RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 APBA2Q99767 749 aa13.2□□□□□ -0.3
USP40-201ENST00000251722 KIF17Q9P2E2 1029 aa13.2□□□□□ -0.3
USP40-201ENST00000251722 ARL2BPQ9Y2Y0 163 aa13.2□□□□□ -0.3
USP40-201ENST00000251722 ACKR2O00590 384 aa13.2□□□□□ -0.3
USP40-201ENST00000251722 ANGPT2O15123 496 aa13.2□□□□□ -0.3
USP40-201ENST00000251722 FGF19O95750 216 aa13.2□□□□□ -0.3
USP40-201ENST00000251722 GNRH1P01148 92 aa13.2□□□□□ -0.3
USP40-201ENST00000251722 SNRPAP09012 282 aaKnown RBP13.2□□□□□ -0.3
USP40-201ENST00000251722 PAEPP09466 180 aa13.2□□□□□ -0.3
USP40-201ENST00000251722 GHRP10912 638 aa13.2□□□□□ -0.3
USP40-201ENST00000251722 FDPSP14324 419 aaKnown RBP13.2□□□□□ -0.3
USP40-201ENST00000251722 GIT2Q14161 759 aa13.2□□□□□ -0.3
USP40-201ENST00000251722 RGMBQ6NW40 437 aa13.2□□□□□ -0.3
USP40-201ENST00000251722 C1orf131Q8NDD1 294 aaKnown RBP13.2□□□□□ -0.3
USP40-201ENST00000251722 QKIQ96PU8 341 aaKnown RBP eCLIP13.2□□□□□ -0.33e-9■■■■■ 37
USP40-201ENST00000251722 CNPY3Q9BT09 278 aa13.2□□□□□ -0.3
USP40-201ENST00000251722 C1QTNF7Q9BXJ2 289 aa13.2□□□□□ -0.3
USP40-201ENST00000251722 ARHGAP26Q9UNA1 814 aa13.2□□□□□ -0.3
USP40-201ENST00000251722 COMMD3-BMI1R4GMX3 469 aa13.2□□□□□ -0.3
USP40-201ENST00000251722 M0QYT0 321 aa13.19□□□□□ -0.3
USP40-201ENST00000251722 CKMP06732 381 aa13.19□□□□□ -0.3
USP40-201ENST00000251722 APRTP07741 180 aa13.19□□□□□ -0.3
USP40-201ENST00000251722 MYL2P10916 166 aa13.19□□□□□ -0.3
USP40-201ENST00000251722 ITGALP20701 1170 aa13.19□□□□□ -0.3
USP40-201ENST00000251722 CLCN3P51790 818 aa13.19□□□□□ -0.3
USP40-201ENST00000251722 CATSPERGQ6ZRH7 1159 aa13.19□□□□□ -0.3
USP40-201ENST00000251722 TMEM176AQ96HP8 235 aa13.19□□□□□ -0.3
USP40-201ENST00000251722 VCPIP1Q96JH7 1222 aa13.19□□□□□ -0.3
USP40-201ENST00000251722 CHAMP1Q96JM3 812 aa13.19□□□□□ -0.3
USP40-201ENST00000251722 ZCCHC2Q9C0B9 1178 aaKnown RBP13.19□□□□□ -0.3
USP40-201ENST00000251722 POLD4Q9HCU8 107 aa13.19□□□□□ -0.3
USP40-201ENST00000251722 GRID1Q9ULK0 1009 aa13.19□□□□□ -0.3
USP40-201ENST00000251722 RSPH10B2B2RC85 870 aa13.19□□□□□ -0.3
USP40-201ENST00000251722 SLC37A4O43826 429 aa13.19□□□□□ -0.3
USP40-201ENST00000251722 WEE2P0C1S8 567 aa13.19□□□□□ -0.3
USP40-201ENST00000251722 RSPH10BP0C881 870 aa13.19□□□□□ -0.3
USP40-201ENST00000251722 ARP10275 920 aa13.19□□□□□ -0.3
USP40-201ENST00000251722 EPHB2P29323 1055 aa13.19□□□□□ -0.3
USP40-201ENST00000251722 FCHO2Q0JRZ9 810 aa13.19□□□□□ -0.3
USP40-201ENST00000251722 TSC22D1Q15714 1073 aa13.19□□□□□ -0.3
USP40-201ENST00000251722 C1orf146Q5VVC0 180 aa13.19□□□□□ -0.3
USP40-201ENST00000251722 IRGCQ6NXR0 463 aa13.19□□□□□ -0.3
USP40-201ENST00000251722 ZNF720Q7Z2F6 126 aa13.19□□□□□ -0.3
USP40-201ENST00000251722 TMC7Q7Z402 723 aa13.19□□□□□ -0.3
USP40-201ENST00000251722 SLFN11Q7Z7L1 901 aa13.19□□□□□ -0.3
USP40-201ENST00000251722 PCYOX1LQ8NBM8 494 aa13.19□□□□□ -0.3
USP40-201ENST00000251722 KBTBD4Q9NVX7 518 aa13.19□□□□□ -0.3
USP40-201ENST00000251722 NEU2Q9Y3R4 380 aa13.19□□□□□ -0.3
USP40-201ENST00000251722 PGK2P07205 417 aa13.19□□□□□ -0.3
USP40-201ENST00000251722 PSMA3P25788 255 aa13.19□□□□□ -0.3
USP40-201ENST00000251722 GRIN1Q05586 938 aa13.19□□□□□ -0.3
USP40-201ENST00000251722 DEFB115Q30KQ5 88 aa13.19□□□□□ -0.3
USP40-201ENST00000251722 METTL3Q86U44 580 aaKnown RBP13.19□□□□□ -0.3
USP40-201ENST00000251722 RABL2AQ9UBK7 228 aaPredicted RBP13.19□□□□□ -0.3
USP40-201ENST00000251722 C3P01024 1663 aa13.19□□□□□ -0.3
USP40-201ENST00000251722 TCRBV5S4A2TA0A5A2 114 aa13.19□□□□□ -0.3
USP40-201ENST00000251722 CKBP12277 381 aa13.19□□□□□ -0.3
USP40-201ENST00000251722 KCNA1Q09470 495 aa13.19□□□□□ -0.3
USP40-201ENST00000251722 BTG3Q14201 252 aaPredicted RBP13.19□□□□□ -0.3
USP40-201ENST00000251722 ACAP1Q15027 740 aa13.19□□□□□ -0.3
USP40-201ENST00000251722 AGBL2Q5U5Z8 902 aa13.19□□□□□ -0.3
USP40-201ENST00000251722 USP38Q8NB14 1042 aa13.19□□□□□ -0.3
USP40-201ENST00000251722 SMARCD1Q96GM5 515 aa13.19□□□□□ -0.3
USP40-201ENST00000251722 SERPINB11Q96P15 392 aa13.19□□□□□ -0.3
USP40-201ENST00000251722 RBM15Q96T37 977 aaKnown RBP eCLIP13.19□□□□□ -0.3
USP40-201ENST00000251722 SCUBE2Q9NQ36 999 aa13.19□□□□□ -0.3
USP40-201ENST00000251722 BARX2Q9UMQ3 279 aaPredicted RBP13.19□□□□□ -0.3
USP40-201ENST00000251722 SNX5Q9Y5X3 404 aa13.19□□□□□ -0.3
USP40-201ENST00000251722 TMEM191CA6NGB0 347 aa13.19□□□□□ -0.3
USP40-201ENST00000251722 RHOCP08134 193 aa13.19□□□□□ -0.3
USP40-201ENST00000251722 CRELD2Q6UXH1 353 aaPredicted RBP13.19□□□□□ -0.3
USP40-201ENST00000251722 TGS1Q96RS0 853 aaKnown RBP13.19□□□□□ -0.3
USP40-201ENST00000251722 OXCT2Q9BYC2 517 aaPredicted RBP13.19□□□□□ -0.3
USP40-201ENST00000251722 C20orf96Q9NUD7 363 aaPredicted RBP13.19□□□□□ -0.3
USP40-201ENST00000251722 WARS2Q9UGM6 360 aaKnown RBP13.19□□□□□ -0.3
USP40-201ENST00000251722 MAGEB16A2A368 324 aa13.18□□□□□ -0.3
USP40-201ENST00000251722 FAM205CA6NFA0 338 aa13.18□□□□□ -0.3
USP40-201ENST00000251722 PHF20L1A8MW92 1017 aa13.18□□□□□ -0.3
USP40-201ENST00000251722 MED24O75448 989 aa13.18□□□□□ -0.3
USP40-201ENST00000251722 ACADMP11310 421 aa13.18□□□□□ -0.3
USP40-201ENST00000251722 INSRRP14616 1297 aa13.18□□□□□ -0.3
USP40-201ENST00000251722 PTPRAP18433 802 aa13.18□□□□□ -0.3
USP40-201ENST00000251722 CCNHP51946 323 aaPredicted RBP13.18□□□□□ -0.3
USP40-201ENST00000251722 NCKAP1LP55160 1127 aa13.18□□□□□ -0.3
USP40-201ENST00000251722 GSCP56915 257 aaPredicted RBP13.18□□□□□ -0.3
USP40-201ENST00000251722 FAM83EQ2M2I3 478 aa13.18□□□□□ -0.3
USP40-201ENST00000251722 MCCC1Q96RQ3 725 aaPredicted RBP13.18□□□□□ -0.3
USP40-201ENST00000251722 TRABDQ9H4I3 376 aa13.18□□□□□ -0.3
USP40-201ENST00000251722 CD274Q9NZQ7 290 aa13.18□□□□□ -0.3
USP40-201ENST00000251722 FOXN1O15353 648 aa13.18□□□□□ -0.3
USP40-201ENST00000251722 CYP2C18P33260 490 aa13.18□□□□□ -0.3
USP40-201ENST00000251722 PTGISQ16647 500 aa13.18□□□□□ -0.3
USP40-201ENST00000251722 OVOS1Q6IE37 1185 aa13.18□□□□□ -0.3
USP40-201ENST00000251722 ERAP2Q6P179 960 aa13.18□□□□□ -0.3
USP40-201ENST00000251722 SNX31Q8N9S9 440 aa13.18□□□□□ -0.3
USP40-201ENST00000251722 TRMT6Q9UJA5 497 aaKnown RBP13.18□□□□□ -0.3
USP40-201ENST00000251722 PLA2G4CQ9UP65 541 aa13.18□□□□□ -0.3
USP40-201ENST00000251722 MROH2AA6NES4 1674 aa13.18□□□□□ -0.3
USP40-201ENST00000251722 LZTS3O60299 673 aaPredicted RBP13.18□□□□□ -0.3
USP40-201ENST00000251722 HOXB8P17481 243 aaPredicted RBP13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms