RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 HPDLQ96IR7 371 aa19.48■□□□□ 0.71
CPSF3-201ENST00000238112 SRPK1Q96SB4 655 aaKnown RBP19.48■□□□□ 0.71
CPSF3-201ENST00000238112 CADM1Q9BY67 442 aaKnown RBP19.48■□□□□ 0.71
CPSF3-201ENST00000238112 KLC2Q9H0B6 622 aa19.48■□□□□ 0.71
CPSF3-201ENST00000238112 RAB6CQ9H0N0 254 aa19.48■□□□□ 0.71
CPSF3-201ENST00000238112 DCLRE1BQ9H816 532 aa19.48■□□□□ 0.71
CPSF3-201ENST00000238112 KCNK13Q9HB14 408 aa19.48■□□□□ 0.71
CPSF3-201ENST00000238112 USP29Q9HBJ7 922 aa19.48■□□□□ 0.71
CPSF3-201ENST00000238112 FBXO6Q9NRD1 293 aaPredicted RBP19.48■□□□□ 0.71
CPSF3-201ENST00000238112 ZC3H7BQ9UGR2 993 aaKnown RBP19.48■□□□□ 0.71
CPSF3-201ENST00000238112 HEY1Q9Y5J3 304 aa19.48■□□□□ 0.71
CPSF3-201ENST00000238112 SRCAPQ6ZRS2 3230 aa19.47■□□□□ 0.71
CPSF3-201ENST00000238112 APOL1O14791 398 aa19.47■□□□□ 0.71
CPSF3-201ENST00000238112 GYG2O15488 501 aa19.47■□□□□ 0.71
CPSF3-201ENST00000238112 DLDP09622 509 aaKnown RBP19.47■□□□□ 0.71
CPSF3-201ENST00000238112 IQCF3P0C7M6 154 aa19.47■□□□□ 0.71
CPSF3-201ENST00000238112 OSBPP22059 807 aa19.47■□□□□ 0.71
CPSF3-201ENST00000238112 GCLCP48506 637 aaPredicted RBP19.47■□□□□ 0.71
CPSF3-201ENST00000238112 SLC26A2P50443 739 aa19.47■□□□□ 0.71
CPSF3-201ENST00000238112 PDK2Q15119 407 aa19.47■□□□□ 0.71
CPSF3-201ENST00000238112 LGSNQ5TDP6 509 aa19.47■□□□□ 0.71
CPSF3-201ENST00000238112 TRNP1Q6NT89 227 aa19.47■□□□□ 0.71
CPSF3-201ENST00000238112 PLD5Q8N7P1 536 aa19.47■□□□□ 0.71
CPSF3-201ENST00000238112 SMARCAD1Q9H4L7 1026 aa19.47■□□□□ 0.71
CPSF3-201ENST00000238112 VRTNQ9H8Y1 702 aa19.47■□□□□ 0.71
CPSF3-201ENST00000238112 BARX2Q9UMQ3 279 aaPredicted RBP19.47■□□□□ 0.71
CPSF3-201ENST00000238112 TTLL3Q9Y4R7 772 aa19.47■□□□□ 0.71
CPSF3-201ENST00000238112 LRRC42Q9Y546 428 aa19.47■□□□□ 0.71
CPSF3-201ENST00000238112 PPP2R3BQ9Y5P8 575 aa19.47■□□□□ 0.71
CPSF3-201ENST00000238112 HBP1O60381 514 aa19.47■□□□□ 0.71
CPSF3-201ENST00000238112 FAM155BO75949 473 aa19.47■□□□□ 0.71
CPSF3-201ENST00000238112 SNRPAP09012 282 aaKnown RBP19.47■□□□□ 0.71
CPSF3-201ENST00000238112 TGM2P21980 687 aa19.47■□□□□ 0.71
CPSF3-201ENST00000238112 CDC25CP30307 473 aa19.47■□□□□ 0.71
CPSF3-201ENST00000238112 PHKA2P46019 1235 aa19.47■□□□□ 0.71
CPSF3-201ENST00000238112 NDST1P52848 882 aa19.47■□□□□ 0.71
CPSF3-201ENST00000238112 BCAR1P56945 870 aa19.47■□□□□ 0.71
CPSF3-201ENST00000238112 VGLL4Q14135 290 aa19.47■□□□□ 0.71
CPSF3-201ENST00000238112 MAP1SQ66K74 1059 aaPredicted RBP19.47■□□□□ 0.71
CPSF3-201ENST00000238112 C4orf50Q6ZRC1 276 aa19.47■□□□□ 0.71
CPSF3-201ENST00000238112 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP19.47■□□□□ 0.71
CPSF3-201ENST00000238112 CNTN3Q9P232 1028 aa19.47■□□□□ 0.71
CPSF3-201ENST00000238112 IL1BP01584 269 aa19.46■□□□□ 0.71
CPSF3-201ENST00000238112 PGK2P07205 417 aa19.46■□□□□ 0.71
CPSF3-201ENST00000238112 MCF2P10911 925 aa19.46■□□□□ 0.71
CPSF3-201ENST00000238112 MYL2P10916 166 aa19.46■□□□□ 0.71
CPSF3-201ENST00000238112 RBL1P28749 1068 aa19.46■□□□□ 0.71
CPSF3-201ENST00000238112 FAM182AQ5T1J6 154 aa19.46■□□□□ 0.71
CPSF3-201ENST00000238112 FAXCQ5TGI0 409 aa19.46■□□□□ 0.71
CPSF3-201ENST00000238112 TRIM68Q6AZZ1 485 aa19.46■□□□□ 0.71
CPSF3-201ENST00000238112 GADL1Q6ZQY3 521 aa19.46■□□□□ 0.71
CPSF3-201ENST00000238112 CXorf38Q8TB03 319 aa19.46■□□□□ 0.71
CPSF3-201ENST00000238112 MCUR1Q96AQ8 359 aa19.46■□□□□ 0.71
CPSF3-201ENST00000238112 PIWIL1Q96J94 861 aaKnown RBP19.46■□□□□ 0.71
CPSF3-201ENST00000238112 ASB7Q9H672 318 aa19.46■□□□□ 0.71
CPSF3-201ENST00000238112 PPP1R1BQ9UD71 204 aaPredicted RBP19.46■□□□□ 0.71
CPSF3-201ENST00000238112 ZNF180Q9UJW8 692 aa19.46■□□□□ 0.71
CPSF3-201ENST00000238112 TSPAN16Q9UKR8 245 aa19.46■□□□□ 0.71
CPSF3-201ENST00000238112 ANK1P16157 1881 aa19.46■□□□□ 0.71
CPSF3-201ENST00000238112 I3L4J1 428 aa19.46■□□□□ 0.71
CPSF3-201ENST00000238112 KLF11O14901 512 aa19.46■□□□□ 0.71
CPSF3-201ENST00000238112 LIN7AO14910 233 aaPredicted RBP19.46■□□□□ 0.71
CPSF3-201ENST00000238112 APRTP07741 180 aa19.46■□□□□ 0.71
CPSF3-201ENST00000238112 PTDSS1P48651 473 aaKnown RBP19.46■□□□□ 0.71
CPSF3-201ENST00000238112 BOLA3Q53S33 107 aa19.46■□□□□ 0.71
CPSF3-201ENST00000238112 RFWD3Q6PCD5 774 aa19.46■□□□□ 0.71
CPSF3-201ENST00000238112 TRIM42Q8IWZ5 723 aa19.46■□□□□ 0.71
CPSF3-201ENST00000238112 VPS52Q8N1B4 723 aa19.46■□□□□ 0.71
CPSF3-201ENST00000238112 RTP4Q96DX8 246 aa19.46■□□□□ 0.71
CPSF3-201ENST00000238112 TRIM6Q9C030 488 aaPredicted RBP19.46■□□□□ 0.71
CPSF3-201ENST00000238112 POPDC2Q9HBU9 364 aa19.46■□□□□ 0.71
CPSF3-201ENST00000238112 NGRNQ9NPE2 291 aaKnown RBP19.46■□□□□ 0.71
CPSF3-201ENST00000238112 GPATCH2LQ9NWQ4 482 aa19.46■□□□□ 0.71
CPSF3-201ENST00000238112 TRDMT1O14717 391 aaKnown RBP19.45■□□□□ 0.7
CPSF3-201ENST00000238112 CSDE1O75534 798 aaKnown RBP19.45■□□□□ 0.7
CPSF3-201ENST00000238112 USP2O75604 605 aaPredicted RBP19.45■□□□□ 0.7
CPSF3-201ENST00000238112 ESRRAP11474 423 aaPredicted RBP19.45■□□□□ 0.7
CPSF3-201ENST00000238112 TMEM132DQ14C87 1099 aa19.45■□□□□ 0.7
CPSF3-201ENST00000238112 KRT72Q14CN4 511 aa19.45■□□□□ 0.7
CPSF3-201ENST00000238112 LCLAT1Q6UWP7 414 aa19.45■□□□□ 0.7
CPSF3-201ENST00000238112 ILDR2Q71H61 639 aa19.45■□□□□ 0.7
CPSF3-201ENST00000238112 MICAL1Q8TDZ2 1067 aa19.45■□□□□ 0.7
CPSF3-201ENST00000238112 OXNAD1Q96HP4 312 aaPredicted RBP19.45■□□□□ 0.7
CPSF3-201ENST00000238112 NFKBIZQ9BYH8 718 aa19.45■□□□□ 0.7
CPSF3-201ENST00000238112 ETNK2Q9NVF9 386 aa19.45■□□□□ 0.7
CPSF3-201ENST00000238112 GSC2O15499 205 aa19.45■□□□□ 0.7
CPSF3-201ENST00000238112 DESP17661 470 aa19.45■□□□□ 0.7
CPSF3-201ENST00000238112 CYP3A5P20815 502 aa19.45■□□□□ 0.7
CPSF3-201ENST00000238112 PAX7P23759 505 aa19.45■□□□□ 0.7
CPSF3-201ENST00000238112 IGBP1P78318 339 aa19.45■□□□□ 0.7
CPSF3-201ENST00000238112 INCA1Q0VD86 236 aa19.45■□□□□ 0.7
CPSF3-201ENST00000238112 CBLBQ13191 982 aa19.45■□□□□ 0.7
CPSF3-201ENST00000238112 TSNAXIP1Q2TAA8 658 aa19.45■□□□□ 0.7
CPSF3-201ENST00000238112 CCDC14Q49A88 953 aa19.45■□□□□ 0.7
CPSF3-201ENST00000238112 CDHR3Q6ZTQ4 885 aa19.45■□□□□ 0.7
CPSF3-201ENST00000238112 TEX9Q8N6V9 391 aa19.45■□□□□ 0.7
CPSF3-201ENST00000238112 PRR11Q96HE9 360 aaPredicted RBP19.45■□□□□ 0.7
CPSF3-201ENST00000238112 FAM167BQ9BTA0 163 aa19.45■□□□□ 0.7
CPSF3-201ENST00000238112 NT5C1AQ9BXI3 368 aa19.45■□□□□ 0.7
CPSF3-201ENST00000238112 SDAD1Q9NVU7 687 aaKnown RBP eCLIP19.45■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms