RNA–Protein interactions for RNA: ENST00000622668.4

HDAC9-229, Transcript of histone deacetylase 9, human

TSL 2 BASIC

Gene HDAC9, Length 4,279 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC9-229	ENST00000622668	GORAB	Q5T7V8	394 aa		11.61	□□□□□ -0.55
HDAC9-229	ENST00000622668	C14orf93	Q9H972	538 aa	Known RBP	11.61	□□□□□ -0.55
HDAC9-229	ENST00000622668	HSP90AA1	P07900	732 aa	Known RBP	11.61	□□□□□ -0.55
HDAC9-229	ENST00000622668	EXOC5	O00471	708 aa		11.6	□□□□□ -0.55
HDAC9-229	ENST00000622668	MS4A1	P11836	297 aa		11.6	□□□□□ -0.55
HDAC9-229	ENST00000622668	RIPK4	P57078	832 aa		11.6	□□□□□ -0.55
HDAC9-229	ENST00000622668	CABP4	P57796	275 aa		11.6	□□□□□ -0.55
HDAC9-229	ENST00000622668	SPG7	Q9UQ90	795 aa		11.6	□□□□□ -0.55
HDAC9-229	ENST00000622668	RIMBP3C	A6NJZ7	1639 aa		11.6	□□□□□ -0.55
HDAC9-229	ENST00000622668	RIMBP3B	A6NNM3	1639 aa		11.6	□□□□□ -0.55
HDAC9-229	ENST00000622668	RIMBP3	Q9UFD9	1639 aa		11.6	□□□□□ -0.55
HDAC9-229	ENST00000622668	NME9	Q86XW9	330 aa		11.6	□□□□□ -0.55
HDAC9-229	ENST00000622668	CHMP4B	Q9H444	224 aa	Known RBP	11.6	□□□□□ -0.55
HDAC9-229	ENST00000622668	UPF2	Q9HAU5	1272 aa	Known RBP	11.6	□□□□□ -0.55
HDAC9-229	ENST00000622668	MAP3K1	Q13233	1512 aa		11.6	□□□□□ -0.55
HDAC9-229	ENST00000622668	KAT6B	Q8WYB5	2073 aa		11.6	□□□□□ -0.55
HDAC9-229	ENST00000622668	TCERG1	O14776	1098 aa	Known RBP	11.6	□□□□□ -0.55
HDAC9-229	ENST00000622668	BCL11B	Q9C0K0	894 aa	Predicted RBP	11.6	□□□□□ -0.55
HDAC9-229	ENST00000622668	IPO8	O15397	1037 aa	Known RBP	11.59	□□□□□ -0.55
HDAC9-229	ENST00000622668	LTK	P29376	864 aa		11.59	□□□□□ -0.55
HDAC9-229	ENST00000622668	SMC4	Q9NTJ3	1288 aa		11.59	□□□□□ -0.55
HDAC9-229	ENST00000622668	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	11.59	□□□□□ -0.55
HDAC9-229	ENST00000622668	AIMP1	Q12904	312 aa	Known RBP	11.58	□□□□□ -0.56
HDAC9-229	ENST00000622668	TSPYL4	Q9UJ04	414 aa		11.58	□□□□□ -0.56
HDAC9-229	ENST00000622668	ACE	P12821	1306 aa		11.58	□□□□□ -0.56
HDAC9-229	ENST00000622668	NEXN	Q0ZGT2	675 aa		11.58	□□□□□ -0.56
HDAC9-229	ENST00000622668	ORAI2	Q96SN7	254 aa		11.58	□□□□□ -0.56
HDAC9-229	ENST00000622668	TAOK2	Q9UL54	1235 aa		11.58	□□□□□ -0.56
HDAC9-229	ENST00000622668	APAF1	O14727	1248 aa		11.58	□□□□□ -0.56
HDAC9-229	ENST00000622668	KIF7	Q2M1P5	1343 aa		11.58	□□□□□ -0.56
HDAC9-229	ENST00000622668	ATP7A	Q04656	1500 aa		11.57	□□□□□ -0.56
HDAC9-229	ENST00000622668	USHBP1	Q8N6Y0	703 aa		11.57	□□□□□ -0.56
HDAC9-229	ENST00000622668	CLUAP1	Q96AJ1	413 aa		11.57	□□□□□ -0.56
HDAC9-229	ENST00000622668	MYBBP1A	Q9BQG0	1328 aa	Known RBP	11.57	□□□□□ -0.56
HDAC9-229	ENST00000622668	DDX17	Q92841	729 aa	Known RBP	11.56	□□□□□ -0.56
HDAC9-229	ENST00000622668	PTCD1	O75127	700 aa	Known RBP	11.56	□□□□□ -0.56
HDAC9-229	ENST00000622668	MPRIP	Q6WCQ1	1025 aa		11.56	□□□□□ -0.56
HDAC9-229	ENST00000622668	GAS2L2	Q8NHY3	880 aa		11.56	□□□□□ -0.56
HDAC9-229	ENST00000622668	GTF3C3	Q9Y5Q9	886 aa		11.56	□□□□□ -0.56
HDAC9-229	ENST00000622668	PRKAR2B	P31323	418 aa		11.56	□□□□□ -0.56
HDAC9-229	ENST00000622668	HDAC5	Q9UQL6	1122 aa		11.55	□□□□□ -0.56
HDAC9-229	ENST00000622668	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	11.55	□□□□□ -0.56
HDAC9-229	ENST00000622668	ITSN2	Q9NZM3	1697 aa		11.54	□□□□□ -0.56
HDAC9-229	ENST00000622668	ITPRIP	Q8IWB1	547 aa		11.54	□□□□□ -0.56
HDAC9-229	ENST00000622668	BCL2L13	Q9BXK5	485 aa		11.54	□□□□□ -0.56
HDAC9-229	ENST00000622668	FBXW7	Q969H0	707 aa		11.54	□□□□□ -0.56
HDAC9-229	ENST00000622668	CFAP65	Q6ZU64	1925 aa	Known RBP	11.53	□□□□□ -0.56
HDAC9-229	ENST00000622668	DDX58	O95786	925 aa	Known RBP	11.53	□□□□□ -0.56
HDAC9-229	ENST00000622668	KCNJ4	P48050	445 aa		11.53	□□□□□ -0.56
HDAC9-229	ENST00000622668	TMEM2	Q9UHN6	1383 aa		11.53	□□□□□ -0.56
HDAC9-229	ENST00000622668	ABCA8	O94911	1581 aa		11.53	□□□□□ -0.56
HDAC9-229	ENST00000622668	PTPRK	Q15262	1439 aa		11.53	□□□□□ -0.56
HDAC9-229	ENST00000622668	HSP90AB1	P08238	724 aa	Known RBP	11.52	□□□□□ -0.57
HDAC9-229	ENST00000622668	C9orf78	Q9NZ63	289 aa	Predicted RBP	11.52	□□□□□ -0.57
HDAC9-229	ENST00000622668	TMEM94	Q12767	1356 aa		11.52	□□□□□ -0.57
HDAC9-229	ENST00000622668	SUPT16H	Q9Y5B9	1047 aa	Known RBP	11.52	□□□□□ -0.57
HDAC9-229	ENST00000622668	FKBP5	Q13451	457 aa	Predicted RBP	11.51	□□□□□ -0.57
HDAC9-229	ENST00000622668	BICDL1	Q6ZP65	573 aa		11.51	□□□□□ -0.57
HDAC9-229	ENST00000622668	RIC3	Q7Z5B4	369 aa		11.51	□□□□□ -0.57
HDAC9-229	ENST00000622668	PRKRIP1	Q9H875	184 aa	Predicted RBP	11.51	□□□□□ -0.57
HDAC9-229	ENST00000622668	BTG4	Q9NY30	223 aa		11.51	□□□□□ -0.57
HDAC9-229	ENST00000622668	TMOD3	Q9NYL9	352 aa		11.51	□□□□□ -0.57
HDAC9-229	ENST00000622668	MAGI2	Q86UL8	1455 aa		11.51	□□□□□ -0.57
HDAC9-229	ENST00000622668	DDB1	Q16531	1140 aa		11.51	□□□□□ -0.57
HDAC9-229	ENST00000622668	WASHC2A	Q641Q2	1341 aa		11.5	□□□□□ -0.57
HDAC9-229	ENST00000622668	ACSBG1	Q96GR2	724 aa		11.5	□□□□□ -0.57
HDAC9-229	ENST00000622668	USP21	Q9UK80	565 aa		11.5	□□□□□ -0.57
HDAC9-229	ENST00000622668	ZCCHC11	Q5TAX3	1644 aa	Known RBP	11.49	□□□□□ -0.57
HDAC9-229	ENST00000622668	FGD1	P98174	961 aa		11.49	□□□□□ -0.57
HDAC9-229	ENST00000622668	CCDC7	Q96M83	1385 aa		11.49	□□□□□ -0.57
HDAC9-229	ENST00000622668	MAPKBP1	O60336	1514 aa		11.49	□□□□□ -0.57
HDAC9-229	ENST00000622668	RTL5	Q5HYW3	569 aa	Predicted RBP	11.49	□□□□□ -0.57
HDAC9-229	ENST00000622668	ZNF428	Q96B54	188 aa		11.49	□□□□□ -0.57
HDAC9-229	ENST00000622668	EMILIN1	Q9Y6C2	1016 aa		11.49	□□□□□ -0.57
HDAC9-229	ENST00000622668	ANKRD24	Q8TF21	1146 aa		11.49	□□□□□ -0.57
HDAC9-229	ENST00000622668	CCER2	I3L3R5	266 aa		11.48	□□□□□ -0.57
HDAC9-229	ENST00000622668	RGS3	P49796	1198 aa		11.48	□□□□□ -0.57
HDAC9-229	ENST00000622668	CERK	Q8TCT0	537 aa		11.48	□□□□□ -0.57
HDAC9-229	ENST00000622668	HMGB2	P26583	209 aa	Known RBP	11.48	□□□□□ -0.57
HDAC9-229	ENST00000622668	RUNDC1	Q96C34	613 aa		11.48	□□□□□ -0.57
HDAC9-229	ENST00000622668	NAP1L2	Q9ULW6	460 aa	Predicted RBP	11.48	□□□□□ -0.57
HDAC9-229	ENST00000622668	FBLN1	P23142	703 aa		11.47	□□□□□ -0.57
HDAC9-229	ENST00000622668	KIF6	Q6ZMV9	814 aa		11.47	□□□□□ -0.57
HDAC9-229	ENST00000622668	VPS37D	Q86XT2	251 aa		11.47	□□□□□ -0.57
HDAC9-229	ENST00000622668	SAMD9	Q5K651	1589 aa		11.47	□□□□□ -0.57
HDAC9-229	ENST00000622668	NSD3	Q9BZ95	1437 aa		11.47	□□□□□ -0.57
HDAC9-229	ENST00000622668	MAGI3	Q5TCQ9	1506 aa		11.47	□□□□□ -0.57
HDAC9-229	ENST00000622668	CLASP1	Q7Z460	1538 aa		11.47	□□□□□ -0.57
HDAC9-229	ENST00000622668	GNAI1	P63096	354 aa		11.46	□□□□□ -0.57
HDAC9-229	ENST00000622668	NPHP4	O75161	1426 aa	Predicted RBP	11.46	□□□□□ -0.57
HDAC9-229	ENST00000622668	GC	P02774	474 aa		11.46	□□□□□ -0.58
HDAC9-229	ENST00000622668	FAM98C	Q17RN3	349 aa	Known RBP	11.46	□□□□□ -0.58
HDAC9-229	ENST00000622668	NBPF14	Q5TI25	921 aa		11.46	□□□□□ -0.58
HDAC9-229	ENST00000622668	CASC1	Q6TDU7	716 aa		11.46	□□□□□ -0.58
HDAC9-229	ENST00000622668	PPP2R1A	P30153	589 aa		11.45	□□□□□ -0.58
HDAC9-229	ENST00000622668	TTC21B	Q7Z4L5	1316 aa		11.45	□□□□□ -0.58
HDAC9-229	ENST00000622668	MYL6B	P14649	208 aa		11.45	□□□□□ -0.58
HDAC9-229	ENST00000622668	TCP11L2	Q8N4U5	519 aa		11.45	□□□□□ -0.58
HDAC9-229	ENST00000622668	MLH3	Q9UHC1	1453 aa		11.44	□□□□□ -0.58
HDAC9-229	ENST00000622668	PHF14	O94880	888 aa		11.44	□□□□□ -0.58

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