RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 RALBP1Q15311 655 aa14.48□□□□□ -0.09
CLN3-248ENST00000636355 TXNDC2Q86VQ3 553 aa14.48□□□□□ -0.09
CLN3-248ENST00000636355 POLR3GLQ9BT43 218 aa14.48□□□□□ -0.09
CLN3-248ENST00000636355 TBX22Q9Y458 520 aa14.48□□□□□ -0.09
CLN3-248ENST00000636355 ANKRD26Q9UPS8 1709 aa14.48□□□□□ -0.09
CLN3-248ENST00000636355 TOPAZ1Q8N9V7 1692 aa14.48□□□□□ -0.09
CLN3-248ENST00000636355 NWD1Q149M9 1564 aa14.47□□□□□ -0.09
CLN3-248ENST00000636355 ITSN1Q15811 1721 aa14.47□□□□□ -0.09
CLN3-248ENST00000636355 ATP7BP35670 1465 aa14.47□□□□□ -0.09
CLN3-248ENST00000636355 PER1O15534 1290 aaPredicted RBP14.47□□□□□ -0.09
CLN3-248ENST00000636355 LTKP29376 864 aa14.47□□□□□ -0.09
CLN3-248ENST00000636355 ANKRD36BQ8N2N9 1353 aa14.46□□□□□ -0.1
CLN3-248ENST00000636355 CENPBP07199 599 aaPredicted RBP14.45□□□□□ -0.1
CLN3-248ENST00000636355 PRAM1Q96QH2 718 aa14.45□□□□□ -0.1
CLN3-248ENST00000636355 BRD4O60885 1362 aaPredicted RBP14.45□□□□□ -0.1
CLN3-248ENST00000636355 NSD2O96028 1365 aa14.45□□□□□ -0.1
CLN3-248ENST00000636355 POGKQ9P215 609 aa14.44□□□□□ -0.1
CLN3-248ENST00000636355 MYBBP1AQ9BQG0 1328 aaKnown RBP14.43□□□□□ -0.1
CLN3-248ENST00000636355 MON2Q7Z3U7 1717 aa14.43□□□□□ -0.1
CLN3-248ENST00000636355 KIF20BQ96Q89 1820 aa14.43□□□□□ -0.1
CLN3-248ENST00000636355 CDC42BPGQ6DT37 1551 aa14.43□□□□□ -0.1
CLN3-248ENST00000636355 AKAP12Q02952 1782 aa14.42□□□□□ -0.1
CLN3-248ENST00000636355 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.42□□□□□ -0.1
CLN3-248ENST00000636355 ANKLE2Q86XL3 938 aa14.42□□□□□ -0.1
CLN3-248ENST00000636355 PANK3Q9H999 370 aa14.42□□□□□ -0.1
CLN3-248ENST00000636355 STK26Q9P289 416 aa14.42□□□□□ -0.1
CLN3-248ENST00000636355 KNSTRNQ9Y448 316 aa14.42□□□□□ -0.1
CLN3-248ENST00000636355 NPHP4O75161 1426 aaPredicted RBP14.41□□□□□ -0.1
CLN3-248ENST00000636355 PTPRUQ92729 1446 aa14.41□□□□□ -0.1
CLN3-248ENST00000636355 CERKQ8TCT0 537 aa14.41□□□□□ -0.1
CLN3-248ENST00000636355 ROBO2Q9HCK4 1378 aa14.41□□□□□ -0.1
CLN3-248ENST00000636355 NKTRP30414 1462 aaKnown RBP14.4□□□□□ -0.1
CLN3-248ENST00000636355 INSRP06213 1382 aa14.4□□□□□ -0.1
CLN3-248ENST00000636355 NLRP13Q86W25 1043 aa14.39□□□□□ -0.11
CLN3-248ENST00000636355 BCANQ96GW7 911 aa14.39□□□□□ -0.11
CLN3-248ENST00000636355 NSD3Q9BZ95 1437 aa14.39□□□□□ -0.11
CLN3-248ENST00000636355 NALCNQ8IZF0 1738 aa14.38□□□□□ -0.11
CLN3-248ENST00000636355 FMN2Q9NZ56 1722 aa14.38□□□□□ -0.11
CLN3-248ENST00000636355 PLEKHH1Q9ULM0 1364 aa14.38□□□□□ -0.11
CLN3-248ENST00000636355 AMER1Q5JTC6 1135 aaPredicted RBP14.38□□□□□ -0.11
CLN3-248ENST00000636355 NRKQ7Z2Y5 1582 aa14.38□□□□□ -0.11
CLN3-248ENST00000636355 CD163L1Q9NR16 1453 aa14.38□□□□□ -0.11
CLN3-248ENST00000636355 ANKARQ7Z5J8 1434 aa14.37□□□□□ -0.11
CLN3-248ENST00000636355 MINK1Q8N4C8 1332 aaPredicted RBP14.37□□□□□ -0.11
CLN3-248ENST00000636355 SRPK2P78362 688 aaKnown RBP14.36□□□□□ -0.11
CLN3-248ENST00000636355 A0A1W2PP64 1363 aa14.35□□□□□ -0.11
CLN3-248ENST00000636355 PLPPR3Q6T4P5 718 aa14.35□□□□□ -0.11
CLN3-248ENST00000636355 MRS2Q9HD23 443 aa14.35□□□□□ -0.11
CLN3-248ENST00000636355 TERF2IPQ9NYB0 399 aa14.35□□□□□ -0.11
CLN3-248ENST00000636355 CGNL1Q0VF96 1302 aa14.35□□□□□ -0.11
CLN3-248ENST00000636355 WASLO00401 505 aaPredicted RBP14.34□□□□□ -0.11
CLN3-248ENST00000636355 CPSF1Q10570 1443 aaKnown RBP14.33□□□□□ -0.11
CLN3-248ENST00000636355 EDC4Q6P2E9 1401 aaKnown RBP14.33□□□□□ -0.11
CLN3-248ENST00000636355 SAFB2Q14151 953 aaKnown RBP eCLIP14.33□□□□□ -0.12
CLN3-248ENST00000636355 SLC26A8Q96RN1 970 aa14.33□□□□□ -0.12
CLN3-248ENST00000636355 CDK19Q9BWU1 502 aa14.33□□□□□ -0.12
CLN3-248ENST00000636355 ADGRL3Q9HAR2 1447 aa14.32□□□□□ -0.12
CLN3-248ENST00000636355 HSPA2P54652 639 aa14.32□□□□□ -0.12
CLN3-248ENST00000636355 WAPLQ7Z5K2 1190 aa14.32□□□□□ -0.12
CLN3-248ENST00000636355 AMOTL2Q9Y2J4 779 aa14.32□□□□□ -0.12
CLN3-248ENST00000636355 PPIP5K1Q6PFW1 1433 aa14.32□□□□□ -0.12
CLN3-248ENST00000636355 USP54Q70EL1 1684 aa14.31□□□□□ -0.12
CLN3-248ENST00000636355 CABP2Q9NPB3 220 aa14.31□□□□□ -0.12
CLN3-248ENST00000636355 LRRC7Q96NW7 1537 aa14.31□□□□□ -0.12
CLN3-248ENST00000636355 HDGFL2Q7Z4V5 671 aaPredicted RBP14.3□□□□□ -0.12
CLN3-248ENST00000636355 TMC1Q8TDI8 760 aa14.3□□□□□ -0.12
CLN3-248ENST00000636355 YTHDC1Q96MU7 727 aaKnown RBP14.3□□□□□ -0.12
CLN3-248ENST00000636355 CARD14Q9BXL6 1004 aa14.3□□□□□ -0.12
CLN3-248ENST00000636355 SLC12A5Q9H2X9 1139 aa14.3□□□□□ -0.12
CLN3-248ENST00000636355 NCOA3Q9Y6Q9 1424 aa14.29□□□□□ -0.12
CLN3-248ENST00000636355 STRCQ7RTU9 1775 aa14.29□□□□□ -0.12
CLN3-248ENST00000636355 CC2D1BQ5T0F9 858 aaKnown RBP14.28□□□□□ -0.12
CLN3-248ENST00000636355 SENP3Q9H4L4 574 aaPredicted RBP14.28□□□□□ -0.12
CLN3-248ENST00000636355 CCDC61Q9Y6R9 512 aa14.28□□□□□ -0.12
CLN3-248ENST00000636355 DCCP43146 1447 aa14.27□□□□□ -0.12
CLN3-248ENST00000636355 KIF1AQ12756 1690 aa14.26□□□□□ -0.13
CLN3-248ENST00000636355 BLMP54132 1417 aaPredicted RBP14.26□□□□□ -0.13
CLN3-248ENST00000636355 KCNA6P17658 529 aa14.26□□□□□ -0.13
CLN3-248ENST00000636355 RGPD8O14715 1765 aaPredicted RBP14.26□□□□□ -0.13
CLN3-248ENST00000636355 SHPRHQ149N8 1683 aa14.26□□□□□ -0.13
CLN3-248ENST00000636355 POLR3AO14802 1390 aaPredicted RBP14.25□□□□□ -0.13
CLN3-248ENST00000636355 PPP2R1AP30153 589 aa14.25□□□□□ -0.13
CLN3-248ENST00000636355 PNISRQ8TF01 805 aaKnown RBP14.25□□□□□ -0.13
CLN3-248ENST00000636355 NUDT16Q96DE0 195 aaKnown RBP14.25□□□□□ -0.13
CLN3-248ENST00000636355 SCAF1Q9H7N4 1312 aaKnown RBP14.24□□□□□ -0.13
CLN3-248ENST00000636355 CCDC184Q52MB2 194 aa14.24□□□□□ -0.13
CLN3-248ENST00000636355 ZNF692Q9BU19 519 aaPredicted RBP14.24□□□□□ -0.13
CLN3-248ENST00000636355 USP6P35125 1406 aa14.24□□□□□ -0.13
CLN3-248ENST00000636355 ZBED9Q6R2W3 1325 aa14.23□□□□□ -0.13
CLN3-248ENST00000636355 PRR36Q9H6K5 1346 aa14.23□□□□□ -0.13
CLN3-248ENST00000636355 PLEKHG3A1L390 1219 aa14.23□□□□□ -0.13
CLN3-248ENST00000636355 STRCP1A6NGW2 1772 aa14.23□□□□□ -0.13
CLN3-248ENST00000636355 SMG6Q86US8 1419 aaKnown RBP14.23□□□□□ -0.13
CLN3-248ENST00000636355 CABP1Q9NZU7 370 aa14.22□□□□□ -0.13
CLN3-248ENST00000636355 MORC1Q86VD1 984 aa14.21□□□□□ -0.13
CLN3-248ENST00000636355 NCKAP5LQ9HCH0 1330 aa14.2□□□□□ -0.14
CLN3-248ENST00000636355 SSH2Q76I76 1423 aa14.2□□□□□ -0.14
CLN3-248ENST00000636355 OVOS2A0A0J9YW53 1432 aa14.19□□□□□ -0.14
CLN3-248ENST00000636355 OVOS2Q6IE36 1432 aa14.19□□□□□ -0.14
CLN3-248ENST00000636355 HNRNPUQ00839 825 aaKnown RBP eCLIP14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms