RNA–Protein interactions for RNA: ENST00000621181.4

CLK1-215, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best) BASIC

Gene CLK1, Length 1,843 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-215ENST00000621181 PTCH1Q13635 1447 aa11.84□□□□□ -0.51
CLK1-215ENST00000621181 EP400Q96L91 3159 aa11.84□□□□□ -0.51
CLK1-215ENST00000621181 ORAI2Q96SN7 254 aa11.83□□□□□ -0.51
CLK1-215ENST00000621181 ROBO2Q9HCK4 1378 aa11.83□□□□□ -0.52
CLK1-215ENST00000621181 USP21Q9UK80 565 aa11.83□□□□□ -0.52
CLK1-215ENST00000621181 SOS2Q07890 1332 aaPredicted RBP11.83□□□□□ -0.52
CLK1-215ENST00000621181 TRPC5Q9UL62 973 aaPredicted RBP11.81□□□□□ -0.52
CLK1-215ENST00000621181 ATAD2Q6PL18 1390 aa11.81□□□□□ -0.52
CLK1-215ENST00000621181 LAMC1P11047 1609 aa11.8□□□□□ -0.52
CLK1-215ENST00000621181 HFM1A2PYH4 1435 aa11.8□□□□□ -0.52
CLK1-215ENST00000621181 NAIPQ13075 1403 aa11.8□□□□□ -0.52
CLK1-215ENST00000621181 RPGRIP1LQ68CZ1 1315 aa11.79□□□□□ -0.52
CLK1-215ENST00000621181 ESCO1Q5FWF5 840 aa11.79□□□□□ -0.52
CLK1-215ENST00000621181 FNBP4Q8N3X1 1017 aaPredicted RBP11.79□□□□□ -0.52
CLK1-215ENST00000621181 NPHP3Q7Z494 1330 aa11.78□□□□□ -0.52
CLK1-215ENST00000621181 SLC4A1APQ9BWU0 796 aaKnown RBP11.78□□□□□ -0.52
CLK1-215ENST00000621181 PRAG1Q86YV5 1406 aa11.78□□□□□ -0.52
CLK1-215ENST00000621181 FOXO3O43524 673 aa11.76□□□□□ -0.53
CLK1-215ENST00000621181 RRBP1Q9P2E9 1410 aaKnown RBP11.76□□□□□ -0.53
CLK1-215ENST00000621181 PPLO60437 1756 aa11.76□□□□□ -0.53
CLK1-215ENST00000621181 XPCQ01831 940 aaPredicted RBP11.76□□□□□ -0.53
CLK1-215ENST00000621181 COL22A1Q8NFW1 1626 aaPredicted RBP11.76□□□□□ -0.53
CLK1-215ENST00000621181 CDC42BPGQ6DT37 1551 aa11.75□□□□□ -0.53
CLK1-215ENST00000621181 MYOM2P54296 1465 aa11.75□□□□□ -0.53
CLK1-215ENST00000621181 ATRNO75882 1429 aa11.75□□□□□ -0.53
CLK1-215ENST00000621181 NUTM2FA1L443 756 aa11.74□□□□□ -0.53
CLK1-215ENST00000621181 ZRANB1Q9UGI0 708 aa11.74□□□□□ -0.53
CLK1-215ENST00000621181 LRPPRCP42704 1394 aaKnown RBP11.74□□□□□ -0.53
CLK1-215ENST00000621181 STK26Q9P289 416 aa11.74□□□□□ -0.53
CLK1-215ENST00000621181 PXDNQ92626 1479 aa11.73□□□□□ -0.53
CLK1-215ENST00000621181 BCL9LQ86UU0 1499 aa11.73□□□□□ -0.53
CLK1-215ENST00000621181 RGL3Q3MIN7 710 aa11.72□□□□□ -0.53
CLK1-215ENST00000621181 GJD4Q96KN9 370 aaPredicted RBP11.72□□□□□ -0.53
CLK1-215ENST00000621181 ADGRF5Q8IZF2 1346 aa11.72□□□□□ -0.53
CLK1-215ENST00000621181 WAPLQ7Z5K2 1190 aa11.72□□□□□ -0.53
CLK1-215ENST00000621181 CCDC125Q86Z20 511 aa11.72□□□□□ -0.53
CLK1-215ENST00000621181 CCDC144AA2RUR9 1427 aa11.71□□□□□ -0.53
CLK1-215ENST00000621181 MARF1Q9Y4F3 1742 aaKnown RBP11.71□□□□□ -0.53
CLK1-215ENST00000621181 TECPR2O15040 1411 aa11.7□□□□□ -0.54
CLK1-215ENST00000621181 ANKRD30BQ9BXX2 1392 aa11.69□□□□□ -0.54
CLK1-215ENST00000621181 HAP1P54257 671 aaPredicted RBP11.69□□□□□ -0.54
CLK1-215ENST00000621181 TMEM132EQ6IEE7 984 aa11.69□□□□□ -0.54
CLK1-215ENST00000621181 UNC5CLQ8IV45 518 aa11.69□□□□□ -0.54
CLK1-215ENST00000621181 ABCC11Q96J66 1382 aa11.68□□□□□ -0.54
CLK1-215ENST00000621181 PLEKHH1Q9ULM0 1364 aa11.67□□□□□ -0.54
CLK1-215ENST00000621181 SPATA31A3Q5VYP0 1347 aa11.67□□□□□ -0.54
CLK1-215ENST00000621181 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.67□□□□□ -0.54
CLK1-215ENST00000621181 RALGAPBQ86X10 1494 aa11.67□□□□□ -0.54
CLK1-215ENST00000621181 PLEKHG5O94827 1062 aa11.66□□□□□ -0.54
CLK1-215ENST00000621181 KRT28Q7Z3Y7 464 aa11.66□□□□□ -0.54
CLK1-215ENST00000621181 SLIT2O94813 1529 aa11.66□□□□□ -0.54
CLK1-215ENST00000621181 PIK3C2GO75747 1445 aa11.66□□□□□ -0.54
CLK1-215ENST00000621181 BLMP54132 1417 aaPredicted RBP11.66□□□□□ -0.54
CLK1-215ENST00000621181 SPATA31E1Q6ZUB1 1445 aa11.66□□□□□ -0.54
CLK1-215ENST00000621181 KIF1AQ12756 1690 aa11.66□□□□□ -0.54
CLK1-215ENST00000621181 KNDC1Q76NI1 1749 aa11.65□□□□□ -0.54
CLK1-215ENST00000621181 USP32Q8NFA0 1604 aa11.65□□□□□ -0.54
CLK1-215ENST00000621181 SF3B2Q13435 895 aaKnown RBP11.65□□□□□ -0.54
CLK1-215ENST00000621181 YTHDC2Q9H6S0 1430 aaKnown RBP11.65□□□□□ -0.54
CLK1-215ENST00000621181 FMN2Q9NZ56 1722 aa11.65□□□□□ -0.54
CLK1-215ENST00000621181 LMOD2Q6P5Q4 547 aa11.65□□□□□ -0.55
CLK1-215ENST00000621181 CCDC9Q9Y3X0 531 aaKnown RBP11.65□□□□□ -0.55
CLK1-215ENST00000621181 GLI3P10071 1580 aa11.64□□□□□ -0.55
CLK1-215ENST00000621181 IFT172Q9UG01 1749 aa11.64□□□□□ -0.55
CLK1-215ENST00000621181 PSME1Q06323 249 aa11.64□□□□□ -0.55
CLK1-215ENST00000621181 MPHOSPH9Q99550 1183 aa11.64□□□□□ -0.55
CLK1-215ENST00000621181 PHF8Q9UPP1 1060 aa11.64□□□□□ -0.55
CLK1-215ENST00000621181 TNS3Q68CZ2 1445 aa11.63□□□□□ -0.55
CLK1-215ENST00000621181 SEPT12Q8IYM1 358 aa11.63□□□□□ -0.55
CLK1-215ENST00000621181 CABLES1Q8TDN4 633 aa11.63□□□□□ -0.55
CLK1-215ENST00000621181 DEFB132Q7Z7B7 95 aa11.63□□□□□ -0.55
CLK1-215ENST00000621181 A0A0G2JS52 829 aa11.62□□□□□ -0.55
CLK1-215ENST00000621181 MYT1Q01538 1121 aa11.62□□□□□ -0.55
CLK1-215ENST00000621181 SAFB2Q14151 953 aaKnown RBP eCLIP11.62□□□□□ -0.55
CLK1-215ENST00000621181 VPS72Q15906 364 aa11.62□□□□□ -0.55
CLK1-215ENST00000621181 RGPD8O14715 1765 aaPredicted RBP11.62□□□□□ -0.55
CLK1-215ENST00000621181 BRWD3Q6RI45 1802 aa11.62□□□□□ -0.55
CLK1-215ENST00000621181 ARHGEF10O15013 1369 aa11.61□□□□□ -0.55
CLK1-215ENST00000621181 DHX57Q6P158 1386 aaKnown RBP11.61□□□□□ -0.55
CLK1-215ENST00000621181 KRT27Q7Z3Y8 459 aa11.6□□□□□ -0.55
CLK1-215ENST00000621181 SIRT1Q96EB6 747 aa11.6□□□□□ -0.55
CLK1-215ENST00000621181 CFAP70Q5T0N1 1121 aa11.6□□□□□ -0.55
CLK1-215ENST00000621181 PRAM1Q96QH2 718 aa11.6□□□□□ -0.55
CLK1-215ENST00000621181 C14orf93Q9H972 538 aaKnown RBP11.6□□□□□ -0.55
CLK1-215ENST00000621181 SBNO1A3KN83 1393 aa11.6□□□□□ -0.55
CLK1-215ENST00000621181 NRXN1Q9ULB1 1477 aa11.59□□□□□ -0.55
CLK1-215ENST00000621181 PLCH1Q4KWH8 1693 aa11.59□□□□□ -0.55
CLK1-215ENST00000621181 NWD2Q9ULI1 1742 aa11.59□□□□□ -0.55
CLK1-215ENST00000621181 PMFBP1Q8TBY8 1022 aa11.58□□□□□ -0.56
CLK1-215ENST00000621181 POGKQ9P215 609 aa11.58□□□□□ -0.56
CLK1-215ENST00000621181 FAM83GA6ND36 823 aa11.58□□□□□ -0.56
CLK1-215ENST00000621181 ONECUT3O60422 494 aaPredicted RBP11.58□□□□□ -0.56
CLK1-215ENST00000621181 ABCA3Q99758 1704 aa11.57□□□□□ -0.56
CLK1-215ENST00000621181 BAG6P46379 1132 aa11.56□□□□□ -0.56
CLK1-215ENST00000621181 ANKARQ7Z5J8 1434 aa11.56□□□□□ -0.56
CLK1-215ENST00000621181 FAM98CQ17RN3 349 aaKnown RBP11.56□□□□□ -0.56
CLK1-215ENST00000621181 BTG4Q9NY30 223 aa11.56□□□□□ -0.56
CLK1-215ENST00000621181 GPRASP1Q5JY77 1395 aa11.55□□□□□ -0.56
CLK1-215ENST00000621181 HIRIP3Q9BW71 556 aaPredicted RBP11.55□□□□□ -0.56
CLK1-215ENST00000621181 ACIN1Q9UKV3 1341 aaKnown RBP11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms