RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 A0A1W2PQ67 120 aa14.17□□□□□ -0.14
LDLR-201ENST00000252444 NCK2O43639 380 aa14.17□□□□□ -0.14
LDLR-201ENST00000252444 ADRB2P07550 413 aa14.17□□□□□ -0.14
LDLR-201ENST00000252444 MAPK7Q13164 816 aa14.17□□□□□ -0.14
LDLR-201ENST00000252444 ACAD11Q709F0 780 aa14.17□□□□□ -0.14
LDLR-201ENST00000252444 ARHGEF19Q8IW93 802 aa14.17□□□□□ -0.14
LDLR-201ENST00000252444 COG1Q8WTW3 980 aa14.17□□□□□ -0.14
LDLR-201ENST00000252444 PDZD7Q9H5P4 517 aa14.17□□□□□ -0.14
LDLR-201ENST00000252444 XPO7Q9UIA9 1087 aaKnown RBP14.17□□□□□ -0.14
LDLR-201ENST00000252444 TMCO1Q9UM00 188 aa14.17□□□□□ -0.14
LDLR-201ENST00000252444 RBAK-RBAKDNI3L0D1 243 aa14.17□□□□□ -0.14
LDLR-201ENST00000252444 PGK1P00558 417 aa14.17□□□□□ -0.14
LDLR-201ENST00000252444 CKBP12277 381 aa14.17□□□□□ -0.14
LDLR-201ENST00000252444 ACCSLQ4AC99 568 aa14.17□□□□□ -0.14
LDLR-201ENST00000252444 MIIPQ5JXC2 388 aa14.17□□□□□ -0.14
LDLR-201ENST00000252444 WDR93Q6P2C0 686 aa14.17□□□□□ -0.14
LDLR-201ENST00000252444 FNIP1Q8TF40 1166 aa14.17□□□□□ -0.14
LDLR-201ENST00000252444 ARHGAP39Q9C0H5 1083 aa14.17□□□□□ -0.14
LDLR-201ENST00000252444 RNPEPQ9H4A4 650 aa14.17□□□□□ -0.14
LDLR-201ENST00000252444 TMEM161AQ9NX61 479 aa14.17□□□□□ -0.14
LDLR-201ENST00000252444 GRIN2DO15399 1336 aa14.16□□□□□ -0.14
LDLR-201ENST00000252444 KRT16P08779 473 aa14.16□□□□□ -0.14
LDLR-201ENST00000252444 TRIP13Q15645 432 aaPredicted RBP14.16□□□□□ -0.14
LDLR-201ENST00000252444 CNKSR3Q6P9H4 555 aa14.16□□□□□ -0.14
LDLR-201ENST00000252444 WNT8BQ93098 351 aa14.16□□□□□ -0.14
LDLR-201ENST00000252444 RPRD1AQ96P16 312 aaPredicted RBP14.16□□□□□ -0.14
LDLR-201ENST00000252444 DMAC2Q9NW81 257 aa14.16□□□□□ -0.14
LDLR-201ENST00000252444 STK38LQ9Y2H1 464 aa14.16□□□□□ -0.14
LDLR-201ENST00000252444 TGFB1I1O43294 461 aa14.16□□□□□ -0.14
LDLR-201ENST00000252444 ARF4P18085 180 aaPredicted RBP14.16□□□□□ -0.14
LDLR-201ENST00000252444 NPY2RP49146 381 aa14.16□□□□□ -0.14
LDLR-201ENST00000252444 KLK7P49862 253 aa14.16□□□□□ -0.14
LDLR-201ENST00000252444 ZNF143P52747 638 aaPredicted RBP14.16□□□□□ -0.14
LDLR-201ENST00000252444 ATN1P54259 1190 aaPredicted RBP14.16□□□□□ -0.14
LDLR-201ENST00000252444 ZBED8Q8IZ13 594 aa14.16□□□□□ -0.14
LDLR-201ENST00000252444 CYP4F11Q9HBI6 524 aa14.16□□□□□ -0.14
LDLR-201ENST00000252444 PIK3R2O00459 728 aa14.16□□□□□ -0.14
LDLR-201ENST00000252444 GLUD2P49448 558 aa14.16□□□□□ -0.14
LDLR-201ENST00000252444 PRKAA2P54646 552 aa14.16□□□□□ -0.14
LDLR-201ENST00000252444 DEFB128Q7Z7B8 93 aa14.16□□□□□ -0.14
LDLR-201ENST00000252444 SLC47A2Q86VL8 602 aa14.16□□□□□ -0.14
LDLR-201ENST00000252444 B3GALNT2Q8NCR0 500 aa14.16□□□□□ -0.14
LDLR-201ENST00000252444 PIK3R5Q8WYR1 880 aa14.16□□□□□ -0.14
LDLR-201ENST00000252444 GAD1Q99259 594 aa14.16□□□□□ -0.14
LDLR-201ENST00000252444 DNAJC17Q9NVM6 304 aaKnown RBP14.16□□□□□ -0.14
LDLR-201ENST00000252444 DNMT3LQ9UJW3 386 aa14.16□□□□□ -0.14
LDLR-201ENST00000252444 NEU2Q9Y3R4 380 aa14.16□□□□□ -0.14
LDLR-201ENST00000252444 ASB3Q9Y575 518 aa14.16□□□□□ -0.14
LDLR-201ENST00000252444 PCDHGC5Q9Y5F6 944 aa14.16□□□□□ -0.14
LDLR-201ENST00000252444 MYO1DO94832 1006 aa14.16□□□□□ -0.14
LDLR-201ENST00000252444 PDCLQ13371 301 aa14.16□□□□□ -0.14
LDLR-201ENST00000252444 MRNIPQ6NTE8 343 aa14.16□□□□□ -0.14
LDLR-201ENST00000252444 KIAA0319LQ8IZA0 1049 aa14.16□□□□□ -0.14
LDLR-201ENST00000252444 C1orf54Q8WWF1 131 aa14.16□□□□□ -0.14
LDLR-201ENST00000252444 FUBP3Q96I24 572 aaKnown RBP eCLIP14.16□□□□□ -0.141e-7■■■■□ 24.9
LDLR-201ENST00000252444 ATP6V1G3Q96LB4 118 aa14.16□□□□□ -0.14
LDLR-201ENST00000252444 TRIM55Q9BYV6 548 aa14.16□□□□□ -0.14
LDLR-201ENST00000252444 SLC12A8A0AV02 714 aa14.15□□□□□ -0.14
LDLR-201ENST00000252444 DNM1LO00429 736 aa14.15□□□□□ -0.14
LDLR-201ENST00000252444 DDX53Q86TM3 631 aaKnown RBP14.15□□□□□ -0.14
LDLR-201ENST00000252444 EPS8L1Q8TE68 723 aa14.15□□□□□ -0.14
LDLR-201ENST00000252444 OSCP1Q8WVF1 389 aa14.15□□□□□ -0.14
LDLR-201ENST00000252444 EPS15L1Q9UBC2 864 aa14.15□□□□□ -0.14
LDLR-201ENST00000252444 ZC3H7BQ9UGR2 993 aaKnown RBP14.15□□□□□ -0.14
LDLR-201ENST00000252444 SLC4A7Q9Y6M7 1214 aa14.15□□□□□ -0.14
LDLR-201ENST00000252444 RASA4BC9J798 803 aa14.15□□□□□ -0.14
LDLR-201ENST00000252444 RASA4O43374 803 aa14.15□□□□□ -0.14
LDLR-201ENST00000252444 F2P00734 622 aa14.15□□□□□ -0.14
LDLR-201ENST00000252444 POMCP01189 267 aa14.15□□□□□ -0.14
LDLR-201ENST00000252444 MLH1P40692 756 aa14.15□□□□□ -0.14
LDLR-201ENST00000252444 MTF1Q14872 753 aa14.15□□□□□ -0.14
LDLR-201ENST00000252444 PTPN21Q16825 1174 aa14.15□□□□□ -0.14
LDLR-201ENST00000252444 SCARA3Q6AZY7 606 aa14.15□□□□□ -0.14
LDLR-201ENST00000252444 GJB7Q6PEY0 223 aa14.15□□□□□ -0.14
LDLR-201ENST00000252444 FAM9CQ8IZT9 166 aa14.15□□□□□ -0.14
LDLR-201ENST00000252444 NUP93Q8N1F7 819 aa14.15□□□□□ -0.14
LDLR-201ENST00000252444 TATDN2Q93075 761 aa14.15□□□□□ -0.14
LDLR-201ENST00000252444 SERPINB12Q96P63 405 aa14.15□□□□□ -0.14
LDLR-201ENST00000252444 DUSP16Q9BY84 665 aa14.15□□□□□ -0.14
LDLR-201ENST00000252444 RBM47A0AV96 593 aaKnown RBP14.15□□□□□ -0.14
LDLR-201ENST00000252444 CYP2A6P11509 494 aaPredicted RBP14.15□□□□□ -0.14
LDLR-201ENST00000252444 CHKAP35790 457 aa14.15□□□□□ -0.14
LDLR-201ENST00000252444 SCNN1GP51170 649 aa14.15□□□□□ -0.14
LDLR-201ENST00000252444 PPP2R2AP63151 447 aa14.15□□□□□ -0.14
LDLR-201ENST00000252444 HSDL1Q3SXM5 330 aa14.15□□□□□ -0.14
LDLR-201ENST00000252444 INTS6LQ5JSJ4 861 aaKnown RBP14.15□□□□□ -0.14
LDLR-201ENST00000252444 SLC20A1Q8WUM9 679 aa14.15□□□□□ -0.14
LDLR-201ENST00000252444 DEFB118Q96PH6 123 aa14.15□□□□□ -0.14
LDLR-201ENST00000252444 RAB6BQ9NRW1 208 aa14.15□□□□□ -0.14
LDLR-201ENST00000252444 TIMM44O43615 452 aa14.15□□□□□ -0.14
LDLR-201ENST00000252444 FGBP02675 491 aa14.15□□□□□ -0.14
LDLR-201ENST00000252444 VCLP18206 1134 aa14.15□□□□□ -0.14
LDLR-201ENST00000252444 ACLYP53396 1101 aa14.15□□□□□ -0.14
LDLR-201ENST00000252444 HECTD3Q5T447 861 aa14.15□□□□□ -0.14
LDLR-201ENST00000252444 PHLDB3Q6NSJ2 640 aa14.15□□□□□ -0.14
LDLR-201ENST00000252444 CES5AQ6NT32 575 aa14.15□□□□□ -0.14
LDLR-201ENST00000252444 ACBD6Q9BR61 282 aa14.15□□□□□ -0.14
LDLR-201ENST00000252444 ZNF670Q9BS34 389 aa14.15□□□□□ -0.14
LDLR-201ENST00000252444 TTPALQ9BTX7 342 aa14.15□□□□□ -0.14
LDLR-201ENST00000252444 ARHGEF38Q9NXL2 777 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms