RNA–Protein interactions for RNA: ENST00000624931.1

PCF11-207, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

Gene PCF11, Length 1,720 nt, Biotype TEC, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-207ENST00000624931 KDM4FA0A1W2PPD8 638 aa23.67■■□□□ 1.38
PCF11-207ENST00000624931 PLEKHH1Q9ULM0 1364 aa23.67■■□□□ 1.38
PCF11-207ENST00000624931 DLC1Q96QB1 1528 aa23.66■■□□□ 1.38
PCF11-207ENST00000624931 KNDC1Q76NI1 1749 aa23.66■■□□□ 1.38
PCF11-207ENST00000624931 SMG6Q86US8 1419 aaKnown RBP23.66■■□□□ 1.38
PCF11-207ENST00000624931 BCL11AQ9H165 835 aa23.65■■□□□ 1.38
PCF11-207ENST00000624931 FAM9BQ8IZU0 186 aa23.64■■□□□ 1.38
PCF11-207ENST00000624931 IRX6P78412 446 aaPredicted RBP23.64■■□□□ 1.37
PCF11-207ENST00000624931 CNGB1Q14028 1251 aaPredicted RBP23.64■■□□□ 1.37
PCF11-207ENST00000624931 CCDC184Q52MB2 194 aa23.64■■□□□ 1.37
PCF11-207ENST00000624931 WAPLQ7Z5K2 1190 aa23.63■■□□□ 1.37
PCF11-207ENST00000624931 POGKQ9P215 609 aa23.63■■□□□ 1.37
PCF11-207ENST00000624931 MINK1Q8N4C8 1332 aaPredicted RBP23.63■■□□□ 1.37
PCF11-207ENST00000624931 ABCC11Q96J66 1382 aa23.62■■□□□ 1.37
PCF11-207ENST00000624931 PTPRUQ92729 1446 aa23.62■■□□□ 1.37
PCF11-207ENST00000624931 CPS1P31327 1500 aa23.62■■□□□ 1.37
PCF11-207ENST00000624931 CDCA8Q53HL2 280 aa23.61■■□□□ 1.37
PCF11-207ENST00000624931 DIP2AQ14689 1571 aa23.6■■□□□ 1.37
PCF11-207ENST00000624931 TECPR2O15040 1411 aa23.6■■□□□ 1.37
PCF11-207ENST00000624931 PANK3Q9H999 370 aa23.59■■□□□ 1.37
PCF11-207ENST00000624931 ANKLE2Q86XL3 938 aa23.58■■□□□ 1.37
PCF11-207ENST00000624931 ROBO2Q9HCK4 1378 aa23.57■■□□□ 1.36
PCF11-207ENST00000624931 RNF123Q5XPI4 1314 aa23.56■■□□□ 1.36
PCF11-207ENST00000624931 EVC2Q86UK5 1308 aa23.56■■□□□ 1.36
PCF11-207ENST00000624931 TBX22Q9Y458 520 aa23.56■■□□□ 1.36
PCF11-207ENST00000624931 CABP2Q9NPB3 220 aa23.55■■□□□ 1.36
PCF11-207ENST00000624931 SLC24A1O60721 1099 aa23.54■■□□□ 1.36
PCF11-207ENST00000624931 NCKAP5LQ9HCH0 1330 aa23.53■■□□□ 1.36
PCF11-207ENST00000624931 NUDCQ9Y266 331 aa23.53■■□□□ 1.36
PCF11-207ENST00000624931 XRN1Q8IZH2 1706 aaKnown RBP23.53■■□□□ 1.36
PCF11-207ENST00000624931 KTN1Q86UP2 1357 aaKnown RBP23.53■■□□□ 1.36
PCF11-207ENST00000624931 FAM135BQ49AJ0 1406 aa23.52■■□□□ 1.36
PCF11-207ENST00000624931 PER1O15534 1290 aaPredicted RBP23.52■■□□□ 1.36
PCF11-207ENST00000624931 NPHP4O75161 1426 aaPredicted RBP23.51■■□□□ 1.35
PCF11-207ENST00000624931 AMOTL2Q9Y2J4 779 aa23.5■■□□□ 1.35
PCF11-207ENST00000624931 SRPK2P78362 688 aaKnown RBP23.5■■□□□ 1.35
PCF11-207ENST00000624931 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.5■■□□□ 1.35
PCF11-207ENST00000624931 B4GALNT3Q6L9W6 998 aa23.49■■□□□ 1.35
PCF11-207ENST00000624931 TMC1Q8TDI8 760 aa23.49■■□□□ 1.35
PCF11-207ENST00000624931 SLC12A5Q9H2X9 1139 aa23.48■■□□□ 1.35
PCF11-207ENST00000624931 HSPA2P54652 639 aa23.47■■□□□ 1.35
PCF11-207ENST00000624931 CDK19Q9BWU1 502 aa23.47■■□□□ 1.35
PCF11-207ENST00000624931 SIRT1Q96EB6 747 aa23.47■■□□□ 1.35
PCF11-207ENST00000624931 PTCH1Q13635 1447 aa23.46■■□□□ 1.35
PCF11-207ENST00000624931 CHD2O14647 1828 aaKnown RBP23.44■■□□□ 1.34
PCF11-207ENST00000624931 LMTK3Q96Q04 1460 aa23.44■■□□□ 1.34
PCF11-207ENST00000624931 KCNA6P17658 529 aa23.44■■□□□ 1.34
PCF11-207ENST00000624931 CC2D1BQ5T0F9 858 aaKnown RBP23.44■■□□□ 1.34
PCF11-207ENST00000624931 CARD14Q9BXL6 1004 aa23.44■■□□□ 1.34
PCF11-207ENST00000624931 PUS7Q96PZ0 661 aaKnown RBP23.42■■□□□ 1.34
PCF11-207ENST00000624931 PIK3R4Q99570 1358 aa23.42■■□□□ 1.34
PCF11-207ENST00000624931 ADGRB2O60241 1585 aa23.42■■□□□ 1.34
PCF11-207ENST00000624931 ATAD2Q6PL18 1390 aa23.41■■□□□ 1.34
PCF11-207ENST00000624931 WASLO00401 505 aaPredicted RBP23.4■■□□□ 1.34
PCF11-207ENST00000624931 KNSTRNQ9Y448 316 aa23.4■■□□□ 1.34
PCF11-207ENST00000624931 PARD3Q8TEW0 1356 aa23.4■■□□□ 1.34
PCF11-207ENST00000624931 NSD3Q9BZ95 1437 aa23.4■■□□□ 1.34
PCF11-207ENST00000624931 RALBP1Q15311 655 aa23.39■■□□□ 1.33
PCF11-207ENST00000624931 AMER1Q5JTC6 1135 aaPredicted RBP23.39■■□□□ 1.33
PCF11-207ENST00000624931 PNISRQ8TF01 805 aaKnown RBP23.39■■□□□ 1.33
PCF11-207ENST00000624931 NOP58Q9Y2X3 529 aaKnown RBP23.38■■□□□ 1.33
PCF11-207ENST00000624931 BRD4O60885 1362 aaPredicted RBP23.38■■□□□ 1.33
PCF11-207ENST00000624931 CCDC136Q96JN2 1154 aa23.37■■□□□ 1.33
PCF11-207ENST00000624931 CD163L1Q9NR16 1453 aa23.37■■□□□ 1.33
PCF11-207ENST00000624931 ANKRD36BQ8N2N9 1353 aa23.36■■□□□ 1.33
PCF11-207ENST00000624931 A0A1W2PP64 1363 aa23.36■■□□□ 1.33
PCF11-207ENST00000624931 ATP7BP35670 1465 aa23.35■■□□□ 1.33
PCF11-207ENST00000624931 PRR36Q9H6K5 1346 aa23.34■■□□□ 1.33
PCF11-207ENST00000624931 RBM33Q96EV2 1170 aaKnown RBP23.34■■□□□ 1.33
PCF11-207ENST00000624931 NWD1Q149M9 1564 aa23.34■■□□□ 1.33
PCF11-207ENST00000624931 CABP1Q9NZU7 370 aa23.33■■□□□ 1.33
PCF11-207ENST00000624931 NALCNQ8IZF0 1738 aa23.33■■□□□ 1.33
PCF11-207ENST00000624931 NINLQ9Y2I6 1382 aa23.33■■□□□ 1.33
PCF11-207ENST00000624931 NUTM2FA1L443 756 aa23.33■■□□□ 1.32
PCF11-207ENST00000624931 STRCQ7RTU9 1775 aa23.32■■□□□ 1.32
PCF11-207ENST00000624931 MYBBP1AQ9BQG0 1328 aaKnown RBP23.32■■□□□ 1.32
PCF11-207ENST00000624931 ANP32AP39687 249 aaKnown RBP23.32■■□□□ 1.32
PCF11-207ENST00000624931 USP32Q8NFA0 1604 aa23.32■■□□□ 1.32
PCF11-207ENST00000624931 NUDT16Q96DE0 195 aaKnown RBP23.31■■□□□ 1.32
PCF11-207ENST00000624931 PPIP5K1Q6PFW1 1433 aa23.31■■□□□ 1.32
PCF11-207ENST00000624931 TOPAZ1Q8N9V7 1692 aa23.31■■□□□ 1.32
PCF11-207ENST00000624931 PDE3BQ13370 1112 aa23.29■■□□□ 1.32
PCF11-207ENST00000624931 INSRP06213 1382 aa23.28■■□□□ 1.32
PCF11-207ENST00000624931 NPC1L1Q9UHC9 1359 aa23.28■■□□□ 1.32
PCF11-207ENST00000624931 STRCP1A6NGW2 1772 aa23.28■■□□□ 1.32
PCF11-207ENST00000624931 CDC42BPGQ6DT37 1551 aa23.26■■□□□ 1.31
PCF11-207ENST00000624931 IPO9Q96P70 1041 aaKnown RBP23.26■■□□□ 1.31
PCF11-207ENST00000624931 FMN2Q9NZ56 1722 aa23.26■■□□□ 1.31
PCF11-207ENST00000624931 NKTRP30414 1462 aaKnown RBP23.26■■□□□ 1.31
PCF11-207ENST00000624931 RGPD8O14715 1765 aaPredicted RBP23.25■■□□□ 1.31
PCF11-207ENST00000624931 TERF2IPQ9NYB0 399 aa23.25■■□□□ 1.31
PCF11-207ENST00000624931 ITSN1Q15811 1721 aa23.25■■□□□ 1.31
PCF11-207ENST00000624931 AKAP12Q02952 1782 aa23.23■■□□□ 1.31
PCF11-207ENST00000624931 HDGFL2Q7Z4V5 671 aaPredicted RBP23.23■■□□□ 1.31
PCF11-207ENST00000624931 CCDC61Q9Y6R9 512 aa23.23■■□□□ 1.31
PCF11-207ENST00000624931 PPP2R1AP30153 589 aa23.22■■□□□ 1.31
PCF11-207ENST00000624931 NLRP13Q86W25 1043 aa23.22■■□□□ 1.31
PCF11-207ENST00000624931 CGNL1Q0VF96 1302 aa23.21■■□□□ 1.31
PCF11-207ENST00000624931 MON2Q7Z3U7 1717 aa23.21■■□□□ 1.31
PCF11-207ENST00000624931 CPSF1Q10570 1443 aaKnown RBP23.21■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms