RNA–Protein interactions for RNA: ENST00000254667.7

PTPRE-201, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRE, Length 5,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-201ENST00000254667 ICE2Q659A1 982 aa19.59■□□□□ 0.73
PTPRE-201ENST00000254667 PRPF39Q86UA1 669 aaKnown RBP19.59■□□□□ 0.73
PTPRE-201ENST00000254667 DNAJB3Q8WWF6 145 aa19.59■□□□□ 0.73
PTPRE-201ENST00000254667 PCDH9Q9HC56 1237 aa19.59■□□□□ 0.73
PTPRE-201ENST00000254667 FER1L4A9Z1Z3 1794 aa19.59■□□□□ 0.73
PTPRE-201ENST00000254667 MAGEB16A2A368 324 aa19.59■□□□□ 0.73
PTPRE-201ENST00000254667 ERVK-9P63128 1117 aa19.59■□□□□ 0.73
PTPRE-201ENST00000254667 PAN2Q504Q3 1202 aaKnown RBP19.59■□□□□ 0.73
PTPRE-201ENST00000254667 EARS2Q5JPH6 523 aaKnown RBP19.59■□□□□ 0.73
PTPRE-201ENST00000254667 ERMARDQ5T6L9 678 aa19.59■□□□□ 0.73
PTPRE-201ENST00000254667 OOSP2Q86WS3 158 aa19.59■□□□□ 0.73
PTPRE-201ENST00000254667 THTPAQ9BU02 230 aa19.59■□□□□ 0.73
PTPRE-201ENST00000254667 MRPL9Q9BYD2 267 aaKnown RBP19.59■□□□□ 0.73
PTPRE-201ENST00000254667 CCDC134Q9H6E4 229 aa19.59■□□□□ 0.73
PTPRE-201ENST00000254667 TSPAN16Q9UKR8 245 aa19.59■□□□□ 0.73
PTPRE-201ENST00000254667 PCDHB12Q9Y5F1 795 aa19.59■□□□□ 0.73
PTPRE-201ENST00000254667 SKOR1P84550 965 aa19.59■□□□□ 0.73
PTPRE-201ENST00000254667 CEP70Q8NHQ1 597 aa19.59■□□□□ 0.73
PTPRE-201ENST00000254667 TATDN2Q93075 761 aa19.59■□□□□ 0.73
PTPRE-201ENST00000254667 SLC35C1Q96A29 364 aa19.59■□□□□ 0.73
PTPRE-201ENST00000254667 FAM111AQ96PZ2 611 aa19.59■□□□□ 0.73
PTPRE-201ENST00000254667 ADGRE3Q9BY15 652 aa19.59■□□□□ 0.73
PTPRE-201ENST00000254667 PLD1Q13393 1074 aa19.59■□□□□ 0.73
PTPRE-201ENST00000254667 LRRC8BQ6P9F7 803 aa19.59■□□□□ 0.73
PTPRE-201ENST00000254667 NLRP9Q7RTR0 991 aa19.59■□□□□ 0.73
PTPRE-201ENST00000254667 SLC26A11Q86WA9 606 aa19.59■□□□□ 0.73
PTPRE-201ENST00000254667 EIF3LQ9Y262 564 aaKnown RBP19.59■□□□□ 0.73
PTPRE-201ENST00000254667 E2F8A0AVK6 867 aa19.58■□□□□ 0.73
PTPRE-201ENST00000254667 NDST1P52848 882 aa19.58■□□□□ 0.73
PTPRE-201ENST00000254667 PPIL2Q13356 520 aa19.58■□□□□ 0.73
PTPRE-201ENST00000254667 ARID3BQ8IVW6 561 aaPredicted RBP19.58■□□□□ 0.73
PTPRE-201ENST00000254667 CARNMT1Q8N4J0 409 aa19.58■□□□□ 0.73
PTPRE-201ENST00000254667 KCTD10Q9H3F6 313 aa19.58■□□□□ 0.73
PTPRE-201ENST00000254667 SYTL2Q9HCH5 934 aa19.58■□□□□ 0.73
PTPRE-201ENST00000254667 A1CFQ9NQ94 594 aaKnown RBP19.58■□□□□ 0.73
PTPRE-201ENST00000254667 CDV3Q9UKY7 258 aaKnown RBP19.58■□□□□ 0.73
PTPRE-201ENST00000254667 TTLL13PA6NNM8 815 aa19.58■□□□□ 0.73
PTPRE-201ENST00000254667 PTPRAP18433 802 aa19.58■□□□□ 0.73
PTPRE-201ENST00000254667 PSEN2P49810 448 aa19.58■□□□□ 0.73
PTPRE-201ENST00000254667 PMS1P54277 932 aaKnown RBP19.58■□□□□ 0.73
PTPRE-201ENST00000254667 SOX10P56693 466 aa19.58■□□□□ 0.73
PTPRE-201ENST00000254667 TMED1Q13445 227 aa19.58■□□□□ 0.73
PTPRE-201ENST00000254667 RIOX2Q8IUF8 465 aa19.58■□□□□ 0.73
PTPRE-201ENST00000254667 FAM162AQ96A26 154 aa19.58■□□□□ 0.73
PTPRE-201ENST00000254667 EME1Q96AY2 570 aa19.58■□□□□ 0.73
PTPRE-201ENST00000254667 WNK4Q96J92 1243 aa19.58■□□□□ 0.73
PTPRE-201ENST00000254667 AVENQ9NQS1 362 aaPredicted RBP19.58■□□□□ 0.73
PTPRE-201ENST00000254667 RNF112Q9ULX5 631 aa19.58■□□□□ 0.73
PTPRE-201ENST00000254667 IPPQ9Y573 584 aa19.58■□□□□ 0.73
PTPRE-201ENST00000254667 RNASEH1O60930 286 aaKnown RBP19.58■□□□□ 0.72
PTPRE-201ENST00000254667 SLC12A3P55017 1021 aa19.58■□□□□ 0.72
PTPRE-201ENST00000254667 ABTB1Q969K4 478 aaPredicted RBP19.58■□□□□ 0.72
PTPRE-201ENST00000254667 TMEM134Q9H6X4 195 aa19.58■□□□□ 0.72
PTPRE-201ENST00000254667 ZKSCAN7Q9P0L1 754 aaPredicted RBP19.58■□□□□ 0.72
PTPRE-201ENST00000254667 VPS28Q9UK41 221 aa19.58■□□□□ 0.72
PTPRE-201ENST00000254667 CASTOR2A6NHX0 329 aa19.58■□□□□ 0.72
PTPRE-201ENST00000254667 FKBP9O95302 570 aa19.58■□□□□ 0.72
PTPRE-201ENST00000254667 ARIH2O95376 493 aa19.58■□□□□ 0.72
PTPRE-201ENST00000254667 CYP2F1P24903 491 aa19.58■□□□□ 0.72
PTPRE-201ENST00000254667 FKBP9P1Q75LS8 142 aa19.58■□□□□ 0.72
PTPRE-201ENST00000254667 SRLQ86TD4 932 aa19.58■□□□□ 0.72
PTPRE-201ENST00000254667 SMARCD1Q96GM5 515 aa19.58■□□□□ 0.72
PTPRE-201ENST00000254667 MTMR9Q96QG7 549 aa19.58■□□□□ 0.72
PTPRE-201ENST00000254667 NR1H4Q96RI1 486 aaPredicted RBP19.58■□□□□ 0.72
PTPRE-201ENST00000254667 TMEM161AQ9NX61 479 aa19.58■□□□□ 0.72
PTPRE-201ENST00000254667 CARNS1A5YM72 827 aa19.57■□□□□ 0.72
PTPRE-201ENST00000254667 RBP1P09455 135 aa19.57■□□□□ 0.72
PTPRE-201ENST00000254667 RENBPP51606 427 aa19.57■□□□□ 0.72
PTPRE-201ENST00000254667 RHOAP61586 193 aa19.57■□□□□ 0.72
PTPRE-201ENST00000254667 ACVR2BQ13705 512 aa19.57■□□□□ 0.72
PTPRE-201ENST00000254667 ACAP1Q15027 740 aa19.57■□□□□ 0.72
PTPRE-201ENST00000254667 CACHD1Q5VU97 1274 aa19.57■□□□□ 0.72
PTPRE-201ENST00000254667 MAP1SQ66K74 1059 aaPredicted RBP19.57■□□□□ 0.72
PTPRE-201ENST00000254667 EMC1Q8N766 993 aa19.57■□□□□ 0.72
PTPRE-201ENST00000254667 SERBP1Q8NC51 408 aaKnown RBP eCLIP19.57■□□□□ 0.72
PTPRE-201ENST00000254667 BLOC1S4Q9NUP1 217 aa19.57■□□□□ 0.72
PTPRE-201ENST00000254667 ZNF135P52742 658 aaPredicted RBP19.57■□□□□ 0.72
PTPRE-201ENST00000254667 ZNF284Q2VY69 593 aa19.57■□□□□ 0.72
PTPRE-201ENST00000254667 C16orf87Q6PH81 154 aa19.57■□□□□ 0.72
PTPRE-201ENST00000254667 IFNEQ86WN2 208 aa19.57■□□□□ 0.72
PTPRE-201ENST00000254667 CLEC4FQ8N1N0 589 aa19.57■□□□□ 0.72
PTPRE-201ENST00000254667 DDI1Q8WTU0 396 aa19.57■□□□□ 0.72
PTPRE-201ENST00000254667 MAGEB18Q96M61 343 aa19.57■□□□□ 0.72
PTPRE-201ENST00000254667 C17orf80Q9BSJ5 609 aa19.57■□□□□ 0.72
PTPRE-201ENST00000254667 SUFUQ9UMX1 484 aa19.57■□□□□ 0.72
PTPRE-201ENST00000254667 SHOC2Q9UQ13 582 aa19.57■□□□□ 0.72
PTPRE-201ENST00000254667 TRPV2Q9Y5S1 764 aa19.57■□□□□ 0.72
PTPRE-201ENST00000254667 TBC1D4O60343 1298 aa19.57■□□□□ 0.72
PTPRE-201ENST00000254667 AVPR1AP37288 418 aa19.57■□□□□ 0.72
PTPRE-201ENST00000254667 PTENP60484 403 aa19.57■□□□□ 0.72
PTPRE-201ENST00000254667 LRRC74AQ0VAA2 488 aa19.57■□□□□ 0.72
PTPRE-201ENST00000254667 MYO1HQ8N1T3 1032 aa19.57■□□□□ 0.72
PTPRE-201ENST00000254667 PNKPQ96T60 521 aa19.57■□□□□ 0.72
PTPRE-201ENST00000254667 JCHAINP01591 159 aa19.57■□□□□ 0.72
PTPRE-201ENST00000254667 CCND1P24385 295 aa19.57■□□□□ 0.72
PTPRE-201ENST00000254667 COPAP53621 1224 aa19.57■□□□□ 0.72
PTPRE-201ENST00000254667 HPCAP84074 193 aa19.57■□□□□ 0.72
PTPRE-201ENST00000254667 LZTR1Q8N653 840 aa19.57■□□□□ 0.72
PTPRE-201ENST00000254667 CLPBQ9H078 707 aa19.57■□□□□ 0.72
PTPRE-201ENST00000254667 UMODL1Q5DID0 1318 aa19.57■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms