RNA–Protein interactions for RNA: ENST00000635675.2

LINC00339-210, long intergenic non-protein coding RNA 339, human

TSL 5 BASIC

Gene LINC00339, Length 1,404 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LINC00339-210	ENST00000635675	CCER1	Q8TC90	406 aa	Predicted RBP	13.98	□□□□□ -0.17
LINC00339-210	ENST00000635675	TRAK1	Q9UPV9	953 aa		13.98	□□□□□ -0.17
LINC00339-210	ENST00000635675	PRAM1	Q96QH2	718 aa		13.97	□□□□□ -0.17
LINC00339-210	ENST00000635675	TRPM1	Q7Z4N2	1603 aa		13.95	□□□□□ -0.18
LINC00339-210	ENST00000635675	TIMELESS	Q9UNS1	1208 aa		13.95	□□□□□ -0.18
LINC00339-210	ENST00000635675	POGK	Q9P215	609 aa		13.94	□□□□□ -0.18
LINC00339-210	ENST00000635675	MST1R	Q04912	1400 aa		13.94	□□□□□ -0.18
LINC00339-210	ENST00000635675	HSPA1L	P34931	641 aa		13.93	□□□□□ -0.18
LINC00339-210	ENST00000635675	SAFB2	Q14151	953 aa	Known RBP eCLIP	13.93	□□□□□ -0.18
LINC00339-210	ENST00000635675	CDC42BPG	Q6DT37	1551 aa		13.93	□□□□□ -0.18
LINC00339-210	ENST00000635675	ROBO1	Q9Y6N7	1651 aa		13.93	□□□□□ -0.18
LINC00339-210	ENST00000635675	ARHGEF28	Q8N1W1	1705 aa	Known RBP	13.92	□□□□□ -0.18
LINC00339-210	ENST00000635675	C1orf167	Q5SNV9	1468 aa		13.91	□□□□□ -0.18
LINC00339-210	ENST00000635675	ROCK2	O75116	1388 aa	Known RBP	13.91	□□□□□ -0.18
LINC00339-210	ENST00000635675	GPRASP1	Q5JY77	1395 aa		13.91	□□□□□ -0.18
LINC00339-210	ENST00000635675	BRINP3	Q76B58	766 aa		13.9	□□□□□ -0.18
LINC00339-210	ENST00000635675	RALGAPB	Q86X10	1494 aa		13.89	□□□□□ -0.19
LINC00339-210	ENST00000635675	MINK1	Q8N4C8	1332 aa	Predicted RBP	13.88	□□□□□ -0.19
LINC00339-210	ENST00000635675	ADGRB2	O60241	1585 aa		13.88	□□□□□ -0.19
LINC00339-210	ENST00000635675	ORAI2	Q96SN7	254 aa		13.88	□□□□□ -0.19
LINC00339-210	ENST00000635675	HIRIP3	Q9BW71	556 aa	Predicted RBP	13.88	□□□□□ -0.19
LINC00339-210	ENST00000635675	FMN2	Q9NZ56	1722 aa		13.87	□□□□□ -0.19
LINC00339-210	ENST00000635675	CENPJ	Q9HC77	1338 aa	Predicted RBP	13.86	□□□□□ -0.19
LINC00339-210	ENST00000635675	NUTM2F	A1L443	756 aa		13.86	□□□□□ -0.19
LINC00339-210	ENST00000635675	CARD11	Q9BXL7	1154 aa		13.86	□□□□□ -0.19
LINC00339-210	ENST00000635675	WASL	O00401	505 aa	Predicted RBP	13.85	□□□□□ -0.19
LINC00339-210	ENST00000635675	AHDC1	Q5TGY3	1603 aa	Predicted RBP	13.84	□□□□□ -0.19
LINC00339-210	ENST00000635675	ESCO1	Q5FWF5	840 aa		13.84	□□□□□ -0.19
LINC00339-210	ENST00000635675	PHLPP1	O60346	1717 aa		13.84	□□□□□ -0.19
LINC00339-210	ENST00000635675	ANKAR	Q7Z5J8	1434 aa		13.83	□□□□□ -0.2
LINC00339-210	ENST00000635675	RGPD8	O14715	1765 aa	Predicted RBP	13.82	□□□□□ -0.2
LINC00339-210	ENST00000635675	DDX17	Q92841	729 aa	Known RBP	13.82	□□□□□ -0.2
LINC00339-210	ENST00000635675	NHSL1	Q5SYE7	1610 aa		13.82	□□□□□ -0.2
LINC00339-210	ENST00000635675	EIF3A	Q14152	1382 aa	Known RBP	13.82	□□□□□ -0.2
LINC00339-210	ENST00000635675	COL16A1	Q07092	1604 aa	Predicted RBP	13.82	□□□□□ -0.2
LINC00339-210	ENST00000635675	USP32	Q8NFA0	1604 aa		13.82	□□□□□ -0.2
LINC00339-210	ENST00000635675	CDK19	Q9BWU1	502 aa		13.81	□□□□□ -0.2
LINC00339-210	ENST00000635675	QRICH2	Q9H0J4	1663 aa		13.81	□□□□□ -0.2
LINC00339-210	ENST00000635675	PRR36	Q9H6K5	1346 aa		13.81	□□□□□ -0.2
LINC00339-210	ENST00000635675	TULP4	Q9NRJ4	1543 aa		13.8	□□□□□ -0.2
LINC00339-210	ENST00000635675	FOXO3	O43524	673 aa		13.8	□□□□□ -0.2
LINC00339-210	ENST00000635675	SOS2	Q07890	1332 aa	Predicted RBP	13.79	□□□□□ -0.2
LINC00339-210	ENST00000635675	NUDT16	Q96DE0	195 aa	Known RBP	13.79	□□□□□ -0.2
LINC00339-210	ENST00000635675	PHF8	Q9UPP1	1060 aa		13.79	□□□□□ -0.2
LINC00339-210	ENST00000635675	NPHP3	Q7Z494	1330 aa		13.78	□□□□□ -0.2
LINC00339-210	ENST00000635675	SBNO2	Q9Y2G9	1366 aa		13.78	□□□□□ -0.2
LINC00339-210	ENST00000635675	LRRC59	Q96AG4	307 aa	Known RBP	13.78	□□□□□ -0.2
LINC00339-210	ENST00000635675	KIF1A	Q12756	1690 aa		13.78	□□□□□ -0.2
LINC00339-210	ENST00000635675	ATP7B	P35670	1465 aa		13.77	□□□□□ -0.2
LINC00339-210	ENST00000635675	JCAD	Q9P266	1359 aa		13.77	□□□□□ -0.2
LINC00339-210	ENST00000635675	EVC2	Q86UK5	1308 aa		13.77	□□□□□ -0.21
LINC00339-210	ENST00000635675	ST20-MTHFS	A0A0A6YYL1	179 aa		13.76	□□□□□ -0.21
LINC00339-210	ENST00000635675	PMFBP1	Q8TBY8	1022 aa		13.76	□□□□□ -0.21
LINC00339-210	ENST00000635675	CCDC61	Q9Y6R9	512 aa		13.76	□□□□□ -0.21
LINC00339-210	ENST00000635675	PXDN	Q92626	1479 aa		13.76	□□□□□ -0.21
LINC00339-210	ENST00000635675	SRPK2	P78362	688 aa	Known RBP	13.75	□□□□□ -0.21
LINC00339-210	ENST00000635675	CABP2	Q9NPB3	220 aa		13.75	□□□□□ -0.21
LINC00339-210	ENST00000635675	USP47	Q96K76	1375 aa		13.75	□□□□□ -0.21
LINC00339-210	ENST00000635675	XPC	Q01831	940 aa	Predicted RBP	13.74	□□□□□ -0.21
LINC00339-210	ENST00000635675	KRT28	Q7Z3Y7	464 aa		13.74	□□□□□ -0.21
LINC00339-210	ENST00000635675	TESK2	Q96S53	571 aa		13.74	□□□□□ -0.21
LINC00339-210	ENST00000635675	ITSN1	Q15811	1721 aa		13.74	□□□□□ -0.21
LINC00339-210	ENST00000635675	PLEKHG3	A1L390	1219 aa		13.73	□□□□□ -0.21
LINC00339-210	ENST00000635675	PSME1	Q06323	249 aa		13.73	□□□□□ -0.21
LINC00339-210	ENST00000635675	SHPRH	Q149N8	1683 aa		13.73	□□□□□ -0.21
LINC00339-210	ENST00000635675	TOPAZ1	Q8N9V7	1692 aa		13.73	□□□□□ -0.21
LINC00339-210	ENST00000635675	NGDN	Q8NEJ9	315 aa	Known RBP	13.72	□□□□□ -0.21
LINC00339-210	ENST00000635675	SPATA31A6	Q5VVP1	1343 aa		13.72	□□□□□ -0.21
LINC00339-210	ENST00000635675	POLR3A	O14802	1390 aa	Predicted RBP	13.71	□□□□□ -0.21
LINC00339-210	ENST00000635675	PNPLA6	Q8IY17	1366 aa		13.71	□□□□□ -0.21
LINC00339-210	ENST00000635675	SLC24A1	O60721	1099 aa		13.71	□□□□□ -0.22
LINC00339-210	ENST00000635675	SPATA31A3	Q5VYP0	1347 aa		13.71	□□□□□ -0.22
LINC00339-210	ENST00000635675	PUS7	Q96PZ0	661 aa	Known RBP	13.7	□□□□□ -0.22
LINC00339-210	ENST00000635675	CABP1	Q9NZU7	370 aa		13.7	□□□□□ -0.22
LINC00339-210	ENST00000635675	ACE	P12821	1306 aa		13.7	□□□□□ -0.22
LINC00339-210	ENST00000635675	SBNO1	A3KN83	1393 aa		13.7	□□□□□ -0.22
LINC00339-210	ENST00000635675	PPIP5K1	Q6PFW1	1433 aa		13.7	□□□□□ -0.22
LINC00339-210	ENST00000635675	MED1	Q15648	1581 aa	Predicted RBP	13.7	□□□□□ -0.22
LINC00339-210	ENST00000635675	ATAD2	Q6PL18	1390 aa		13.68	□□□□□ -0.22
LINC00339-210	ENST00000635675	TNS3	Q68CZ2	1445 aa		13.67	□□□□□ -0.22
LINC00339-210	ENST00000635675	TRPM3	Q9HCF6	1732 aa	Predicted RBP	13.67	□□□□□ -0.22
LINC00339-210	ENST00000635675	LRP6	O75581	1613 aa		13.67	□□□□□ -0.22
LINC00339-210	ENST00000635675	COL22A1	Q8NFW1	1626 aa	Predicted RBP	13.67	□□□□□ -0.22
LINC00339-210	ENST00000635675	NUTM2B	A6NNL0	878 aa	Predicted RBP	13.66	□□□□□ -0.22
LINC00339-210	ENST00000635675	NUTM2E	B1AL46	878 aa	Predicted RBP	13.66	□□□□□ -0.22
LINC00339-210	ENST00000635675	EIF4G2	P78344	907 aa	Known RBP eCLIP	13.66	□□□□□ -0.22
LINC00339-210	ENST00000635675	NUTM2A	Q8IVF1	878 aa	Predicted RBP	13.66	□□□□□ -0.22
LINC00339-210	ENST00000635675	DISP3	Q9P2K9	1392 aa		13.66	□□□□□ -0.22
LINC00339-210	ENST00000635675	TMF1	P82094	1093 aa		13.65	□□□□□ -0.22
LINC00339-210	ENST00000635675	HSPA5	P11021	654 aa	Known RBP	13.64	□□□□□ -0.23
LINC00339-210	ENST00000635675	ALS2	Q96Q42	1657 aa		13.64	□□□□□ -0.23
LINC00339-210	ENST00000635675	ARHGEF10	O15013	1369 aa		13.64	□□□□□ -0.23
LINC00339-210	ENST00000635675	PAK3	O75914	559 aa	Predicted RBP	13.64	□□□□□ -0.23
LINC00339-210	ENST00000635675	LMOD2	Q6P5Q4	547 aa		13.64	□□□□□ -0.23
LINC00339-210	ENST00000635675	ZNF692	Q9BU19	519 aa	Predicted RBP	13.64	□□□□□ -0.23
LINC00339-210	ENST00000635675	SLC12A5	Q9H2X9	1139 aa		13.64	□□□□□ -0.23
LINC00339-210	ENST00000635675	CPSF1	Q10570	1443 aa	Known RBP	13.63	□□□□□ -0.23
LINC00339-210	ENST00000635675	BRD4	O60885	1362 aa	Predicted RBP	13.63	□□□□□ -0.23
LINC00339-210	ENST00000635675	USP6	P35125	1406 aa		13.63	□□□□□ -0.23
LINC00339-210	ENST00000635675	CDCA8	Q53HL2	280 aa		13.62	□□□□□ -0.23

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