RNA–Protein interactions for RNA: ENST00000641009.1

LINC00339-211, long intergenic non-protein coding RNA 339, humanhuman

Gene LINC00339, Length 1,450 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-211ENST00000641009 LRPPRCP42704 1394 aaKnown RBP20.59■□□□□ 0.89
LINC00339-211ENST00000641009 WAPLQ7Z5K2 1190 aa20.59■□□□□ 0.89
LINC00339-211ENST00000641009 PNPLA6Q8IY17 1366 aa20.58■□□□□ 0.88
LINC00339-211ENST00000641009 MYOM2P54296 1465 aa20.57■□□□□ 0.88
LINC00339-211ENST00000641009 NRXN1Q9ULB1 1477 aa20.57■□□□□ 0.88
LINC00339-211ENST00000641009 YTHDC2Q9H6S0 1430 aaKnown RBP20.57■□□□□ 0.88
LINC00339-211ENST00000641009 FMN2Q9NZ56 1722 aa20.56■□□□□ 0.88
LINC00339-211ENST00000641009 ABCC11Q96J66 1382 aa20.56■□□□□ 0.88
LINC00339-211ENST00000641009 PLEKHH1Q9ULM0 1364 aa20.56■□□□□ 0.88
LINC00339-211ENST00000641009 RGPD8O14715 1765 aaPredicted RBP20.56■□□□□ 0.88
LINC00339-211ENST00000641009 ZNF772Q68DY9 489 aaPredicted RBP20.56■□□□□ 0.88
LINC00339-211ENST00000641009 SOS2Q07890 1332 aaPredicted RBP20.54■□□□□ 0.88
LINC00339-211ENST00000641009 C14orf93Q9H972 538 aaKnown RBP20.53■□□□□ 0.88
LINC00339-211ENST00000641009 ESCO1Q5FWF5 840 aa20.52■□□□□ 0.88
LINC00339-211ENST00000641009 CFAP70Q5T0N1 1121 aa20.52■□□□□ 0.88
LINC00339-211ENST00000641009 NUTM2FA1L443 756 aa20.51■□□□□ 0.87
LINC00339-211ENST00000641009 AFF2P51816 1311 aa20.51■□□□□ 0.87
LINC00339-211ENST00000641009 COL22A1Q8NFW1 1626 aaPredicted RBP20.51■□□□□ 0.87
LINC00339-211ENST00000641009 PXDNQ92626 1479 aa20.49■□□□□ 0.87
LINC00339-211ENST00000641009 C8orf37Q96NL8 207 aa20.49■□□□□ 0.87
LINC00339-211ENST00000641009 DHX57Q6P158 1386 aaKnown RBP20.48■□□□□ 0.87
LINC00339-211ENST00000641009 KIF1AQ12756 1690 aa20.48■□□□□ 0.87
LINC00339-211ENST00000641009 MARF1Q9Y4F3 1742 aaKnown RBP20.47■□□□□ 0.87
LINC00339-211ENST00000641009 NPHP3Q7Z494 1330 aa20.47■□□□□ 0.87
LINC00339-211ENST00000641009 ADAMTS2O95450 1211 aa20.47■□□□□ 0.87
LINC00339-211ENST00000641009 FOXO3O43524 673 aa20.46■□□□□ 0.87
LINC00339-211ENST00000641009 XPCQ01831 940 aaPredicted RBP20.46■□□□□ 0.87
LINC00339-211ENST00000641009 HRCP23327 699 aa20.45■□□□□ 0.86
LINC00339-211ENST00000641009 RXRBP28702 533 aa20.45■□□□□ 0.86
LINC00339-211ENST00000641009 SIRT1Q96EB6 747 aa20.45■□□□□ 0.86
LINC00339-211ENST00000641009 ADGRB1O14514 1584 aa20.45■□□□□ 0.86
LINC00339-211ENST00000641009 SAFB2Q14151 953 aaKnown RBP eCLIP20.43■□□□□ 0.86
LINC00339-211ENST00000641009 KDM2AQ9Y2K7 1162 aa20.43■□□□□ 0.86
LINC00339-211ENST00000641009 DLC1Q96QB1 1528 aa20.43■□□□□ 0.86
LINC00339-211ENST00000641009 DCAF11Q8TEB1 546 aa20.43■□□□□ 0.86
LINC00339-211ENST00000641009 PRAM1Q96QH2 718 aa20.43■□□□□ 0.86
LINC00339-211ENST00000641009 NGLY1Q96IV0 654 aa20.42■□□□□ 0.86
LINC00339-211ENST00000641009 CDK12Q9NYV4 1490 aaPredicted RBP20.41■□□□□ 0.86
LINC00339-211ENST00000641009 USP32Q8NFA0 1604 aa20.4■□□□□ 0.86
LINC00339-211ENST00000641009 QTRT2Q9H974 415 aaKnown RBP20.39■□□□□ 0.85
LINC00339-211ENST00000641009 ADGRB2O60241 1585 aa20.39■□□□□ 0.85
LINC00339-211ENST00000641009 POGKQ9P215 609 aa20.38■□□□□ 0.85
LINC00339-211ENST00000641009 TRAK1Q9UPV9 953 aa20.37■□□□□ 0.85
LINC00339-211ENST00000641009 ARHGEF28Q8N1W1 1705 aaKnown RBP20.37■□□□□ 0.85
LINC00339-211ENST00000641009 RGS12O14924 1447 aa20.36■□□□□ 0.85
LINC00339-211ENST00000641009 RBM6P78332 1123 aaKnown RBP20.35■□□□□ 0.85
LINC00339-211ENST00000641009 USP21Q9UK80 565 aa20.35■□□□□ 0.85
LINC00339-211ENST00000641009 PHF8Q9UPP1 1060 aa20.35■□□□□ 0.85
LINC00339-211ENST00000641009 KRT28Q7Z3Y7 464 aa20.34■□□□□ 0.85
LINC00339-211ENST00000641009 SPATA31A3Q5VYP0 1347 aa20.34■□□□□ 0.85
LINC00339-211ENST00000641009 FNBP4Q8N3X1 1017 aaPredicted RBP20.33■□□□□ 0.85
LINC00339-211ENST00000641009 UPF1Q92900 1129 aaKnown RBP eCLIP20.33■□□□□ 0.85
LINC00339-211ENST00000641009 STAC3Q96MF2 364 aa20.33■□□□□ 0.85
LINC00339-211ENST00000641009 HIRIP3Q9BW71 556 aaPredicted RBP20.33■□□□□ 0.85
LINC00339-211ENST00000641009 ABCA3Q99758 1704 aa20.32■□□□□ 0.84
LINC00339-211ENST00000641009 EP400Q96L91 3159 aa20.31■□□□□ 0.84
LINC00339-211ENST00000641009 MINK1Q8N4C8 1332 aaPredicted RBP20.31■□□□□ 0.84
LINC00339-211ENST00000641009 ANKARQ7Z5J8 1434 aa20.31■□□□□ 0.84
LINC00339-211ENST00000641009 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.3■□□□□ 0.84
LINC00339-211ENST00000641009 KIAA1210Q9ULL0 1709 aa20.3■□□□□ 0.84
LINC00339-211ENST00000641009 TNS3Q68CZ2 1445 aa20.3■□□□□ 0.84
LINC00339-211ENST00000641009 TRPC5Q9UL62 973 aaPredicted RBP20.3■□□□□ 0.84
LINC00339-211ENST00000641009 ATRNO75882 1429 aa20.29■□□□□ 0.84
LINC00339-211ENST00000641009 TRPM3Q9HCF6 1732 aaPredicted RBP20.29■□□□□ 0.84
LINC00339-211ENST00000641009 PMFBP1Q8TBY8 1022 aa20.29■□□□□ 0.84
LINC00339-211ENST00000641009 BCL9LQ86UU0 1499 aa20.29■□□□□ 0.84
LINC00339-211ENST00000641009 TULP4Q9NRJ4 1543 aa20.28■□□□□ 0.84
LINC00339-211ENST00000641009 ITSN1Q15811 1721 aa20.27■□□□□ 0.84
LINC00339-211ENST00000641009 PSME1Q06323 249 aa20.27■□□□□ 0.84
LINC00339-211ENST00000641009 PLCH1Q4KWH8 1693 aa20.26■□□□□ 0.83
LINC00339-211ENST00000641009 SBNO1A3KN83 1393 aa20.25■□□□□ 0.83
LINC00339-211ENST00000641009 PRR36Q9H6K5 1346 aa20.25■□□□□ 0.83
LINC00339-211ENST00000641009 PLEKHG5O94827 1062 aa20.25■□□□□ 0.83
LINC00339-211ENST00000641009 ALS2Q96Q42 1657 aa20.25■□□□□ 0.83
LINC00339-211ENST00000641009 WASLO00401 505 aaPredicted RBP20.24■□□□□ 0.83
LINC00339-211ENST00000641009 LMOD2Q6P5Q4 547 aa20.24■□□□□ 0.83
LINC00339-211ENST00000641009 CABLES1Q8TDN4 633 aa20.24■□□□□ 0.83
LINC00339-211ENST00000641009 EIF3AQ14152 1382 aaKnown RBP20.24■□□□□ 0.83
LINC00339-211ENST00000641009 SLIT2O94813 1529 aa20.23■□□□□ 0.83
LINC00339-211ENST00000641009 NWD2Q9ULI1 1742 aa20.22■□□□□ 0.83
LINC00339-211ENST00000641009 HAP1P54257 671 aaPredicted RBP20.22■□□□□ 0.83
LINC00339-211ENST00000641009 ARHGEF10O15013 1369 aa20.21■□□□□ 0.83
LINC00339-211ENST00000641009 GLI3P10071 1580 aa20.2■□□□□ 0.82
LINC00339-211ENST00000641009 ATP7BP35670 1465 aa20.2■□□□□ 0.82
LINC00339-211ENST00000641009 CRYBG1Q9Y4K1 1723 aa20.2■□□□□ 0.82
LINC00339-211ENST00000641009 BRWD3Q6RI45 1802 aa20.19■□□□□ 0.82
LINC00339-211ENST00000641009 UNC5CLQ8IV45 518 aa20.19■□□□□ 0.82
LINC00339-211ENST00000641009 TOPAZ1Q8N9V7 1692 aa20.19■□□□□ 0.82
LINC00339-211ENST00000641009 NBPF1Q3BBV0 1214 aa20.18■□□□□ 0.82
LINC00339-211ENST00000641009 GJD4Q96KN9 370 aaPredicted RBP20.18■□□□□ 0.82
LINC00339-211ENST00000641009 GPRASP1Q5JY77 1395 aa20.18■□□□□ 0.82
LINC00339-211ENST00000641009 ATAD2Q6PL18 1390 aa20.17■□□□□ 0.82
LINC00339-211ENST00000641009 RALGAPBQ86X10 1494 aa20.17■□□□□ 0.82
LINC00339-211ENST00000641009 NGDNQ8NEJ9 315 aaKnown RBP20.16■□□□□ 0.82
LINC00339-211ENST00000641009 NRAPQ86VF7 1730 aa20.16■□□□□ 0.82
LINC00339-211ENST00000641009 QRICH2Q9H0J4 1663 aa20.15■□□□□ 0.82
LINC00339-211ENST00000641009 NUDT16Q96DE0 195 aaKnown RBP20.15■□□□□ 0.82
LINC00339-211ENST00000641009 CDK19Q9BWU1 502 aa20.14■□□□□ 0.81
LINC00339-211ENST00000641009 COL14A1Q05707 1796 aaKnown RBP20.12■□□□□ 0.81
LINC00339-211ENST00000641009 PAK3O75914 559 aaPredicted RBP20.12■□□□□ 0.81
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