RNA–Protein interactions for RNA: ENST00000640501.1

PNKP-231, Transcript of polynucleotide kinase 3'-phosphatase, human

TSL 5

Gene PNKP, Length 151 nt, Biotype non stop decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PNKP-231	ENST00000640501	NSD3	Q9BZ95	1437 aa		11.04	□□□□□ -0.64
PNKP-231	ENST00000640501	SRPK2	P78362	688 aa	Known RBP	11.04	□□□□□ -0.64
PNKP-231	ENST00000640501	MORC1	Q86VD1	984 aa		11.04	□□□□□ -0.64
PNKP-231	ENST00000640501	CFAP53	Q96M91	514 aa		11.04	□□□□□ -0.64
PNKP-231	ENST00000640501	UBR1	Q8IWV7	1749 aa		11.04	□□□□□ -0.64
PNKP-231	ENST00000640501	FER1L4	A9Z1Z3	1794 aa		11.03	□□□□□ -0.64
PNKP-231	ENST00000640501	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	11.03	□□□□□ -0.64
PNKP-231	ENST00000640501	STK26	Q9P289	416 aa		11.03	□□□□□ -0.64
PNKP-231	ENST00000640501	SIRT1	Q96EB6	747 aa		11.02	□□□□□ -0.65
PNKP-231	ENST00000640501	PRAM1	Q96QH2	718 aa		11.02	□□□□□ -0.65
PNKP-231	ENST00000640501	PPP4R2	Q9NY27	417 aa		11.02	□□□□□ -0.65
PNKP-231	ENST00000640501	POLR3A	O14802	1390 aa	Predicted RBP	11.02	□□□□□ -0.65
PNKP-231	ENST00000640501	ABCC11	Q96J66	1382 aa		11.02	□□□□□ -0.65
PNKP-231	ENST00000640501	SETD1A	O15047	1707 aa	Known RBP	11.01	□□□□□ -0.65
PNKP-231	ENST00000640501	TRH	P20396	242 aa	Predicted RBP	11.01	□□□□□ -0.65
PNKP-231	ENST00000640501	BCAN	Q96GW7	911 aa		11.01	□□□□□ -0.65
PNKP-231	ENST00000640501	EID1	Q9Y6B2	187 aa		11.01	□□□□□ -0.65
PNKP-231	ENST00000640501	ANKRD26	Q9UPS8	1709 aa		11.01	□□□□□ -0.65
PNKP-231	ENST00000640501	FAM135B	Q49AJ0	1406 aa		11.01	□□□□□ -0.65
PNKP-231	ENST00000640501	TMEM2	Q9UHN6	1383 aa		11	□□□□□ -0.65
PNKP-231	ENST00000640501	MED14	O60244	1454 aa		11	□□□□□ -0.65
PNKP-231	ENST00000640501	C3	P01024	1663 aa		10.99	□□□□□ -0.65
PNKP-231	ENST00000640501	CARD14	Q9BXL6	1004 aa		10.99	□□□□□ -0.65
PNKP-231	ENST00000640501	SLC12A5	Q9H2X9	1139 aa		10.99	□□□□□ -0.65
PNKP-231	ENST00000640501	ATP7B	P35670	1465 aa		10.99	□□□□□ -0.65
PNKP-231	ENST00000640501	CABP2	Q9NPB3	220 aa		10.98	□□□□□ -0.65
PNKP-231	ENST00000640501	ADAMTS8	Q9UP79	889 aa		10.98	□□□□□ -0.65
PNKP-231	ENST00000640501	TECPR2	O15040	1411 aa		10.98	□□□□□ -0.65
PNKP-231	ENST00000640501	CPS1	P31327	1500 aa		10.98	□□□□□ -0.65
PNKP-231	ENST00000640501	DIP2A	Q14689	1571 aa		10.98	□□□□□ -0.65
PNKP-231	ENST00000640501	NRXN3	Q9Y4C0	1643 aa		10.98	□□□□□ -0.65
PNKP-231	ENST00000640501	SAFB2	Q14151	953 aa	Known RBP eCLIP	10.97	□□□□□ -0.65
PNKP-231	ENST00000640501	MINK1	Q8N4C8	1332 aa	Predicted RBP	10.97	□□□□□ -0.65
PNKP-231	ENST00000640501	PLEKHG1	Q9ULL1	1385 aa		10.97	□□□□□ -0.65
PNKP-231	ENST00000640501	KIF20B	Q96Q89	1820 aa		10.97	□□□□□ -0.65
PNKP-231	ENST00000640501	RNF123	Q5XPI4	1314 aa		10.96	□□□□□ -0.65
PNKP-231	ENST00000640501	THEMIS	Q8N1K5	641 aa	Predicted RBP	10.96	□□□□□ -0.65
PNKP-231	ENST00000640501	CDK19	Q9BWU1	502 aa		10.96	□□□□□ -0.65
PNKP-231	ENST00000640501	PNN	Q9H307	717 aa	Known RBP	10.96	□□□□□ -0.65
PNKP-231	ENST00000640501	RCAN3	Q9UKA8	241 aa		10.96	□□□□□ -0.65
PNKP-231	ENST00000640501	SLIT1	O75093	1534 aa		10.95	□□□□□ -0.66
PNKP-231	ENST00000640501		A0A1W2PP64	1363 aa		10.95	□□□□□ -0.66
PNKP-231	ENST00000640501	GOLGA2	Q08379	1002 aa		10.95	□□□□□ -0.66
PNKP-231	ENST00000640501	NCBP3	Q53F19	620 aa	Known RBP	10.95	□□□□□ -0.66
PNKP-231	ENST00000640501	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	10.95	□□□□□ -0.66
PNKP-231	ENST00000640501	ITSN1	Q15811	1721 aa		10.92	□□□□□ -0.66
PNKP-231	ENST00000640501	ADGRB2	O60241	1585 aa		10.92	□□□□□ -0.66
PNKP-231	ENST00000640501	WASL	O00401	505 aa	Predicted RBP	10.92	□□□□□ -0.66
PNKP-231	ENST00000640501	RUNDC1	Q96C34	613 aa		10.92	□□□□□ -0.66
PNKP-231	ENST00000640501	SALL2	Q9Y467	1007 aa	Predicted RBP	10.92	□□□□□ -0.66
PNKP-231	ENST00000640501	ARHGAP23	Q9P227	1491 aa		10.92	□□□□□ -0.66
PNKP-231	ENST00000640501		E9PSI1	815 aa		10.91	□□□□□ -0.66
PNKP-231	ENST00000640501	NEFM	P07197	916 aa		10.91	□□□□□ -0.66
PNKP-231	ENST00000640501	RRP1	P56182	461 aa	Known RBP	10.91	□□□□□ -0.66
PNKP-231	ENST00000640501	TXNDC2	Q86VQ3	553 aa		10.91	□□□□□ -0.66
PNKP-231	ENST00000640501	ZNF692	Q9BU19	519 aa	Predicted RBP	10.91	□□□□□ -0.66
PNKP-231	ENST00000640501	SHPRH	Q149N8	1683 aa		10.91	□□□□□ -0.66
PNKP-231	ENST00000640501	EDC4	Q6P2E9	1401 aa	Known RBP	10.91	□□□□□ -0.66
PNKP-231	ENST00000640501	MET	P08581	1390 aa		10.9	□□□□□ -0.66
PNKP-231	ENST00000640501	MTHFS	P49914	203 aa		10.9	□□□□□ -0.66
PNKP-231	ENST00000640501	IRX6	P78412	446 aa	Predicted RBP	10.9	□□□□□ -0.66
PNKP-231	ENST00000640501	CABP1	Q9NZU7	370 aa		10.9	□□□□□ -0.66
PNKP-231	ENST00000640501	PPIP5K1	Q6PFW1	1433 aa		10.9	□□□□□ -0.66
PNKP-231	ENST00000640501	CDC42BPG	Q6DT37	1551 aa		10.9	□□□□□ -0.67
PNKP-231	ENST00000640501	CCDC136	Q96JN2	1154 aa		10.89	□□□□□ -0.67
PNKP-231	ENST00000640501	SENP3	Q9H4L4	574 aa	Predicted RBP	10.89	□□□□□ -0.67
PNKP-231	ENST00000640501	TBX22	Q9Y458	520 aa		10.89	□□□□□ -0.67
PNKP-231	ENST00000640501	CCDC61	Q9Y6R9	512 aa		10.89	□□□□□ -0.67
PNKP-231	ENST00000640501	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	10.89	□□□□□ -0.67
PNKP-231	ENST00000640501	PIK3R4	Q99570	1358 aa		10.89	□□□□□ -0.67
PNKP-231	ENST00000640501	CD163L1	Q9NR16	1453 aa		10.88	□□□□□ -0.67
PNKP-231	ENST00000640501	TNNT2	P45379	298 aa	Predicted RBP	10.88	□□□□□ -0.67
PNKP-231	ENST00000640501	PTCH1	Q13635	1447 aa		10.88	□□□□□ -0.67
PNKP-231	ENST00000640501	ADAMTS13	Q76LX8	1427 aa		10.88	□□□□□ -0.67
PNKP-231	ENST00000640501	MON2	Q7Z3U7	1717 aa		10.88	□□□□□ -0.67
PNKP-231	ENST00000640501	WAPL	Q7Z5K2	1190 aa		10.88	□□□□□ -0.67
PNKP-231	ENST00000640501	AKAP12	Q02952	1782 aa		10.88	□□□□□ -0.67
PNKP-231	ENST00000640501	NKTR	P30414	1462 aa	Known RBP	10.87	□□□□□ -0.67
PNKP-231	ENST00000640501	ZNF521	Q96K83	1311 aa		10.87	□□□□□ -0.67
PNKP-231	ENST00000640501	MAPK8IP3	Q9UPT6	1336 aa		10.87	□□□□□ -0.67
PNKP-231	ENST00000640501	APAF1	O14727	1248 aa		10.87	□□□□□ -0.67
PNKP-231	ENST00000640501	CCDC27	Q2M243	656 aa		10.87	□□□□□ -0.67
PNKP-231	ENST00000640501	NUDT16	Q96DE0	195 aa	Known RBP	10.87	□□□□□ -0.67
PNKP-231	ENST00000640501	ZNF142	P52746	1687 aa	Predicted RBP	10.87	□□□□□ -0.67
PNKP-231	ENST00000640501	RIMS1	Q86UR5	1692 aa	Known RBP	10.87	□□□□□ -0.67
PNKP-231	ENST00000640501	CPSF1	Q10570	1443 aa	Known RBP	10.86	□□□□□ -0.67
PNKP-231	ENST00000640501	FYB1	O15117	783 aa		10.86	□□□□□ -0.67
PNKP-231	ENST00000640501	SLFN5	Q08AF3	891 aa		10.86	□□□□□ -0.67
PNKP-231	ENST00000640501	WDR63	Q8IWG1	891 aa		10.86	□□□□□ -0.67
PNKP-231	ENST00000640501	CCDC146	Q8IYE0	955 aa		10.86	□□□□□ -0.67
PNKP-231	ENST00000640501	GGNBP2	Q9H3C7	697 aa		10.86	□□□□□ -0.67
PNKP-231	ENST00000640501	PLEKHH1	Q9ULM0	1364 aa		10.86	□□□□□ -0.67
PNKP-231	ENST00000640501	DIAPH1	O60610	1272 aa	Known RBP	10.85	□□□□□ -0.67
PNKP-231	ENST00000640501	U2AF1L5	P0DN76	240 aa	Predicted RBP	10.85	□□□□□ -0.67
PNKP-231	ENST00000640501	CEBPA	P49715	358 aa	Predicted RBP	10.85	□□□□□ -0.67
PNKP-231	ENST00000640501	U2AF1	Q01081	240 aa	Known RBP eCLIP	10.85	□□□□□ -0.67
PNKP-231	ENST00000640501	COG3	Q96JB2	828 aa		10.85	□□□□□ -0.67
PNKP-231	ENST00000640501	MYH16	Q9H6N6	1097 aa		10.85	□□□□□ -0.67
PNKP-231	ENST00000640501	TOPAZ1	Q8N9V7	1692 aa		10.85	□□□□□ -0.67
PNKP-231	ENST00000640501	DUSP27	Q5VZP5	1158 aa		10.84	□□□□□ -0.67

Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms