RNA–Protein interactions for RNA: ENST00000629088.1

PNKP-222, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 619 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-222ENST00000629088 FOXD1Q16676 465 aa23.6■■□□□ 1.37
PNKP-222ENST00000629088 ANKRD30BQ9BXX2 1392 aa23.6■■□□□ 1.37
PNKP-222ENST00000629088 LAMC1P11047 1609 aa23.59■■□□□ 1.37
PNKP-222ENST00000629088 IFT172Q9UG01 1749 aa23.56■■□□□ 1.36
PNKP-222ENST00000629088 TECPR2O15040 1411 aa23.54■■□□□ 1.36
PNKP-222ENST00000629088 USP21Q9UK80 565 aa23.54■■□□□ 1.36
PNKP-222ENST00000629088 ADGRF5Q8IZF2 1346 aa23.54■■□□□ 1.36
PNKP-222ENST00000629088 CDC42BPGQ6DT37 1551 aa23.52■■□□□ 1.36
PNKP-222ENST00000629088 PIK3C2GO75747 1445 aa23.51■■□□□ 1.35
PNKP-222ENST00000629088 RGL3Q3MIN7 710 aa23.51■■□□□ 1.35
PNKP-222ENST00000629088 ESCO1Q5FWF5 840 aa23.51■■□□□ 1.35
PNKP-222ENST00000629088 FNBP4Q8N3X1 1017 aaPredicted RBP23.51■■□□□ 1.35
PNKP-222ENST00000629088 TRPC5Q9UL62 973 aaPredicted RBP23.5■■□□□ 1.35
PNKP-222ENST00000629088 LRPPRCP42704 1394 aaKnown RBP23.5■■□□□ 1.35
PNKP-222ENST00000629088 ABCC11Q96J66 1382 aa23.5■■□□□ 1.35
PNKP-222ENST00000629088 SRCAPQ6ZRS2 3230 aa23.49■■□□□ 1.35
PNKP-222ENST00000629088 KNDC1Q76NI1 1749 aa23.47■■□□□ 1.35
PNKP-222ENST00000629088 STK26Q9P289 416 aa23.47■■□□□ 1.35
PNKP-222ENST00000629088 NPHP3Q7Z494 1330 aa23.47■■□□□ 1.35
PNKP-222ENST00000629088 FOXO3O43524 673 aa23.46■■□□□ 1.35
PNKP-222ENST00000629088 XPCQ01831 940 aaPredicted RBP23.46■■□□□ 1.35
PNKP-222ENST00000629088 WAPLQ7Z5K2 1190 aa23.46■■□□□ 1.35
PNKP-222ENST00000629088 ATRNO75882 1429 aa23.45■■□□□ 1.34
PNKP-222ENST00000629088 ATAD2Q6PL18 1390 aa23.45■■□□□ 1.34
PNKP-222ENST00000629088 MYOM2P54296 1465 aa23.44■■□□□ 1.34
PNKP-222ENST00000629088 NRXN1Q9ULB1 1477 aa23.44■■□□□ 1.34
PNKP-222ENST00000629088 NUTM2FA1L443 756 aa23.44■■□□□ 1.34
PNKP-222ENST00000629088 PXDNQ92626 1479 aa23.43■■□□□ 1.34
PNKP-222ENST00000629088 RAB3GAP2Q9H2M9 1393 aa23.42■■□□□ 1.34
PNKP-222ENST00000629088 SIRT1Q96EB6 747 aa23.42■■□□□ 1.34
PNKP-222ENST00000629088 YTHDC2Q9H6S0 1430 aaKnown RBP23.42■■□□□ 1.34
PNKP-222ENST00000629088 COL22A1Q8NFW1 1626 aaPredicted RBP23.41■■□□□ 1.34
PNKP-222ENST00000629088 TMEM132EQ6IEE7 984 aa23.41■■□□□ 1.34
PNKP-222ENST00000629088 C14orf93Q9H972 538 aaKnown RBP23.4■■□□□ 1.34
PNKP-222ENST00000629088 PLEKHH1Q9ULM0 1364 aa23.4■■□□□ 1.34
PNKP-222ENST00000629088 BCL9LQ86UU0 1499 aa23.39■■□□□ 1.34
PNKP-222ENST00000629088 EP400Q96L91 3159 aa23.35■■□□□ 1.33
PNKP-222ENST00000629088 GJD4Q96KN9 370 aaPredicted RBP23.35■■□□□ 1.33
PNKP-222ENST00000629088 DHX57Q6P158 1386 aaKnown RBP23.35■■□□□ 1.33
PNKP-222ENST00000629088 FMN2Q9NZ56 1722 aa23.34■■□□□ 1.33
PNKP-222ENST00000629088 HRCP23327 699 aa23.33■■□□□ 1.33
PNKP-222ENST00000629088 SPATA31A3Q5VYP0 1347 aa23.33■■□□□ 1.32
PNKP-222ENST00000629088 KIF1AQ12756 1690 aa23.32■■□□□ 1.32
PNKP-222ENST00000629088 CFAP70Q5T0N1 1121 aa23.31■■□□□ 1.32
PNKP-222ENST00000629088 DLC1Q96QB1 1528 aa23.3■■□□□ 1.32
PNKP-222ENST00000629088 KRT28Q7Z3Y7 464 aa23.3■■□□□ 1.32
PNKP-222ENST00000629088 UNC5CLQ8IV45 518 aa23.3■■□□□ 1.32
PNKP-222ENST00000629088 STAC3Q96MF2 364 aa23.29■■□□□ 1.32
PNKP-222ENST00000629088 CCDC125Q86Z20 511 aa23.28■■□□□ 1.32
PNKP-222ENST00000629088 ZRANB1Q9UGI0 708 aa23.28■■□□□ 1.32
PNKP-222ENST00000629088 SLIT2O94813 1529 aa23.26■■□□□ 1.31
PNKP-222ENST00000629088 PHF8Q9UPP1 1060 aa23.25■■□□□ 1.31
PNKP-222ENST00000629088 ADGRB1O14514 1584 aa23.25■■□□□ 1.31
PNKP-222ENST00000629088 RALGAPBQ86X10 1494 aa23.24■■□□□ 1.31
PNKP-222ENST00000629088 MARF1Q9Y4F3 1742 aaKnown RBP23.24■■□□□ 1.31
PNKP-222ENST00000629088 ADGRB2O60241 1585 aa23.23■■□□□ 1.31
PNKP-222ENST00000629088 CABLES1Q8TDN4 633 aa23.23■■□□□ 1.31
PNKP-222ENST00000629088 PRAM1Q96QH2 718 aa23.23■■□□□ 1.31
PNKP-222ENST00000629088 PLEKHG5O94827 1062 aa23.22■■□□□ 1.31
PNKP-222ENST00000629088 PSME1Q06323 249 aa23.22■■□□□ 1.31
PNKP-222ENST00000629088 SAFB2Q14151 953 aaKnown RBP eCLIP23.22■■□□□ 1.31
PNKP-222ENST00000629088 ANKARQ7Z5J8 1434 aa23.22■■□□□ 1.31
PNKP-222ENST00000629088 HAP1P54257 671 aaPredicted RBP23.21■■□□□ 1.31
PNKP-222ENST00000629088 GLI3P10071 1580 aa23.21■■□□□ 1.31
PNKP-222ENST00000629088 TNS3Q68CZ2 1445 aa23.19■■□□□ 1.3
PNKP-222ENST00000629088 POGKQ9P215 609 aa23.19■■□□□ 1.3
PNKP-222ENST00000629088 VPS72Q15906 364 aa23.18■■□□□ 1.3
PNKP-222ENST00000629088 LMOD2Q6P5Q4 547 aa23.18■■□□□ 1.3
PNKP-222ENST00000629088 SEPT12Q8IYM1 358 aa23.18■■□□□ 1.3
PNKP-222ENST00000629088 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.18■■□□□ 1.3
PNKP-222ENST00000629088 SBNO1A3KN83 1393 aa23.17■■□□□ 1.3
PNKP-222ENST00000629088 EIF3AQ14152 1382 aaKnown RBP23.17■■□□□ 1.3
PNKP-222ENST00000629088 DCAF11Q8TEB1 546 aa23.17■■□□□ 1.3
PNKP-222ENST00000629088 USP32Q8NFA0 1604 aa23.17■■□□□ 1.3
PNKP-222ENST00000629088 RGPD8O14715 1765 aaPredicted RBP23.16■■□□□ 1.3
PNKP-222ENST00000629088 BLMP54132 1417 aaPredicted RBP23.16■■□□□ 1.3
PNKP-222ENST00000629088 PMFBP1Q8TBY8 1022 aa23.15■■□□□ 1.3
PNKP-222ENST00000629088 DEFB132Q7Z7B7 95 aa23.14■■□□□ 1.29
PNKP-222ENST00000629088 CCDC9Q9Y3X0 531 aaKnown RBP23.14■■□□□ 1.29
PNKP-222ENST00000629088 FAM83GA6ND36 823 aa23.13■■□□□ 1.29
PNKP-222ENST00000629088 ONECUT3O60422 494 aaPredicted RBP23.13■■□□□ 1.29
PNKP-222ENST00000629088 TRAK1Q9UPV9 953 aa23.13■■□□□ 1.29
PNKP-222ENST00000629088 KDM2AQ9Y2K7 1162 aa23.13■■□□□ 1.29
PNKP-222ENST00000629088 ARHGEF10O15013 1369 aa23.13■■□□□ 1.29
PNKP-222ENST00000629088 TULP4Q9NRJ4 1543 aa23.1■■□□□ 1.29
PNKP-222ENST00000629088 SF3B2Q13435 895 aaKnown RBP23.09■■□□□ 1.29
PNKP-222ENST00000629088 HIRIP3Q9BW71 556 aaPredicted RBP23.09■■□□□ 1.29
PNKP-222ENST00000629088 KRT27Q7Z3Y8 459 aa23.08■■□□□ 1.29
PNKP-222ENST00000629088 WASLO00401 505 aaPredicted RBP23.07■■□□□ 1.28
PNKP-222ENST00000629088 MINK1Q8N4C8 1332 aaPredicted RBP23.06■■□□□ 1.28
PNKP-222ENST00000629088 BRWD3Q6RI45 1802 aa23.05■■□□□ 1.28
PNKP-222ENST00000629088 ARHGEF28Q8N1W1 1705 aaKnown RBP23.05■■□□□ 1.28
PNKP-222ENST00000629088 ABCA3Q99758 1704 aa23.05■■□□□ 1.28
PNKP-222ENST00000629088 GPRASP1Q5JY77 1395 aa23.05■■□□□ 1.28
PNKP-222ENST00000629088 PRR36Q9H6K5 1346 aa23.05■■□□□ 1.28
PNKP-222ENST00000629088 PLCH1Q4KWH8 1693 aa23.04■■□□□ 1.28
PNKP-222ENST00000629088 BTG4Q9NY30 223 aa23.04■■□□□ 1.28
PNKP-222ENST00000629088 TRPM3Q9HCF6 1732 aaPredicted RBP23.04■■□□□ 1.28
PNKP-222ENST00000629088 NWD2Q9ULI1 1742 aa23.04■■□□□ 1.28
PNKP-222ENST00000629088 KIAA1210Q9ULL0 1709 aa23.04■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms