RNA–Protein interactions for RNA: ENST00000641899.1

SRRM4-204, Transcript of serine/arginine repetitive matrix 4, humanhuman

Gene SRRM4, Length 682 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRRM4-204ENST00000641899 PRAG1Q86YV5 1406 aa22.75■■□□□ 1.23
SRRM4-204ENST00000641899 CLTCL1P53675 1640 aa22.74■■□□□ 1.23
SRRM4-204ENST00000641899 GJD4Q96KN9 370 aaPredicted RBP22.72■■□□□ 1.23
SRRM4-204ENST00000641899 MYOM2P54296 1465 aa22.69■■□□□ 1.22
SRRM4-204ENST00000641899 FOXO3O43524 673 aa22.69■■□□□ 1.22
SRRM4-204ENST00000641899 KIF1BO60333 1816 aa22.68■■□□□ 1.22
SRRM4-204ENST00000641899 COL22A1Q8NFW1 1626 aaPredicted RBP22.68■■□□□ 1.22
SRRM4-204ENST00000641899 SF3B2Q13435 895 aaKnown RBP22.68■■□□□ 1.22
SRRM4-204ENST00000641899 SRCAPQ6ZRS2 3230 aa22.68■■□□□ 1.22
SRRM4-204ENST00000641899 BCL9LQ86UU0 1499 aa22.66■■□□□ 1.22
SRRM4-204ENST00000641899 SLC4A1APQ9BWU0 796 aaKnown RBP22.66■■□□□ 1.22
SRRM4-204ENST00000641899 UNC5CLQ8IV45 518 aa22.65■■□□□ 1.22
SRRM4-204ENST00000641899 CDC42BPGQ6DT37 1551 aa22.64■■□□□ 1.22
SRRM4-204ENST00000641899 HAP1P54257 671 aaPredicted RBP22.64■■□□□ 1.21
SRRM4-204ENST00000641899 PXDNQ92626 1479 aa22.63■■□□□ 1.21
SRRM4-204ENST00000641899 XPCQ01831 940 aaPredicted RBP22.63■■□□□ 1.21
SRRM4-204ENST00000641899 BLMP54132 1417 aaPredicted RBP22.63■■□□□ 1.21
SRRM4-204ENST00000641899 NAIPQ13075 1403 aa22.62■■□□□ 1.21
SRRM4-204ENST00000641899 PPARGC1BQ86YN6 1023 aaKnown RBP22.6■■□□□ 1.21
SRRM4-204ENST00000641899 STK26Q9P289 416 aa22.6■■□□□ 1.21
SRRM4-204ENST00000641899 CCDC144AA2RUR9 1427 aa22.59■■□□□ 1.21
SRRM4-204ENST00000641899 PSME1Q06323 249 aa22.59■■□□□ 1.21
SRRM4-204ENST00000641899 SPATA31A3Q5VYP0 1347 aa22.57■■□□□ 1.2
SRRM4-204ENST00000641899 NUTM2FA1L443 756 aa22.57■■□□□ 1.2
SRRM4-204ENST00000641899 ANKRD30BQ9BXX2 1392 aa22.57■■□□□ 1.2
SRRM4-204ENST00000641899 RALGAPBQ86X10 1494 aa22.55■■□□□ 1.2
SRRM4-204ENST00000641899 ABCC11Q96J66 1382 aa22.55■■□□□ 1.2
SRRM4-204ENST00000641899 KRT28Q7Z3Y7 464 aa22.55■■□□□ 1.2
SRRM4-204ENST00000641899 WAPLQ7Z5K2 1190 aa22.55■■□□□ 1.2
SRRM4-204ENST00000641899 CCDC9Q9Y3X0 531 aaKnown RBP22.55■■□□□ 1.2
SRRM4-204ENST00000641899 TECPR2O15040 1411 aa22.55■■□□□ 1.2
SRRM4-204ENST00000641899 RRBP1Q9P2E9 1410 aaKnown RBP22.55■■□□□ 1.2
SRRM4-204ENST00000641899 SLIT2O94813 1529 aa22.54■■□□□ 1.2
SRRM4-204ENST00000641899 SEPT12Q8IYM1 358 aa22.53■■□□□ 1.2
SRRM4-204ENST00000641899 ADGRF5Q8IZF2 1346 aa22.53■■□□□ 1.2
SRRM4-204ENST00000641899 VPS72Q15906 364 aa22.52■■□□□ 1.2
SRRM4-204ENST00000641899 RGL3Q3MIN7 710 aa22.52■■□□□ 1.2
SRRM4-204ENST00000641899 EP400Q96L91 3159 aa22.5■■□□□ 1.19
SRRM4-204ENST00000641899 SIRT1Q96EB6 747 aa22.5■■□□□ 1.19
SRRM4-204ENST00000641899 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.5■■□□□ 1.19
SRRM4-204ENST00000641899 MARF1Q9Y4F3 1742 aaKnown RBP22.49■■□□□ 1.19
SRRM4-204ENST00000641899 PPLO60437 1756 aa22.49■■□□□ 1.19
SRRM4-204ENST00000641899 KRT27Q7Z3Y8 459 aa22.49■■□□□ 1.19
SRRM4-204ENST00000641899 PHF8Q9UPP1 1060 aa22.49■■□□□ 1.19
SRRM4-204ENST00000641899 A0A0G2JS52 829 aa22.48■■□□□ 1.19
SRRM4-204ENST00000641899 BAG6P46379 1132 aa22.48■■□□□ 1.19
SRRM4-204ENST00000641899 MYT1Q01538 1121 aa22.48■■□□□ 1.19
SRRM4-204ENST00000641899 LMOD2Q6P5Q4 547 aa22.48■■□□□ 1.19
SRRM4-204ENST00000641899 DEFB132Q7Z7B7 95 aa22.48■■□□□ 1.19
SRRM4-204ENST00000641899 KIF1AQ12756 1690 aa22.48■■□□□ 1.19
SRRM4-204ENST00000641899 ARHGEF10O15013 1369 aa22.48■■□□□ 1.19
SRRM4-204ENST00000641899 TMEM132EQ6IEE7 984 aa22.47■■□□□ 1.19
SRRM4-204ENST00000641899 TNS3Q68CZ2 1445 aa22.47■■□□□ 1.19
SRRM4-204ENST00000641899 ONECUT3O60422 494 aaPredicted RBP22.46■■□□□ 1.19
SRRM4-204ENST00000641899 SBNO1A3KN83 1393 aa22.45■■□□□ 1.18
SRRM4-204ENST00000641899 GLI3P10071 1580 aa22.45■■□□□ 1.18
SRRM4-204ENST00000641899 USP32Q8NFA0 1604 aa22.44■■□□□ 1.18
SRRM4-204ENST00000641899 YTHDC2Q9H6S0 1430 aaKnown RBP22.44■■□□□ 1.18
SRRM4-204ENST00000641899 PLEKHH1Q9ULM0 1364 aa22.43■■□□□ 1.18
SRRM4-204ENST00000641899 DHX57Q6P158 1386 aaKnown RBP22.42■■□□□ 1.18
SRRM4-204ENST00000641899 ACIN1Q9UKV3 1341 aaKnown RBP22.42■■□□□ 1.18
SRRM4-204ENST00000641899 PIK3C2GO75747 1445 aa22.41■■□□□ 1.18
SRRM4-204ENST00000641899 CABLES1Q8TDN4 633 aa22.41■■□□□ 1.18
SRRM4-204ENST00000641899 SPATA31E1Q6ZUB1 1445 aa22.4■■□□□ 1.18
SRRM4-204ENST00000641899 PLEKHG5O94827 1062 aa22.4■■□□□ 1.18
SRRM4-204ENST00000641899 FMN2Q9NZ56 1722 aa22.39■■□□□ 1.17
SRRM4-204ENST00000641899 KNDC1Q76NI1 1749 aa22.38■■□□□ 1.17
SRRM4-204ENST00000641899 C14orf93Q9H972 538 aaKnown RBP22.38■■□□□ 1.17
SRRM4-204ENST00000641899 MPHOSPH9Q99550 1183 aa22.37■■□□□ 1.17
SRRM4-204ENST00000641899 POGKQ9P215 609 aa22.37■■□□□ 1.17
SRRM4-204ENST00000641899 NRXN1Q9ULB1 1477 aa22.36■■□□□ 1.17
SRRM4-204ENST00000641899 FAM83GA6ND36 823 aa22.35■■□□□ 1.17
SRRM4-204ENST00000641899 FAM98CQ17RN3 349 aaKnown RBP22.35■■□□□ 1.17
SRRM4-204ENST00000641899 PRAM1Q96QH2 718 aa22.35■■□□□ 1.17
SRRM4-204ENST00000641899 GPRASP1Q5JY77 1395 aa22.35■■□□□ 1.17
SRRM4-204ENST00000641899 NWD2Q9ULI1 1742 aa22.34■■□□□ 1.17
SRRM4-204ENST00000641899 LRP5O75197 1615 aa22.34■■□□□ 1.17
SRRM4-204ENST00000641899 EIF3AQ14152 1382 aaKnown RBP22.34■■□□□ 1.17
SRRM4-204ENST00000641899 ANKARQ7Z5J8 1434 aa22.33■■□□□ 1.17
SRRM4-204ENST00000641899 BTG4Q9NY30 223 aa22.33■■□□□ 1.17
SRRM4-204ENST00000641899 PSDA5PKW4 1024 aaPredicted RBP22.32■■□□□ 1.16
SRRM4-204ENST00000641899 HRCP23327 699 aa22.32■■□□□ 1.16
SRRM4-204ENST00000641899 SAFB2Q14151 953 aaKnown RBP eCLIP22.32■■□□□ 1.16
SRRM4-204ENST00000641899 PMFBP1Q8TBY8 1022 aa22.31■■□□□ 1.16
SRRM4-204ENST00000641899 CFAP70Q5T0N1 1121 aa22.3■■□□□ 1.16
SRRM4-204ENST00000641899 BRWD3Q6RI45 1802 aa22.28■■□□□ 1.16
SRRM4-204ENST00000641899 PLCH1Q4KWH8 1693 aa22.27■■□□□ 1.16
SRRM4-204ENST00000641899 EN1Q05925 392 aaPredicted RBP22.27■■□□□ 1.16
SRRM4-204ENST00000641899 IFT172Q9UG01 1749 aa22.26■■□□□ 1.15
SRRM4-204ENST00000641899 SPATA31A5Q5VU36 1347 aa22.25■■□□□ 1.15
SRRM4-204ENST00000641899 SPATA31A7Q8IWB4 1347 aa22.25■■□□□ 1.15
SRRM4-204ENST00000641899 NGDNQ8NEJ9 315 aaKnown RBP22.24■■□□□ 1.15
SRRM4-204ENST00000641899 PRDM11Q9NQV5 511 aa22.24■■□□□ 1.15
SRRM4-204ENST00000641899 DLC1Q96QB1 1528 aa22.23■■□□□ 1.15
SRRM4-204ENST00000641899 PAK3O75914 559 aaPredicted RBP22.23■■□□□ 1.15
SRRM4-204ENST00000641899 R3HDM1Q15032 1099 aaKnown RBP22.23■■□□□ 1.15
SRRM4-204ENST00000641899 FAM196AQ6ZSG2 479 aa22.22■■□□□ 1.15
SRRM4-204ENST00000641899 DISP2A7MBM2 1401 aa22.22■■□□□ 1.15
SRRM4-204ENST00000641899 COL14A1Q05707 1796 aaKnown RBP22.2■■□□□ 1.14
SRRM4-204ENST00000641899 TRAK1Q9UPV9 953 aa22.19■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms