RNA–Protein interactions for RNA: ENST00000267199.8

VPS33A-201, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS33A, Length 4,586 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-201ENST00000267199 TRIM16LQ309B1 348 aa11.95□□□□□ -0.5
VPS33A-201ENST00000267199 MTHFD1LQ6UB35 978 aa11.95□□□□□ -0.5
VPS33A-201ENST00000267199 BNC2Q6ZN30 1099 aaPredicted RBP11.95□□□□□ -0.5
VPS33A-201ENST00000267199 LPCAT2Q7L5N7 544 aa11.95□□□□□ -0.5
VPS33A-201ENST00000267199 GPR141Q7Z602 305 aa11.95□□□□□ -0.5
VPS33A-201ENST00000267199 PALB2Q86YC2 1186 aa11.95□□□□□ -0.5
VPS33A-201ENST00000267199 TNIP3Q96KP6 325 aa11.95□□□□□ -0.5
VPS33A-201ENST00000267199 SLC12A6Q9UHW9 1150 aa11.95□□□□□ -0.5
VPS33A-201ENST00000267199 SHOC2Q9UQ13 582 aa11.95□□□□□ -0.5
VPS33A-201ENST00000267199 PPME1Q9Y570 386 aa11.95□□□□□ -0.5
VPS33A-201ENST00000267199 PFDN6O15212 129 aa11.95□□□□□ -0.5
VPS33A-201ENST00000267199 DCXO43602 365 aa11.95□□□□□ -0.5
VPS33A-201ENST00000267199 TPP2P29144 1249 aaPredicted RBP11.95□□□□□ -0.5
VPS33A-201ENST00000267199 BNIP1Q12981 228 aa11.95□□□□□ -0.5
VPS33A-201ENST00000267199 ATP1A4Q13733 1029 aa11.95□□□□□ -0.5
VPS33A-201ENST00000267199 PDPK2PQ6A1A2 396 aa11.95□□□□□ -0.5
VPS33A-201ENST00000267199 NIPA1Q7RTP0 329 aa11.95□□□□□ -0.5
VPS33A-201ENST00000267199 RFWD2Q8NHY2 731 aa11.95□□□□□ -0.5
VPS33A-201ENST00000267199 ART4Q93070 314 aa11.95□□□□□ -0.5
VPS33A-201ENST00000267199 BEGAINQ9BUH8 593 aa11.95□□□□□ -0.5
VPS33A-201ENST00000267199 A0A1W2PPM1 405 aa11.94□□□□□ -0.5
VPS33A-201ENST00000267199 ASB14A6NK59 587 aa11.94□□□□□ -0.5
VPS33A-201ENST00000267199 M0R2N6 131 aa11.94□□□□□ -0.5
VPS33A-201ENST00000267199 RALBP11234 206 aa11.94□□□□□ -0.5
VPS33A-201ENST00000267199 SULT1E1P49888 294 aa11.94□□□□□ -0.5
VPS33A-201ENST00000267199 GTF2BQ00403 316 aa11.94□□□□□ -0.5
VPS33A-201ENST00000267199 ITGA9Q13797 1035 aa11.94□□□□□ -0.5
VPS33A-201ENST00000267199 CAPRIN1Q14444 709 aaKnown RBP11.94□□□□□ -0.5
VPS33A-201ENST00000267199 GOLGA7BQ2TAP0 167 aa11.94□□□□□ -0.5
VPS33A-201ENST00000267199 OTOAQ7RTW8 1153 aa11.94□□□□□ -0.5
VPS33A-201ENST00000267199 FAM83AQ86UY5 434 aa11.94□□□□□ -0.5
VPS33A-201ENST00000267199 SCN4BQ8IWT1 228 aa11.94□□□□□ -0.5
VPS33A-201ENST00000267199 DDI1Q8WTU0 396 aa11.94□□□□□ -0.5
VPS33A-201ENST00000267199 ZNF560Q96MR9 790 aa11.94□□□□□ -0.5
VPS33A-201ENST00000267199 UNKQ9C0B0 810 aaKnown RBP11.94□□□□□ -0.5
VPS33A-201ENST00000267199 PCDH9Q9HC56 1237 aa11.94□□□□□ -0.5
VPS33A-201ENST00000267199 SARS2Q9NP81 518 aaKnown RBP11.94□□□□□ -0.5
VPS33A-201ENST00000267199 BTBD7Q9P203 1132 aa11.94□□□□□ -0.5
VPS33A-201ENST00000267199 CPSF3Q9UKF6 684 aaKnown RBP11.94□□□□□ -0.5
VPS33A-201ENST00000267199 MYH10P35580 1976 aa11.94□□□□□ -0.5
VPS33A-201ENST00000267199 HBP1O60381 514 aa11.94□□□□□ -0.5
VPS33A-201ENST00000267199 ZMPSTE24O75844 475 aa11.94□□□□□ -0.5
VPS33A-201ENST00000267199 MAPK10P53779 464 aa11.94□□□□□ -0.5
VPS33A-201ENST00000267199 BLMHQ13867 455 aa11.94□□□□□ -0.5
VPS33A-201ENST00000267199 ACAP1Q15027 740 aa11.94□□□□□ -0.5
VPS33A-201ENST00000267199 PDK4Q16654 411 aa11.94□□□□□ -0.5
VPS33A-201ENST00000267199 CRY2Q49AN0 593 aa11.94□□□□□ -0.5
VPS33A-201ENST00000267199 C6orf10Q5SRN2 563 aa11.94□□□□□ -0.5
VPS33A-201ENST00000267199 ITPRIPL1Q6GPH6 555 aa11.94□□□□□ -0.5
VPS33A-201ENST00000267199 ZBTB46Q86UZ6 589 aa11.94□□□□□ -0.5
VPS33A-201ENST00000267199 CATSPER2Q96P56 530 aa11.94□□□□□ -0.5
VPS33A-201ENST00000267199 TRAPPC9Q96Q05 1148 aa11.94□□□□□ -0.5
VPS33A-201ENST00000267199 ZNF518BQ9C0D4 1074 aa11.94□□□□□ -0.5
VPS33A-201ENST00000267199 PAIP1Q9H074 479 aaKnown RBP11.94□□□□□ -0.5
VPS33A-201ENST00000267199 ILKAPQ9H0C8 392 aaPredicted RBP11.94□□□□□ -0.5
VPS33A-201ENST00000267199 PIN4Q9Y237 131 aaKnown RBP11.94□□□□□ -0.5
VPS33A-201ENST00000267199 RGPD2P0DJD1 1756 aa11.94□□□□□ -0.5
VPS33A-201ENST00000267199 F8VP50 259 aa11.94□□□□□ -0.5
VPS33A-201ENST00000267199 USP1O94782 785 aa11.94□□□□□ -0.5
VPS33A-201ENST00000267199 MOCS2O96007 188 aaPredicted RBP11.94□□□□□ -0.5
VPS33A-201ENST00000267199 MYL3P08590 195 aa11.94□□□□□ -0.5
VPS33A-201ENST00000267199 RARBP10826 455 aa11.94□□□□□ -0.5
VPS33A-201ENST00000267199 ADARP55265 1226 aaKnown RBP11.94□□□□□ -0.5
VPS33A-201ENST00000267199 PLEKHA7Q6IQ23 1121 aa11.94□□□□□ -0.5
VPS33A-201ENST00000267199 FAM192AQ9GZU8 254 aa11.94□□□□□ -0.5
VPS33A-201ENST00000267199 C12orf65Q9H3J6 166 aaKnown RBP11.94□□□□□ -0.5
VPS33A-201ENST00000267199 SCHIP1Q9P0W5 487 aaPredicted RBP11.94□□□□□ -0.5
VPS33A-201ENST00000267199 KDM3BQ7LBC6 1761 aa11.94□□□□□ -0.5
VPS33A-201ENST00000267199 POLBP06746 335 aa11.94□□□□□ -0.5
VPS33A-201ENST00000267199 TPI1P60174 286 aa11.94□□□□□ -0.5
VPS33A-201ENST00000267199 KYAT1Q16773 422 aa11.94□□□□□ -0.5
VPS33A-201ENST00000267199 C16orf46Q6P387 395 aa11.94□□□□□ -0.5
VPS33A-201ENST00000267199 DENND5BQ6ZUT9 1274 aa11.94□□□□□ -0.5
VPS33A-201ENST00000267199 ZCCHC9Q8N567 271 aaKnown RBP11.94□□□□□ -0.5
VPS33A-201ENST00000267199 MAGEC3Q8TD91 643 aa11.94□□□□□ -0.5
VPS33A-201ENST00000267199 APOPT1Q96IL0 206 aa11.94□□□□□ -0.5
VPS33A-201ENST00000267199 VCPIP1Q96JH7 1222 aa11.94□□□□□ -0.5
VPS33A-201ENST00000267199 DACH2Q96NX9 599 aa11.94□□□□□ -0.5
VPS33A-201ENST00000267199 C2orf71A6NGG8 1288 aa11.93□□□□□ -0.5
VPS33A-201ENST00000267199 MAGEB2O15479 319 aa11.93□□□□□ -0.5
VPS33A-201ENST00000267199 GLRA3O75311 464 aa11.93□□□□□ -0.5
VPS33A-201ENST00000267199 SRP72O76094 671 aaKnown RBP11.93□□□□□ -0.5
VPS33A-201ENST00000267199 FAM58BPP0C7Q3 252 aa11.93□□□□□ -0.5
VPS33A-201ENST00000267199 THRAP10827 490 aa11.93□□□□□ -0.5
VPS33A-201ENST00000267199 SERPINB8P50452 374 aa11.93□□□□□ -0.5
VPS33A-201ENST00000267199 NME5P56597 212 aa11.93□□□□□ -0.5
VPS33A-201ENST00000267199 KBTBD12Q3ZCT8 623 aa11.93□□□□□ -0.5
VPS33A-201ENST00000267199 DCAF6Q58WW2 860 aa11.93□□□□□ -0.5
VPS33A-201ENST00000267199 ANGPTL8Q6UXH0 198 aa11.93□□□□□ -0.5
VPS33A-201ENST00000267199 RIPOR1Q6ZS17 1223 aa11.93□□□□□ -0.5
VPS33A-201ENST00000267199 SLC51AQ86UW1 340 aa11.93□□□□□ -0.5
VPS33A-201ENST00000267199 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.93□□□□□ -0.5
VPS33A-201ENST00000267199 LRRC57Q8N9N7 239 aa11.93□□□□□ -0.5
VPS33A-201ENST00000267199 TMEM161BQ8NDZ6 487 aa11.93□□□□□ -0.5
VPS33A-201ENST00000267199 ERAP1Q9NZ08 941 aa11.93□□□□□ -0.5
VPS33A-201ENST00000267199 USP18Q9UMW8 372 aa11.93□□□□□ -0.5
VPS33A-201ENST00000267199 DAB1O75553 588 aa11.93□□□□□ -0.5
VPS33A-201ENST00000267199 LSM8O95777 96 aaKnown RBP11.93□□□□□ -0.5
VPS33A-201ENST00000267199 GFAPP14136 432 aa11.93□□□□□ -0.5
VPS33A-201ENST00000267199 AVPR1AP37288 418 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms