RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 PRAG1Q86YV5 1406 aa24.08■■□□□ 1.44
CLN3-246ENST00000636228 NUTM2FA1L443 756 aa24.07■■□□□ 1.44
CLN3-246ENST00000636228 ESCO1Q5FWF5 840 aa24.07■■□□□ 1.44
CLN3-246ENST00000636228 NGLY1Q96IV0 654 aa24.06■■□□□ 1.44
CLN3-246ENST00000636228 XPCQ01831 940 aaPredicted RBP24.04■■□□□ 1.44
CLN3-246ENST00000636228 ANKRD30BQ9BXX2 1392 aa24.03■■□□□ 1.44
CLN3-246ENST00000636228 PLEKHH1Q9ULM0 1364 aa24.03■■□□□ 1.44
CLN3-246ENST00000636228 FOXO3O43524 673 aa24.01■■□□□ 1.43
CLN3-246ENST00000636228 LRPPRCP42704 1394 aaKnown RBP24.01■■□□□ 1.43
CLN3-246ENST00000636228 RBM6P78332 1123 aaKnown RBP24■■□□□ 1.43
CLN3-246ENST00000636228 USP21Q9UK80 565 aa23.98■■□□□ 1.43
CLN3-246ENST00000636228 ABCC11Q96J66 1382 aa23.98■■□□□ 1.43
CLN3-246ENST00000636228 LAMC1P11047 1609 aa23.98■■□□□ 1.43
CLN3-246ENST00000636228 PIK3C2GO75747 1445 aa23.97■■□□□ 1.43
CLN3-246ENST00000636228 NPHP3Q7Z494 1330 aa23.97■■□□□ 1.43
CLN3-246ENST00000636228 CDK12Q9NYV4 1490 aaPredicted RBP23.97■■□□□ 1.43
CLN3-246ENST00000636228 RGS12O14924 1447 aa23.96■■□□□ 1.43
CLN3-246ENST00000636228 TECPR2O15040 1411 aa23.96■■□□□ 1.43
CLN3-246ENST00000636228 CDC42BPGQ6DT37 1551 aa23.95■■□□□ 1.43
CLN3-246ENST00000636228 CFAP70Q5T0N1 1121 aa23.95■■□□□ 1.42
CLN3-246ENST00000636228 YTHDC2Q9H6S0 1430 aaKnown RBP23.93■■□□□ 1.42
CLN3-246ENST00000636228 C14orf93Q9H972 538 aaKnown RBP23.93■■□□□ 1.42
CLN3-246ENST00000636228 FNBP4Q8N3X1 1017 aaPredicted RBP23.92■■□□□ 1.42
CLN3-246ENST00000636228 PXDNQ92626 1479 aa23.92■■□□□ 1.42
CLN3-246ENST00000636228 SAFB2Q14151 953 aaKnown RBP eCLIP23.91■■□□□ 1.42
CLN3-246ENST00000636228 IFT172Q9UG01 1749 aa23.9■■□□□ 1.42
CLN3-246ENST00000636228 TRPC5Q9UL62 973 aaPredicted RBP23.9■■□□□ 1.42
CLN3-246ENST00000636228 RAB3GAP2Q9H2M9 1393 aa23.9■■□□□ 1.42
CLN3-246ENST00000636228 MYOM2P54296 1465 aa23.88■■□□□ 1.41
CLN3-246ENST00000636228 SIRT1Q96EB6 747 aa23.87■■□□□ 1.41
CLN3-246ENST00000636228 DHX57Q6P158 1386 aaKnown RBP23.87■■□□□ 1.41
CLN3-246ENST00000636228 KRT28Q7Z3Y7 464 aa23.86■■□□□ 1.41
CLN3-246ENST00000636228 PRAM1Q96QH2 718 aa23.86■■□□□ 1.41
CLN3-246ENST00000636228 ACIN1Q9UKV3 1341 aaKnown RBP23.85■■□□□ 1.41
CLN3-246ENST00000636228 PLEKHG5O94827 1062 aa23.85■■□□□ 1.41
CLN3-246ENST00000636228 COL22A1Q8NFW1 1626 aaPredicted RBP23.84■■□□□ 1.41
CLN3-246ENST00000636228 NRXN1Q9ULB1 1477 aa23.84■■□□□ 1.41
CLN3-246ENST00000636228 SPATA31A3Q5VYP0 1347 aa23.84■■□□□ 1.41
CLN3-246ENST00000636228 ATRNO75882 1429 aa23.83■■□□□ 1.4
CLN3-246ENST00000636228 BCL9LQ86UU0 1499 aa23.82■■□□□ 1.4
CLN3-246ENST00000636228 KNDC1Q76NI1 1749 aa23.82■■□□□ 1.4
CLN3-246ENST00000636228 PHF8Q9UPP1 1060 aa23.82■■□□□ 1.4
CLN3-246ENST00000636228 KDM2AQ9Y2K7 1162 aa23.82■■□□□ 1.4
CLN3-246ENST00000636228 POGKQ9P215 609 aa23.81■■□□□ 1.4
CLN3-246ENST00000636228 FMN2Q9NZ56 1722 aa23.79■■□□□ 1.4
CLN3-246ENST00000636228 CABLES1Q8TDN4 633 aa23.79■■□□□ 1.4
CLN3-246ENST00000636228 TRAK1Q9UPV9 953 aa23.79■■□□□ 1.4
CLN3-246ENST00000636228 LMOD2Q6P5Q4 547 aa23.77■■□□□ 1.4
CLN3-246ENST00000636228 PMFBP1Q8TBY8 1022 aa23.77■■□□□ 1.4
CLN3-246ENST00000636228 DCAF11Q8TEB1 546 aa23.77■■□□□ 1.4
CLN3-246ENST00000636228 GJD4Q96KN9 370 aaPredicted RBP23.77■■□□□ 1.4
CLN3-246ENST00000636228 HIRIP3Q9BW71 556 aaPredicted RBP23.77■■□□□ 1.4
CLN3-246ENST00000636228 ATAD2Q6PL18 1390 aa23.77■■□□□ 1.4
CLN3-246ENST00000636228 PSME1Q06323 249 aa23.76■■□□□ 1.39
CLN3-246ENST00000636228 HAP1P54257 671 aaPredicted RBP23.74■■□□□ 1.39
CLN3-246ENST00000636228 UNC5CLQ8IV45 518 aa23.74■■□□□ 1.39
CLN3-246ENST00000636228 MINK1Q8N4C8 1332 aaPredicted RBP23.73■■□□□ 1.39
CLN3-246ENST00000636228 KIF1AQ12756 1690 aa23.71■■□□□ 1.39
CLN3-246ENST00000636228 TNS3Q68CZ2 1445 aa23.71■■□□□ 1.39
CLN3-246ENST00000636228 ADGRB1O14514 1584 aa23.69■■□□□ 1.38
CLN3-246ENST00000636228 SLIT2O94813 1529 aa23.69■■□□□ 1.38
CLN3-246ENST00000636228 DLC1Q96QB1 1528 aa23.69■■□□□ 1.38
CLN3-246ENST00000636228 RGPD8O14715 1765 aaPredicted RBP23.68■■□□□ 1.38
CLN3-246ENST00000636228 SBNO1A3KN83 1393 aa23.68■■□□□ 1.38
CLN3-246ENST00000636228 RALGAPBQ86X10 1494 aa23.67■■□□□ 1.38
CLN3-246ENST00000636228 PRR36Q9H6K5 1346 aa23.66■■□□□ 1.38
CLN3-246ENST00000636228 MARF1Q9Y4F3 1742 aaKnown RBP23.66■■□□□ 1.38
CLN3-246ENST00000636228 ANKARQ7Z5J8 1434 aa23.65■■□□□ 1.38
CLN3-246ENST00000636228 FAM83GA6ND36 823 aa23.64■■□□□ 1.37
CLN3-246ENST00000636228 WASLO00401 505 aaPredicted RBP23.64■■□□□ 1.37
CLN3-246ENST00000636228 CCDC9Q9Y3X0 531 aaKnown RBP23.64■■□□□ 1.37
CLN3-246ENST00000636228 USP32Q8NFA0 1604 aa23.63■■□□□ 1.37
CLN3-246ENST00000636228 ARHGEF10O15013 1369 aa23.63■■□□□ 1.37
CLN3-246ENST00000636228 GLI3P10071 1580 aa23.62■■□□□ 1.37
CLN3-246ENST00000636228 HRCP23327 699 aa23.62■■□□□ 1.37
CLN3-246ENST00000636228 VPS72Q15906 364 aa23.62■■□□□ 1.37
CLN3-246ENST00000636228 SEPT12Q8IYM1 358 aa23.62■■□□□ 1.37
CLN3-246ENST00000636228 NGDNQ8NEJ9 315 aaKnown RBP23.59■■□□□ 1.37
CLN3-246ENST00000636228 GPRASP1Q5JY77 1395 aa23.59■■□□□ 1.37
CLN3-246ENST00000636228 ADGRB2O60241 1585 aa23.58■■□□□ 1.37
CLN3-246ENST00000636228 PAK3O75914 559 aaPredicted RBP23.58■■□□□ 1.37
CLN3-246ENST00000636228 CCDC125Q86Z20 511 aa23.58■■□□□ 1.37
CLN3-246ENST00000636228 STAC3Q96MF2 364 aa23.58■■□□□ 1.37
CLN3-246ENST00000636228 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.57■■□□□ 1.36
CLN3-246ENST00000636228 ZRANB1Q9UGI0 708 aa23.56■■□□□ 1.36
CLN3-246ENST00000636228 TULP4Q9NRJ4 1543 aa23.55■■□□□ 1.36
CLN3-246ENST00000636228 BTG4Q9NY30 223 aa23.55■■□□□ 1.36
CLN3-246ENST00000636228 EIF3AQ14152 1382 aaKnown RBP23.54■■□□□ 1.36
CLN3-246ENST00000636228 NUDT16Q96DE0 195 aaKnown RBP23.54■■□□□ 1.36
CLN3-246ENST00000636228 A0A0G2JS52 829 aa23.53■■□□□ 1.36
CLN3-246ENST00000636228 ONECUT3O60422 494 aaPredicted RBP23.53■■□□□ 1.36
CLN3-246ENST00000636228 MYT1Q01538 1121 aa23.53■■□□□ 1.36
CLN3-246ENST00000636228 DEFB132Q7Z7B7 95 aa23.53■■□□□ 1.36
CLN3-246ENST00000636228 EP400Q96L91 3159 aa23.52■■□□□ 1.36
CLN3-246ENST00000636228 CDK19Q9BWU1 502 aa23.52■■□□□ 1.36
CLN3-246ENST00000636228 FAM98CQ17RN3 349 aaKnown RBP23.51■■□□□ 1.35
CLN3-246ENST00000636228 KRT27Q7Z3Y8 459 aa23.51■■□□□ 1.35
CLN3-246ENST00000636228 PLCH1Q4KWH8 1693 aa23.51■■□□□ 1.35
CLN3-246ENST00000636228 TRPM3Q9HCF6 1732 aaPredicted RBP23.5■■□□□ 1.35
CLN3-246ENST00000636228 NBPF1Q3BBV0 1214 aa23.5■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms