RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 LRPPRCP42704 1394 aaKnown RBP15.12■□□□□ 0.01
SCN1A-222ENST00000642141 C14orf93Q9H972 538 aaKnown RBP15.12■□□□□ 0.01
SCN1A-222ENST00000642141 ADAMTS2O95450 1211 aa15.11■□□□□ 0.01
SCN1A-222ENST00000642141 IFT172Q9UG01 1749 aa15.11■□□□□ 0.01
SCN1A-222ENST00000642141 YTHDC2Q9H6S0 1430 aaKnown RBP15.1■□□□□ 0.01
SCN1A-222ENST00000642141 FOXO3O43524 673 aa15.1■□□□□ 0.01
SCN1A-222ENST00000642141 DCAF11Q8TEB1 546 aa15.1■□□□□ 0.01
SCN1A-222ENST00000642141 C8orf37Q96NL8 207 aa15.1■□□□□ 0.01
SCN1A-222ENST00000642141 ABCC11Q96J66 1382 aa15.1■□□□□ 0.01
SCN1A-222ENST00000642141 SHPRHQ149N8 1683 aa15.09■□□□□ 0.01
SCN1A-222ENST00000642141 NHSL1Q5SYE7 1610 aa15.09■□□□□ 0.01
SCN1A-222ENST00000642141 PNPLA6Q8IY17 1366 aa15.09■□□□□ 0.01
SCN1A-222ENST00000642141 PRAG1Q86YV5 1406 aa15.09■□□□□ 0.01
SCN1A-222ENST00000642141 ZNF772Q68DY9 489 aaPredicted RBP15.08■□□□□ 0
SCN1A-222ENST00000642141 AFF2P51816 1311 aa15.08■□□□□ 0
SCN1A-222ENST00000642141 PRAM1Q96QH2 718 aa15.07■□□□□ 0
SCN1A-222ENST00000642141 SOS2Q07890 1332 aaPredicted RBP15.07■□□□□ 0
SCN1A-222ENST00000642141 DHX57Q6P158 1386 aaKnown RBP15.07■□□□□ 0
SCN1A-222ENST00000642141 PLEKHG5O94827 1062 aa15.06■□□□□ 0
SCN1A-222ENST00000642141 POGKQ9P215 609 aa15.06■□□□□ 0
SCN1A-222ENST00000642141 TRAK1Q9UPV9 953 aa15.06■□□□□ 0
SCN1A-222ENST00000642141 TECPR2O15040 1411 aa15.06■□□□□ 0
SCN1A-222ENST00000642141 HRCP23327 699 aa15.05■□□□□ -0
SCN1A-222ENST00000642141 NGLY1Q96IV0 654 aa15.05■□□□□ -0
SCN1A-222ENST00000642141 NRXN1Q9ULB1 1477 aa15.05■□□□□ -0
SCN1A-222ENST00000642141 MYOM2P54296 1465 aa15.04■□□□□ -0
SCN1A-222ENST00000642141 HIRIP3Q9BW71 556 aaPredicted RBP15.04■□□□□ -0
SCN1A-222ENST00000642141 CDC42BPGQ6DT37 1551 aa15.03■□□□□ -0
SCN1A-222ENST00000642141 NPHP3Q7Z494 1330 aa15.03■□□□□ -0
SCN1A-222ENST00000642141 RXRBP28702 533 aa15.03■□□□□ -0
SCN1A-222ENST00000642141 SIRT1Q96EB6 747 aa15.02■□□□□ -0
SCN1A-222ENST00000642141 QTRT2Q9H974 415 aaKnown RBP15.02■□□□□ -0
SCN1A-222ENST00000642141 MINK1Q8N4C8 1332 aaPredicted RBP15.01□□□□□ -0.01
SCN1A-222ENST00000642141 KRT28Q7Z3Y7 464 aa15□□□□□ -0.01
SCN1A-222ENST00000642141 KNDC1Q76NI1 1749 aa15□□□□□ -0.01
SCN1A-222ENST00000642141 PMFBP1Q8TBY8 1022 aa14.99□□□□□ -0.01
SCN1A-222ENST00000642141 PHF8Q9UPP1 1060 aa14.99□□□□□ -0.01
SCN1A-222ENST00000642141 PXDNQ92626 1479 aa14.99□□□□□ -0.01
SCN1A-222ENST00000642141 LMOD2Q6P5Q4 547 aa14.98□□□□□ -0.01
SCN1A-222ENST00000642141 USP21Q9UK80 565 aa14.98□□□□□ -0.01
SCN1A-222ENST00000642141 LAMC1P11047 1609 aa14.98□□□□□ -0.01
SCN1A-222ENST00000642141 PSME1Q06323 249 aa14.97□□□□□ -0.01
SCN1A-222ENST00000642141 FMN2Q9NZ56 1722 aa14.97□□□□□ -0.01
SCN1A-222ENST00000642141 ADGRB1O14514 1584 aa14.96□□□□□ -0.01
SCN1A-222ENST00000642141 CABLES1Q8TDN4 633 aa14.96□□□□□ -0.01
SCN1A-222ENST00000642141 SPATA31A3Q5VYP0 1347 aa14.94□□□□□ -0.02
SCN1A-222ENST00000642141 RGPD8O14715 1765 aaPredicted RBP14.94□□□□□ -0.02
SCN1A-222ENST00000642141 RBM6P78332 1123 aaKnown RBP14.94□□□□□ -0.02
SCN1A-222ENST00000642141 HAP1P54257 671 aaPredicted RBP14.93□□□□□ -0.02
SCN1A-222ENST00000642141 NBPF1Q3BBV0 1214 aa14.93□□□□□ -0.02
SCN1A-222ENST00000642141 STAC3Q96MF2 364 aa14.93□□□□□ -0.02
SCN1A-222ENST00000642141 SIN3AQ96ST3 1273 aa14.93□□□□□ -0.02
SCN1A-222ENST00000642141 DLC1Q96QB1 1528 aa14.92□□□□□ -0.02
SCN1A-222ENST00000642141 WASLO00401 505 aaPredicted RBP14.92□□□□□ -0.02
SCN1A-222ENST00000642141 NEUROD1Q13562 356 aa14.92□□□□□ -0.02
SCN1A-222ENST00000642141 FNBP4Q8N3X1 1017 aaPredicted RBP14.92□□□□□ -0.02
SCN1A-222ENST00000642141 UPF1Q92900 1129 aaKnown RBP eCLIP14.92□□□□□ -0.02
SCN1A-222ENST00000642141 PRR36Q9H6K5 1346 aa14.92□□□□□ -0.02
SCN1A-222ENST00000642141 TRPC5Q9UL62 973 aaPredicted RBP14.91□□□□□ -0.02
SCN1A-222ENST00000642141 COL22A1Q8NFW1 1626 aaPredicted RBP14.9□□□□□ -0.02
SCN1A-222ENST00000642141 RGS12O14924 1447 aa14.9□□□□□ -0.02
SCN1A-222ENST00000642141 KIF1AQ12756 1690 aa14.89□□□□□ -0.03
SCN1A-222ENST00000642141 USP32Q8NFA0 1604 aa14.88□□□□□ -0.03
SCN1A-222ENST00000642141 PAK3O75914 559 aaPredicted RBP14.88□□□□□ -0.03
SCN1A-222ENST00000642141 NGDNQ8NEJ9 315 aaKnown RBP14.88□□□□□ -0.03
SCN1A-222ENST00000642141 L3MBTL2Q969R5 705 aa14.88□□□□□ -0.03
SCN1A-222ENST00000642141 CDK19Q9BWU1 502 aa14.88□□□□□ -0.03
SCN1A-222ENST00000642141 TNS3Q68CZ2 1445 aa14.87□□□□□ -0.03
SCN1A-222ENST00000642141 NUDT16Q96DE0 195 aaKnown RBP14.87□□□□□ -0.03
SCN1A-222ENST00000642141 BCL9LQ86UU0 1499 aa14.87□□□□□ -0.03
SCN1A-222ENST00000642141 ANKARQ7Z5J8 1434 aa14.86□□□□□ -0.03
SCN1A-222ENST00000642141 CDK12Q9NYV4 1490 aaPredicted RBP14.86□□□□□ -0.03
SCN1A-222ENST00000642141 SBNO1A3KN83 1393 aa14.85□□□□□ -0.03
SCN1A-222ENST00000642141 GPRASP1Q5JY77 1395 aa14.85□□□□□ -0.03
SCN1A-222ENST00000642141 ATRNO75882 1429 aa14.85□□□□□ -0.03
SCN1A-222ENST00000642141 ADGRB2O60241 1585 aa14.85□□□□□ -0.03
SCN1A-222ENST00000642141 UNC5CLQ8IV45 518 aa14.84□□□□□ -0.03
SCN1A-222ENST00000642141 GJD4Q96KN9 370 aaPredicted RBP14.84□□□□□ -0.03
SCN1A-222ENST00000642141 CCDC9Q9Y3X0 531 aaKnown RBP14.84□□□□□ -0.03
SCN1A-222ENST00000642141 TULP4Q9NRJ4 1543 aa14.83□□□□□ -0.04
SCN1A-222ENST00000642141 FAM83GA6ND36 823 aa14.83□□□□□ -0.04
SCN1A-222ENST00000642141 NUTM2GQ5VZR2 741 aa14.83□□□□□ -0.04
SCN1A-222ENST00000642141 ARHGEF10O15013 1369 aa14.83□□□□□ -0.04
SCN1A-222ENST00000642141 EIF3AQ14152 1382 aaKnown RBP14.83□□□□□ -0.04
SCN1A-222ENST00000642141 ARHGEF28Q8N1W1 1705 aaKnown RBP14.83□□□□□ -0.04
SCN1A-222ENST00000642141 SRPK2P78362 688 aaKnown RBP14.81□□□□□ -0.04
SCN1A-222ENST00000642141 CABP2Q9NPB3 220 aa14.81□□□□□ -0.04
SCN1A-222ENST00000642141 MARF1Q9Y4F3 1742 aaKnown RBP14.8□□□□□ -0.04
SCN1A-222ENST00000642141 SLIT2O94813 1529 aa14.79□□□□□ -0.04
SCN1A-222ENST00000642141 ACEP12821 1306 aa14.79□□□□□ -0.04
SCN1A-222ENST00000642141 CENPJQ9HC77 1338 aaPredicted RBP14.79□□□□□ -0.04
SCN1A-222ENST00000642141 CCDC61Q9Y6R9 512 aa14.79□□□□□ -0.04
SCN1A-222ENST00000642141 ATP7BP35670 1465 aa14.78□□□□□ -0.04
SCN1A-222ENST00000642141 RALGAPBQ86X10 1494 aa14.78□□□□□ -0.04
SCN1A-222ENST00000642141 NBPF8Q3BBV2 869 aa14.78□□□□□ -0.04
SCN1A-222ENST00000642141 BTG4Q9NY30 223 aa14.78□□□□□ -0.04
SCN1A-222ENST00000642141 ATAD2Q6PL18 1390 aa14.77□□□□□ -0.04
SCN1A-222ENST00000642141 TRPM3Q9HCF6 1732 aaPredicted RBP14.77□□□□□ -0.05
SCN1A-222ENST00000642141 KIAA1210Q9ULL0 1709 aa14.77□□□□□ -0.05
SCN1A-222ENST00000642141 A0A0G2JS52 829 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms