RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 CPSF2Q9P2I0 782 aaKnown RBP4.36□□□□□ -1.71
SCN1A-221ENST00000641996 ABL2P42684 1182 aa4.35□□□□□ -1.71
SCN1A-221ENST00000641996 GSE1Q14687 1217 aa4.35□□□□□ -1.71
SCN1A-221ENST00000641996 NUTM2GQ5VZR2 741 aa4.35□□□□□ -1.71
SCN1A-221ENST00000641996 TSPYL1Q9H0U9 437 aa4.35□□□□□ -1.71
SCN1A-221ENST00000641996 MRGBPQ9NV56 204 aa4.35□□□□□ -1.71
SCN1A-221ENST00000641996 ARL10Q8N8L6 244 aa4.35□□□□□ -1.71
SCN1A-221ENST00000641996 V9GYY5 206 aaPredicted RBP4.35□□□□□ -1.71
SCN1A-221ENST00000641996 LIG1P18858 919 aa4.35□□□□□ -1.71
SCN1A-221ENST00000641996 MAP2K1Q02750 393 aaPredicted RBP4.35□□□□□ -1.71
SCN1A-221ENST00000641996 TMX1Q9H3N1 280 aa4.35□□□□□ -1.71
SCN1A-221ENST00000641996 ZKSCAN2Q63HK3 967 aa4.35□□□□□ -1.71
SCN1A-221ENST00000641996 NAP1L4Q99733 375 aaKnown RBP4.35□□□□□ -1.71
SCN1A-221ENST00000641996 CXorf38Q8TB03 319 aa4.35□□□□□ -1.71
SCN1A-221ENST00000641996 UBAP1Q9NZ09 502 aa4.35□□□□□ -1.71
SCN1A-221ENST00000641996 MPHOSPH6Q99547 160 aaKnown RBP4.35□□□□□ -1.71
SCN1A-221ENST00000641996 SF3A1Q15459 793 aaKnown RBP4.35□□□□□ -1.71
SCN1A-221ENST00000641996 KRBA2Q6ZNG9 492 aa4.35□□□□□ -1.71
SCN1A-221ENST00000641996 ZNF662Q6ZS27 426 aa4.35□□□□□ -1.71
SCN1A-221ENST00000641996 TTC30BQ8N4P2 665 aa4.35□□□□□ -1.71
SCN1A-221ENST00000641996 SMAP1Q8IYB5 467 aaPredicted RBP4.34□□□□□ -1.71
SCN1A-221ENST00000641996 PPP2R5AQ15172 486 aa4.34□□□□□ -1.71
SCN1A-221ENST00000641996 VIMP08670 466 aaKnown RBP4.34□□□□□ -1.71
SCN1A-221ENST00000641996 NOM1Q5C9Z4 860 aaKnown RBP4.34□□□□□ -1.71
SCN1A-221ENST00000641996 TRIM29Q14134 588 aa4.34□□□□□ -1.71
SCN1A-221ENST00000641996 NBPF20Q3BBV1 942 aa4.34□□□□□ -1.71
SCN1A-221ENST00000641996 ANKRD12Q6UB98 2062 aa4.34□□□□□ -1.71
SCN1A-221ENST00000641996 E2F5Q15329 346 aa4.34□□□□□ -1.71
SCN1A-221ENST00000641996 MNS1Q8NEH6 495 aa4.34□□□□□ -1.71
SCN1A-221ENST00000641996 SLC4A8Q2Y0W8 1093 aa4.34□□□□□ -1.71
SCN1A-221ENST00000641996 LONRF3Q496Y0 759 aa4.34□□□□□ -1.71
SCN1A-221ENST00000641996 TIGD1Q96MW7 591 aa4.34□□□□□ -1.71
SCN1A-221ENST00000641996 SAFB2Q14151 953 aaKnown RBP eCLIP4.34□□□□□ -1.72
SCN1A-221ENST00000641996 MIER1Q8N108 512 aa4.34□□□□□ -1.72
SCN1A-221ENST00000641996 SGSM3Q96HU1 749 aa4.34□□□□□ -1.72
SCN1A-221ENST00000641996 NBPF9Q3BBW0 867 aa4.34□□□□□ -1.72
SCN1A-221ENST00000641996 TTLL5Q6EMB2 1281 aa4.34□□□□□ -1.72
SCN1A-221ENST00000641996 CCDC146Q8IYE0 955 aa4.34□□□□□ -1.72
SCN1A-221ENST00000641996 EPB41L2O43491 1005 aaKnown RBP4.34□□□□□ -1.72
SCN1A-221ENST00000641996 CREB3O43889 395 aa4.34□□□□□ -1.72
SCN1A-221ENST00000641996 LMBRD2Q68DH5 695 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-221ENST00000641996 PDZRN4Q6ZMN7 1036 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-221ENST00000641996 FYB1O15117 783 aa4.33□□□□□ -1.72
SCN1A-221ENST00000641996 TPX2Q9ULW0 747 aaKnown RBP4.33□□□□□ -1.72
SCN1A-221ENST00000641996 RDXP35241 583 aaKnown RBP4.33□□□□□ -1.72
SCN1A-221ENST00000641996 CASQ1P31415 396 aa4.33□□□□□ -1.72
SCN1A-221ENST00000641996 CT47A1Q5JQC4 288 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-221ENST00000641996 MTERF4Q7Z6M4 381 aaKnown RBP4.33□□□□□ -1.72
SCN1A-221ENST00000641996 RGL2O15211 777 aa4.33□□□□□ -1.72
SCN1A-221ENST00000641996 RAB11FIP3O75154 756 aa4.33□□□□□ -1.72
SCN1A-221ENST00000641996 USP8P40818 1118 aa4.33□□□□□ -1.72
SCN1A-221ENST00000641996 DYDC1Q8WWB3 177 aa4.33□□□□□ -1.72
SCN1A-221ENST00000641996 MTA3Q9BTC8 594 aa4.33□□□□□ -1.72
SCN1A-221ENST00000641996 USP25Q9UHP3 1055 aa4.33□□□□□ -1.72
SCN1A-221ENST00000641996 ZNF853P0CG23 659 aa4.33□□□□□ -1.72
SCN1A-221ENST00000641996 IBSPP21815 317 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-221ENST00000641996 NBPF7P0C2Y1 421 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-221ENST00000641996 SATB1Q01826 763 aa4.33□□□□□ -1.72
SCN1A-221ENST00000641996 FRAT1Q92837 279 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-221ENST00000641996 TRIM11Q96F44 468 aa4.33□□□□□ -1.72
SCN1A-221ENST00000641996 C9orf131Q5VYM1 1079 aa4.32□□□□□ -1.72
SCN1A-221ENST00000641996 RABEP2Q9H5N1 569 aa4.32□□□□□ -1.72
SCN1A-221ENST00000641996 IQSEC3Q9UPP2 1182 aaPredicted RBP4.32□□□□□ -1.72
SCN1A-221ENST00000641996 MYO18AQ92614 2054 aaKnown RBP4.32□□□□□ -1.72
SCN1A-221ENST00000641996 BAZ1BQ9UIG0 1483 aaKnown RBP4.32□□□□□ -1.72
SCN1A-221ENST00000641996 MPP4Q96JB8 637 aa4.32□□□□□ -1.72
SCN1A-221ENST00000641996 FRMD3A2A2Y4 597 aa4.32□□□□□ -1.72
SCN1A-221ENST00000641996 HMMRO75330 724 aa4.32□□□□□ -1.72
SCN1A-221ENST00000641996 SHQ1Q6PI26 577 aaKnown RBP4.32□□□□□ -1.72
SCN1A-221ENST00000641996 EGFL6Q8IUX8 553 aa4.32□□□□□ -1.72
SCN1A-221ENST00000641996 NUCKS1Q9H1E3 243 aaKnown RBP4.32□□□□□ -1.72
SCN1A-221ENST00000641996 GIMAP7Q8NHV1 300 aa4.32□□□□□ -1.72
SCN1A-221ENST00000641996 LRRC27Q9C0I9 530 aa4.32□□□□□ -1.72
SCN1A-221ENST00000641996 IRF5Q13568 498 aa4.32□□□□□ -1.72
SCN1A-221ENST00000641996 TSHZ1Q6ZSZ6 1077 aa4.32□□□□□ -1.72
SCN1A-221ENST00000641996 CCDC47Q96A33 483 aaKnown RBP4.32□□□□□ -1.72
SCN1A-221ENST00000641996 CCAR1Q8IX12 1150 aaKnown RBP4.31□□□□□ -1.72
SCN1A-221ENST00000641996 SCP2P22307 547 aa4.31□□□□□ -1.72
SCN1A-221ENST00000641996 MKRN3Q13064 507 aaKnown RBP4.31□□□□□ -1.72
SCN1A-221ENST00000641996 FAM117AQ9C073 453 aa4.31□□□□□ -1.72
SCN1A-221ENST00000641996 RABL2BQ9UNT1 228 aa4.31□□□□□ -1.72
SCN1A-221ENST00000641996 CEP83Q9Y592 693 aa4.31□□□□□ -1.72
SCN1A-221ENST00000641996 CCDC96Q2M329 555 aa4.31□□□□□ -1.72
SCN1A-221ENST00000641996 SPC24Q8NBT2 197 aa4.31□□□□□ -1.72
SCN1A-221ENST00000641996 LETM1O95202 739 aaPredicted RBP4.31□□□□□ -1.72
SCN1A-221ENST00000641996 CBX1P83916 185 aa4.31□□□□□ -1.72
SCN1A-221ENST00000641996 MSL3Q8N5Y2 521 aaKnown RBP4.31□□□□□ -1.72
SCN1A-221ENST00000641996 CCDC94Q9BW85 323 aaPredicted RBP4.31□□□□□ -1.72
SCN1A-221ENST00000641996 KIAA1211Q6ZU35 1233 aa4.31□□□□□ -1.72
SCN1A-221ENST00000641996 TOMM20Q15388 145 aa4.31□□□□□ -1.72
SCN1A-221ENST00000641996 FMNL3Q8IVF7 1028 aa4.31□□□□□ -1.72
SCN1A-221ENST00000641996 KCNV2Q8TDN2 545 aa4.31□□□□□ -1.72
SCN1A-221ENST00000641996 DIS3Q9Y2L1 958 aaKnown RBP4.31□□□□□ -1.72
SCN1A-221ENST00000641996 U3KPZ7 1027 aaPredicted RBP4.31□□□□□ -1.72
SCN1A-221ENST00000641996 HDGFL2Q7Z4V5 671 aaPredicted RBP4.31□□□□□ -1.72
SCN1A-221ENST00000641996 ATP6V1E2Q96A05 226 aa4.31□□□□□ -1.72
SCN1A-221ENST00000641996 RABL2AQ9UBK7 228 aaPredicted RBP4.31□□□□□ -1.72
SCN1A-221ENST00000641996 R3HCC1Q9Y3T6 440 aaKnown RBP4.31□□□□□ -1.72
SCN1A-221ENST00000641996 KIF3AQ9Y496 699 aa4.31□□□□□ -1.72
SCN1A-221ENST00000641996 DDX49Q9Y6V7 483 aaKnown RBP4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms