RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 ROBO2Q9HCK4 1378 aa25.33■■□□□ 1.65
CLN3-254ENST00000637050 NPHP4O75161 1426 aaPredicted RBP25.33■■□□□ 1.65
CLN3-254ENST00000637050 PER1O15534 1290 aaPredicted RBP25.32■■□□□ 1.64
CLN3-254ENST00000637050 XRN1Q8IZH2 1706 aaKnown RBP25.31■■□□□ 1.64
CLN3-254ENST00000637050 PRKRIP1Q9H875 184 aaPredicted RBP25.31■■□□□ 1.64
CLN3-254ENST00000637050 AMOTL2Q9Y2J4 779 aa25.31■■□□□ 1.64
CLN3-254ENST00000637050 PTCH1Q13635 1447 aa25.3■■□□□ 1.64
CLN3-254ENST00000637050 CCER2I3L3R5 266 aa25.29■■□□□ 1.64
CLN3-254ENST00000637050 NCKAP5LQ9HCH0 1330 aa25.28■■□□□ 1.64
CLN3-254ENST00000637050 CABP2Q9NPB3 220 aa25.26■■□□□ 1.63
CLN3-254ENST00000637050 CDK19Q9BWU1 502 aa25.25■■□□□ 1.63
CLN3-254ENST00000637050 ATAD2Q6PL18 1390 aa25.25■■□□□ 1.63
CLN3-254ENST00000637050 LMTK3Q96Q04 1460 aa25.25■■□□□ 1.63
CLN3-254ENST00000637050 CHD2O14647 1828 aaKnown RBP25.24■■□□□ 1.63
CLN3-254ENST00000637050 SRPK2P78362 688 aaKnown RBP25.24■■□□□ 1.63
CLN3-254ENST00000637050 ADGRB2O60241 1585 aa25.23■■□□□ 1.63
CLN3-254ENST00000637050 SIPA1L2Q9P2F8 1722 aaPredicted RBP25.23■■□□□ 1.63
CLN3-254ENST00000637050 NINLQ9Y2I6 1382 aa25.23■■□□□ 1.63
CLN3-254ENST00000637050 KTN1Q86UP2 1357 aaKnown RBP25.21■■□□□ 1.63
CLN3-254ENST00000637050 WASLO00401 505 aaPredicted RBP25.21■■□□□ 1.63
CLN3-254ENST00000637050 SLC12A5Q9H2X9 1139 aa25.21■■□□□ 1.63
CLN3-254ENST00000637050 KCNA6P17658 529 aa25.2■■□□□ 1.63
CLN3-254ENST00000637050 TMC1Q8TDI8 760 aa25.2■■□□□ 1.62
CLN3-254ENST00000637050 KNSTRNQ9Y448 316 aa25.19■■□□□ 1.62
CLN3-254ENST00000637050 HSPA2P54652 639 aa25.18■■□□□ 1.62
CLN3-254ENST00000637050 RALBP1Q15311 655 aa25.17■■□□□ 1.62
CLN3-254ENST00000637050 CARD14Q9BXL6 1004 aa25.17■■□□□ 1.62
CLN3-254ENST00000637050 ANKRD36BQ8N2N9 1353 aa25.16■■□□□ 1.62
CLN3-254ENST00000637050 PARD3Q8TEW0 1356 aa25.16■■□□□ 1.62
CLN3-254ENST00000637050 NPC1L1Q9UHC9 1359 aa25.16■■□□□ 1.62
CLN3-254ENST00000637050 AMER1Q5JTC6 1135 aaPredicted RBP25.15■■□□□ 1.62
CLN3-254ENST00000637050 NWD1Q149M9 1564 aa25.15■■□□□ 1.62
CLN3-254ENST00000637050 CNGB1Q14028 1251 aaPredicted RBP25.13■■□□□ 1.61
CLN3-254ENST00000637050 CD163L1Q9NR16 1453 aa25.11■■□□□ 1.61
CLN3-254ENST00000637050 CC2D1BQ5T0F9 858 aaKnown RBP25.1■■□□□ 1.61
CLN3-254ENST00000637050 NSD3Q9BZ95 1437 aa25.1■■□□□ 1.61
CLN3-254ENST00000637050 USP32Q8NFA0 1604 aa25.1■■□□□ 1.61
CLN3-254ENST00000637050 STRCQ7RTU9 1775 aa25.09■■□□□ 1.61
CLN3-254ENST00000637050 NUDT16Q96DE0 195 aaKnown RBP25.09■■□□□ 1.61
CLN3-254ENST00000637050 ATP7BP35670 1465 aa25.09■■□□□ 1.61
CLN3-254ENST00000637050 A0A1W2PP64 1363 aa25.09■■□□□ 1.61
CLN3-254ENST00000637050 TERF2IPQ9NYB0 399 aa25.08■■□□□ 1.61
CLN3-254ENST00000637050 CABP1Q9NZU7 370 aa25.08■■□□□ 1.61
CLN3-254ENST00000637050 MYBBP1AQ9BQG0 1328 aaKnown RBP25.08■■□□□ 1.61
CLN3-254ENST00000637050 CCDC184Q52MB2 194 aa25.07■■□□□ 1.6
CLN3-254ENST00000637050 PRR36Q9H6K5 1346 aa25.07■■□□□ 1.6
CLN3-254ENST00000637050 CCDC61Q9Y6R9 512 aa25.06■■□□□ 1.6
CLN3-254ENST00000637050 PPIP5K1Q6PFW1 1433 aa25.06■■□□□ 1.6
CLN3-254ENST00000637050 NKTRP30414 1462 aaKnown RBP25.04■■□□□ 1.6
CLN3-254ENST00000637050 NALCNQ8IZF0 1738 aa25.04■■□□□ 1.6
CLN3-254ENST00000637050 TOPAZ1Q8N9V7 1692 aa25.04■■□□□ 1.6
CLN3-254ENST00000637050 HDGFL2Q7Z4V5 671 aaPredicted RBP25.04■■□□□ 1.6
CLN3-254ENST00000637050 MRS2Q9HD23 443 aa25.03■■□□□ 1.6
CLN3-254ENST00000637050 CDC42BPGQ6DT37 1551 aa25.02■■□□□ 1.6
CLN3-254ENST00000637050 CPSF1Q10570 1443 aaKnown RBP25.02■■□□□ 1.6
CLN3-254ENST00000637050 CGNL1Q0VF96 1302 aa25.01■■□□□ 1.59
CLN3-254ENST00000637050 ADGRL3Q9HAR2 1447 aa25.01■■□□□ 1.59
CLN3-254ENST00000637050 BRD4O60885 1362 aaPredicted RBP25.01■■□□□ 1.59
CLN3-254ENST00000637050 YTHDC1Q96MU7 727 aaKnown RBP25.01■■□□□ 1.59
CLN3-254ENST00000637050 NLRP13Q86W25 1043 aa25■■□□□ 1.59
CLN3-254ENST00000637050 FMN2Q9NZ56 1722 aa25■■□□□ 1.59
CLN3-254ENST00000637050 ANKARQ7Z5J8 1434 aa24.99■■□□□ 1.59
CLN3-254ENST00000637050 NSD2O96028 1365 aa24.99■■□□□ 1.59
CLN3-254ENST00000637050 STRCP1A6NGW2 1772 aa24.98■■□□□ 1.59
CLN3-254ENST00000637050 PLEKHG3A1L390 1219 aa24.97■■□□□ 1.59
CLN3-254ENST00000637050 ITSN1Q15811 1721 aa24.96■■□□□ 1.59
CLN3-254ENST00000637050 AKAP12Q02952 1782 aa24.96■■□□□ 1.59
CLN3-254ENST00000637050 PROSER2Q86WR7 435 aaPredicted RBP24.96■■□□□ 1.59
CLN3-254ENST00000637050 RBM33Q96EV2 1170 aaKnown RBP24.96■■□□□ 1.59
CLN3-254ENST00000637050 NUTM2FA1L443 756 aa24.95■■□□□ 1.58
CLN3-254ENST00000637050 MON2Q7Z3U7 1717 aa24.94■■□□□ 1.58
CLN3-254ENST00000637050 PPP2R1AP30153 589 aa24.94■■□□□ 1.58
CLN3-254ENST00000637050 EDC4Q6P2E9 1401 aaKnown RBP24.93■■□□□ 1.58
CLN3-254ENST00000637050 ZNF692Q9BU19 519 aaPredicted RBP24.93■■□□□ 1.58
CLN3-254ENST00000637050 RGPD8O14715 1765 aaPredicted RBP24.92■■□□□ 1.58
CLN3-254ENST00000637050 NCOA3Q9Y6Q9 1424 aa24.91■■□□□ 1.58
CLN3-254ENST00000637050 PELP1Q8IZL8 1130 aaKnown RBP24.91■■□□□ 1.58
CLN3-254ENST00000637050 FYB1O15117 783 aa24.9■■□□□ 1.58
CLN3-254ENST00000637050 MORC1Q86VD1 984 aa24.9■■□□□ 1.58
CLN3-254ENST00000637050 ACEP12821 1306 aa24.9■■□□□ 1.58
CLN3-254ENST00000637050 ANKRD26Q9UPS8 1709 aa24.9■■□□□ 1.58
CLN3-254ENST00000637050 KIF20BQ96Q89 1820 aa24.89■■□□□ 1.57
CLN3-254ENST00000637050 POLR3AO14802 1390 aaPredicted RBP24.89■■□□□ 1.57
CLN3-254ENST00000637050 C14orf37Q86TY3 774 aa24.88■■□□□ 1.57
CLN3-254ENST00000637050 PNISRQ8TF01 805 aaKnown RBP24.88■■□□□ 1.57
CLN3-254ENST00000637050 TMEM94Q12767 1356 aa24.87■■□□□ 1.57
CLN3-254ENST00000637050 NRKQ7Z2Y5 1582 aa24.86■■□□□ 1.57
CLN3-254ENST00000637050 FAM9BQ8IZU0 186 aa24.85■■□□□ 1.57
CLN3-254ENST00000637050 GGNBP2Q9H3C7 697 aa24.85■■□□□ 1.57
CLN3-254ENST00000637050 C19orf44Q9H6X5 657 aa24.85■■□□□ 1.57
CLN3-254ENST00000637050 DMRT2Q9Y5R5 561 aa24.85■■□□□ 1.57
CLN3-254ENST00000637050 USP6P35125 1406 aa24.85■■□□□ 1.57
CLN3-254ENST00000637050 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.84■■□□□ 1.57
CLN3-254ENST00000637050 PMFBP1Q8TBY8 1022 aa24.83■■□□□ 1.57
CLN3-254ENST00000637050 DCCP43146 1447 aa24.82■■□□□ 1.56
CLN3-254ENST00000637050 SSH2Q76I76 1423 aa24.82■■□□□ 1.56
CLN3-254ENST00000637050 ZNF335Q9H4Z2 1342 aaPredicted RBP24.81■■□□□ 1.56
CLN3-254ENST00000637050 NGDNQ8NEJ9 315 aaKnown RBP24.81■■□□□ 1.56
CLN3-254ENST00000637050 TTC21BQ7Z4L5 1316 aa24.8■■□□□ 1.56
CLN3-254ENST00000637050 CENPBP07199 599 aaPredicted RBP24.8■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms