RNA–Protein interactions for RNA: ENST00000618534.4

NEK3-208, Transcript of NIMA related kinase 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene NEK3, Length 2,414 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-208ENST00000618534 FRAT2O75474 233 aaPredicted RBP26.27■■□□□ 1.8
NEK3-208ENST00000618534 MAPK8IP3Q9UPT6 1336 aa26.27■■□□□ 1.8
NEK3-208ENST00000618534 SETBP1Q9Y6X0 1596 aa26.27■■□□□ 1.8
NEK3-208ENST00000618534 IQSEC2Q5JU85 1478 aa26.26■■□□□ 1.8
NEK3-208ENST00000618534 ADGRB3O60242 1522 aa26.26■■□□□ 1.79
NEK3-208ENST00000618534 ZC3H13Q5T200 1668 aaKnown RBP26.26■■□□□ 1.79
NEK3-208ENST00000618534 RUNDC1Q96C34 613 aa26.26■■□□□ 1.79
NEK3-208ENST00000618534 TRAK1Q9UPV9 953 aa26.26■■□□□ 1.79
NEK3-208ENST00000618534 SLC12A5Q9H2X9 1139 aa26.25■■□□□ 1.79
NEK3-208ENST00000618534 BRPF3Q9ULD4 1205 aa26.25■■□□□ 1.79
NEK3-208ENST00000618534 SEC24BO95487 1268 aa26.25■■□□□ 1.79
NEK3-208ENST00000618534 QRICH2Q9H0J4 1663 aa26.25■■□□□ 1.79
NEK3-208ENST00000618534 CHGAP10645 457 aaKnown RBP26.24■■□□□ 1.79
NEK3-208ENST00000618534 RARSP54136 660 aaKnown RBP26.24■■□□□ 1.79
NEK3-208ENST00000618534 TCP11L2Q8N4U5 519 aa26.24■■□□□ 1.79
NEK3-208ENST00000618534 KIDINS220Q9ULH0 1771 aa26.23■■□□□ 1.79
NEK3-208ENST00000618534 LMTK2Q8IWU2 1503 aa26.21■■□□□ 1.79
NEK3-208ENST00000618534 PHF23Q9BUL5 403 aaPredicted RBP26.21■■□□□ 1.79
NEK3-208ENST00000618534 TNNQ9UQP3 1299 aa26.21■■□□□ 1.79
NEK3-208ENST00000618534 RLBP1P12271 317 aa26.19■■□□□ 1.78
NEK3-208ENST00000618534 ADGRB1O14514 1584 aa26.18■■□□□ 1.78
NEK3-208ENST00000618534 NLRP1Q9C000 1473 aa26.18■■□□□ 1.78
NEK3-208ENST00000618534 PPLO60437 1756 aa26.18■■□□□ 1.78
NEK3-208ENST00000618534 BCL2L13Q9BXK5 485 aa26.18■■□□□ 1.78
NEK3-208ENST00000618534 ZNF518AQ6AHZ1 1483 aa26.17■■□□□ 1.78
NEK3-208ENST00000618534 MTHFSP49914 203 aa26.17■■□□□ 1.78
NEK3-208ENST00000618534 C14orf93Q9H972 538 aaKnown RBP26.17■■□□□ 1.78
NEK3-208ENST00000618534 PCDHB15Q9Y5E8 787 aa26.17■■□□□ 1.78
NEK3-208ENST00000618534 USP32Q8NFA0 1604 aa26.17■■□□□ 1.78
NEK3-208ENST00000618534 WDR63Q8IWG1 891 aa26.17■■□□□ 1.78
NEK3-208ENST00000618534 TMEM132EQ6IEE7 984 aa26.16■■□□□ 1.78
NEK3-208ENST00000618534 PMFBP1Q8TBY8 1022 aa26.16■■□□□ 1.78
NEK3-208ENST00000618534 CFAP65Q6ZU64 1925 aaKnown RBP26.14■■□□□ 1.78
NEK3-208ENST00000618534 ANO8Q9HCE9 1232 aaPredicted RBP26.13■■□□□ 1.77
NEK3-208ENST00000618534 NPATQ14207 1427 aa26.13■■□□□ 1.77
NEK3-208ENST00000618534 AAMPQ13685 434 aa26.13■■□□□ 1.77
NEK3-208ENST00000618534 CCDC27Q2M243 656 aa26.12■■□□□ 1.77
NEK3-208ENST00000618534 CFAP53Q96M91 514 aa26.12■■□□□ 1.77
NEK3-208ENST00000618534 BECN1Q14457 450 aa26.1■■□□□ 1.77
NEK3-208ENST00000618534 PDZRN3Q9UPQ7 1066 aa26.1■■□□□ 1.77
NEK3-208ENST00000618534 ASXL2Q76L83 1435 aa26.09■■□□□ 1.77
NEK3-208ENST00000618534 SLKQ9H2G2 1235 aaPredicted RBP26.06■■□□□ 1.76
NEK3-208ENST00000618534 MYH16Q9H6N6 1097 aa26.06■■□□□ 1.76
NEK3-208ENST00000618534 ZMYM3Q14202 1370 aa26.06■■□□□ 1.76
NEK3-208ENST00000618534 GLI2P10070 1586 aa26.05■■□□□ 1.76
NEK3-208ENST00000618534 U2AF1L5P0DN76 240 aaPredicted RBP26.05■■□□□ 1.76
NEK3-208ENST00000618534 U2AF1Q01081 240 aaKnown RBP eCLIP26.05■■□□□ 1.76
NEK3-208ENST00000618534 TULP4Q9NRJ4 1543 aa26.05■■□□□ 1.76
NEK3-208ENST00000618534 RWDD1Q9H446 243 aaPredicted RBP26.05■■□□□ 1.76
NEK3-208ENST00000618534 GGT6Q6P531 493 aa26.04■■□□□ 1.76
NEK3-208ENST00000618534 ADGRB2O60241 1585 aa26.04■■□□□ 1.76
NEK3-208ENST00000618534 FRMPD1Q5SYB0 1578 aa26.04■■□□□ 1.76
NEK3-208ENST00000618534 TBC1D32Q96NH3 1257 aa26.04■■□□□ 1.76
NEK3-208ENST00000618534 ANKRD36BQ8N2N9 1353 aa26.03■■□□□ 1.76
NEK3-208ENST00000618534 UPF2Q9HAU5 1272 aaKnown RBP26.03■■□□□ 1.76
NEK3-208ENST00000618534 MVPQ14764 893 aaKnown RBP26.03■■□□□ 1.76
NEK3-208ENST00000618534 RPGRIP1LQ68CZ1 1315 aa26.02■■□□□ 1.76
NEK3-208ENST00000618534 EVC2Q86UK5 1308 aa26.02■■□□□ 1.76
NEK3-208ENST00000618534 ARHGEF28Q8N1W1 1705 aaKnown RBP26.02■■□□□ 1.76
NEK3-208ENST00000618534 NSD2O96028 1365 aa26.01■■□□□ 1.76
NEK3-208ENST00000618534 NUTM2DQ5VT03 806 aaPredicted RBP26.01■■□□□ 1.75
NEK3-208ENST00000618534 HECW2Q9P2P5 1572 aa26.01■■□□□ 1.75
NEK3-208ENST00000618534 POGKQ9P215 609 aa26■■□□□ 1.75
NEK3-208ENST00000618534 NCBP3Q53F19 620 aaKnown RBP25.99■■□□□ 1.75
NEK3-208ENST00000618534 ZKSCAN2Q63HK3 967 aa25.99■■□□□ 1.75
NEK3-208ENST00000618534 ANTXR1Q9H6X2 564 aa25.99■■□□□ 1.75
NEK3-208ENST00000618534 TSR2Q969E8 191 aaKnown RBP25.99■■□□□ 1.75
NEK3-208ENST00000618534 FTSJ3Q8IY81 847 aaKnown RBP25.98■■□□□ 1.75
NEK3-208ENST00000618534 CABP2Q9NPB3 220 aa25.98■■□□□ 1.75
NEK3-208ENST00000618534 ABCC3O15438 1527 aa25.97■■□□□ 1.75
NEK3-208ENST00000618534 DZIP1LQ8IYY4 767 aaKnown RBP25.97■■□□□ 1.75
NEK3-208ENST00000618534 PUS7Q96PZ0 661 aaKnown RBP25.97■■□□□ 1.75
NEK3-208ENST00000618534 TBC1D2Q9BYX2 928 aa25.97■■□□□ 1.75
NEK3-208ENST00000618534 POGZQ7Z3K3 1410 aa25.96■■□□□ 1.75
NEK3-208ENST00000618534 CAMSAP1Q5T5Y3 1602 aa25.95■■□□□ 1.75
NEK3-208ENST00000618534 SIGLEC1Q9BZZ2 1709 aa25.94■■□□□ 1.74
NEK3-208ENST00000618534 SAFB2Q14151 953 aaKnown RBP eCLIP25.94■■□□□ 1.74
NEK3-208ENST00000618534 SMC4Q9NTJ3 1288 aa25.94■■□□□ 1.74
NEK3-208ENST00000618534 CD109Q6YHK3 1445 aa25.93■■□□□ 1.74
NEK3-208ENST00000618534 EXOSC9Q06265 439 aaKnown RBP25.93■■□□□ 1.74
NEK3-208ENST00000618534 NEXMIFQ5QGS0 1516 aa25.93■■□□□ 1.74
NEK3-208ENST00000618534 MLH3Q9UHC1 1453 aa25.93■■□□□ 1.74
NEK3-208ENST00000618534 U2SURPO15042 1029 aaKnown RBP25.92■■□□□ 1.74
NEK3-208ENST00000618534 CT47B1P0C2W7 299 aaPredicted RBP25.92■■□□□ 1.74
NEK3-208ENST00000618534 A0A1W2PP64 1363 aa25.91■■□□□ 1.74
NEK3-208ENST00000618534 PLEKHF1Q96S99 279 aa25.91■■□□□ 1.74
NEK3-208ENST00000618534 TRIM27P14373 513 aa25.9■■□□□ 1.74
NEK3-208ENST00000618534 ABCC11Q96J66 1382 aa25.9■■□□□ 1.74
NEK3-208ENST00000618534 VGFO15240 615 aaPredicted RBP25.9■■□□□ 1.74
NEK3-208ENST00000618534 ZBTB4Q9P1Z0 1013 aaPredicted RBP25.9■■□□□ 1.74
NEK3-208ENST00000618534 PIK3C2BO00750 1634 aa25.9■■□□□ 1.74
NEK3-208ENST00000618534 TMPOP42166 694 aaKnown RBP25.89■■□□□ 1.74
NEK3-208ENST00000618534 TRIM35Q9UPQ4 493 aa25.89■■□□□ 1.73
NEK3-208ENST00000618534 COL3A1P02461 1466 aaPredicted RBP25.89■■□□□ 1.73
NEK3-208ENST00000618534 SSH1Q8WYL5 1049 aa25.88■■□□□ 1.73
NEK3-208ENST00000618534 GGNBP2Q9H3C7 697 aa25.88■■□□□ 1.73
NEK3-208ENST00000618534 CFAP74Q9C0B2 1584 aa25.87■■□□□ 1.73
NEK3-208ENST00000618534 ITPRIPQ8IWB1 547 aa25.87■■□□□ 1.73
NEK3-208ENST00000618534 HDAC1Q13547 482 aaPredicted RBP25.86■■□□□ 1.73
NEK3-208ENST00000618534 SPRYD3Q8NCJ5 442 aa25.85■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 102.3 ms