2S6 64 aaKnown RBP8.99□□□□□ -0.97
NIPBL-201ENST00000282516 TCOF1Q13428 1488 aaKnown RBP8.99□□□□□ -0.97
NIPBL-201ENST00000282516 GEMP55040 296 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 GRAPQ13588 217 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 NFYCQ13952 458 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 MTSS1LQ765P7 747 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 CHPFQ8IZ52 775 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.99□□□□□ -0.97
NIPBL-201ENST00000282516 GRAPLQ8TC17 118 aaPredicted RBP8.99□□□□□ -0.97
NIPBL-201ENST00000282516 NMD3Q96D46 503 aaKnown RBP8.99□□□□□ -0.97
NIPBL-201ENST00000282516 DRG1Q9Y295 367 aaKnown RBP8.99□□□□□ -0.97
NIPBL-201ENST00000282516 REREQ9P2R6 1566 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 NPR3P17342 541 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 CASP4P49662 377 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 GOLGA7BQ2TAP0 167 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 BLOC1S5Q8TDH9 187 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 TRPC4APQ8TEL6 797 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 NAT9Q9BTE0 207 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 ANAPC2Q9UJX6 822 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 MYH7P12883 1935 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 RPS6KA5O75582 802 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 BAIAP3O94812 1187 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 S100A1P23297 94 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 SLC11A2P49281 568 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 KPNA1P52294 538 aaPredicted RBP8.99□□□□□ -0.97
NIPBL-201ENST00000282516 GPSM2P81274 684 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 PLIN5Q00G26 463 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 PPIDQ08752 370 aaKnown RBP8.99□□□□□ -0.97
NIPBL-201ENST00000282516 CAMK1Q14012 370 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 SMCO1Q147U7 214 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 PTGES3Q15185 160 aaKnown RBP8.99□□□□□ -0.97
NIPBL-201ENST00000282516 STARD8Q92502 1023 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 PROX1Q92786 737 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 TMEM237Q96Q45 408 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 PNKPQ96T60 521 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 EHD3Q9NZN3 535 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 NAGPAQ9UK23 515 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 PTPRTO14522 1441 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 GRAP2O75791 330 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 PTPN1P18031 435 aaKnown RBP8.99□□□□□ -0.97
NIPBL-201ENST00000282516 ULK3Q6PHR2 472 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 SNX9Q9Y5X1 595 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 IGSF9BQ9UPX0 1349 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 SSU72P8A0A1W2PR75 194 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 LRRC14BA6NHZ5 514 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 CD3EAPO15446 510 aaKnown RBP8.99□□□□□ -0.97
NIPBL-201ENST00000282516 CHP2O43745 196 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 TNFRSF21O75509 655 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 RASA1P20936 1047 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 ZFP1Q6P2D0 407 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 RAET1EQ8TD07 263 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 MS4A14Q96JA4 679 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 SERAC1Q96JX3 654 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.99□□□□□ -0.973e-7■■■■□ 22.6
NIPBL-201ENST00000282516 WHRNQ9P202 907 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 RPS6KL1Q9Y6S9 549 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 ITIH6Q6UXX5 1313 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 KATNA1O75449 491 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 CCDC166P0CW27 439 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 AVPR1AP37288 418 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 RFC5P40937 340 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 PNPLA4P41247 253 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 STARP49675 285 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 ZNF284Q2VY69 593 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 CCDC153Q494R4 210 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 COL23A1Q86Y22 540 aaPredicted RBP8.99□□□□□ -0.97
NIPBL-201ENST00000282516 FAM111AQ96PZ2 611 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 ADPRHL2Q9NX46 363 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 PRKAG3Q9UGI9 489 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 AGAP1Q9UPQ3 857 aa8.99□□□□□ -0.97
NIPBL-201ENST00000282516 RARBP10826 455 aa8.98□□□□□ -0.97
NIPBL-201ENST00000282516 RGS7P49802 495 aa8.98□□□□□ -0.97
NIPBL-201ENST00000282516 ZNF846Q147U1 533 aa8.98□□□□□ -0.97
NIPBL-201ENST00000282516 IER5Q5VY09 327 aa8.98□□□□□ -0.97
NIPBL-201ENST00000282516 TDRD5Q8NAT2 981 aaKnown RBP8.98□□□□□ -0.97
NIPBL-201ENST00000282516 GTF3C2Q8WUA4 911 aaPredicted RBP8.98□□□□□ -0.97
NIPBL-201ENST00000282516 HPS3Q969F9 1004 aa8.98□□□□□ -0.97
NIPBL-201ENST00000282516 RAVER2Q9HCJ3 691 aaKnown RBP8.98□□□□□ -0.97
NIPBL-201ENST00000282516 PALB2Q86YC2 1186 aa8.98□□□□□ -0.97
NIPBL-201ENST00000282516 CENPIQ92674 756 aaPredicted RBP8.98□□□□□ -0.97
NIPBL-201ENST00000282516 MPP4Q96JB8 637 aa8.98□□□□□ -0.97
NIPBL-201ENST00000282516 NCKIPSDQ9NZQ3 722 aa8.98□□□□□ -0.97
NIPBL-201ENST00000282516 ARHGAP28Q9P2N2 729 aa8.98□□□□□ -0.97
NIPBL-201ENST00000282516 LOC100653049A0A140TA62 436 aa8.98□□□□□ -0.97
NIPBL-201ENST00000282516 F8VZ95 297 aa8.98□□□□□ -0.97
NIPBL-201ENST00000282516 OR6B1O95007 311 aa8.98□□□□□ -0.97
NIPBL-201ENST00000282516 HMBSP08397 361 aa8.98□□□□□ -0.97
NIPBL-201ENST00000282516 C21orf59P57076 290 aa8.98□□□□□ -0.97
NIPBL-201ENST00000282516 RALGDSQ12967 914 aa8.98□□□□□ -0.97
NIPBL-201ENST00000282516 CROCCP3Q8IVE0 287 aa8.98□□□□□ -0.97
NIPBL-201ENST00000282516 ATP6V0D2Q8N8Y2 350 aa8.98□□□□□ -0.97
NIPBL-201ENST00000282516 NACC2Q96BF6 587 aa8.98□□□□□ -0.97
NIPBL-201ENST00000282516 RBM12Q9NTZ6 932 aaKnown RBP8.98□□□□□ -0.97
NIPBL-201ENST00000282516 AP3M1Q9Y2T2 418 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms