RNA–Protein interactions for RNA: ENST00000618207.4

CIITA-212, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5 BASIC

Gene CIITA, Length 2,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-212ENST00000618207 SBNO2Q9Y2G9 1366 aa16.41■□□□□ 0.22
CIITA-212ENST00000618207 MYO3AQ8NEV4 1616 aa16.38■□□□□ 0.21
CIITA-212ENST00000618207 ZC3H13Q5T200 1668 aaKnown RBP16.38■□□□□ 0.21
CIITA-212ENST00000618207 RRP7AQ9Y3A4 280 aaKnown RBP16.37■□□□□ 0.21
CIITA-212ENST00000618207 WAPLQ7Z5K2 1190 aa16.37■□□□□ 0.21
CIITA-212ENST00000618207 NPC1L1Q9UHC9 1359 aa16.37■□□□□ 0.21
CIITA-212ENST00000618207 CLTCQ00610 1675 aaKnown RBP16.37■□□□□ 0.21
CIITA-212ENST00000618207 MTHFSP49914 203 aa16.37■□□□□ 0.21
CIITA-212ENST00000618207 ZMYM4Q5VZL5 1548 aa16.36■□□□□ 0.21
CIITA-212ENST00000618207 TMEM131LA2VDJ0 1609 aa16.36■□□□□ 0.21
CIITA-212ENST00000618207 GOLGA2Q08379 1002 aa16.36■□□□□ 0.21
CIITA-212ENST00000618207 GGNBP2Q9H3C7 697 aa16.36■□□□□ 0.21
CIITA-212ENST00000618207 SPINK5Q9NQ38 1064 aaPredicted RBP16.36■□□□□ 0.21
CIITA-212ENST00000618207 CGNL1Q0VF96 1302 aa16.36■□□□□ 0.21
CIITA-212ENST00000618207 ARHGEF28Q8N1W1 1705 aaKnown RBP16.35■□□□□ 0.21
CIITA-212ENST00000618207 TULP4Q9NRJ4 1543 aa16.34■□□□□ 0.21
CIITA-212ENST00000618207 C20orf194Q5TEA3 1177 aa16.34■□□□□ 0.21
CIITA-212ENST00000618207 DMRT2Q9Y5R5 561 aa16.34■□□□□ 0.21
CIITA-212ENST00000618207 DUSP27Q5VZP5 1158 aa16.33■□□□□ 0.21
CIITA-212ENST00000618207 YTHDC2Q9H6S0 1430 aaKnown RBP16.32■□□□□ 0.2
CIITA-212ENST00000618207 CRBNQ96SW2 442 aa16.32■□□□□ 0.2
CIITA-212ENST00000618207 CDK19Q9BWU1 502 aa16.31■□□□□ 0.2
CIITA-212ENST00000618207 KIF13AQ9H1H9 1805 aa16.3■□□□□ 0.2
CIITA-212ENST00000618207 A0A1W2PP64 1363 aa16.3■□□□□ 0.2
CIITA-212ENST00000618207 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.3■□□□□ 0.2
CIITA-212ENST00000618207 CABP1Q9NZU7 370 aa16.3■□□□□ 0.2
CIITA-212ENST00000618207 FBLN1P23142 703 aa16.29■□□□□ 0.2
CIITA-212ENST00000618207 CEBPAP49715 358 aaPredicted RBP16.29■□□□□ 0.2
CIITA-212ENST00000618207 ANKRD36BQ8N2N9 1353 aa16.29■□□□□ 0.2
CIITA-212ENST00000618207 ZMYM3Q14202 1370 aa16.29■□□□□ 0.2
CIITA-212ENST00000618207 TXNDC2Q86VQ3 553 aa16.28■□□□□ 0.2
CIITA-212ENST00000618207 SKAP1Q86WV1 359 aa16.28■□□□□ 0.2
CIITA-212ENST00000618207 ZNF521Q96K83 1311 aa16.28■□□□□ 0.2
CIITA-212ENST00000618207 U2AF1L5P0DN76 240 aaPredicted RBP16.28■□□□□ 0.2
CIITA-212ENST00000618207 U2AF1Q01081 240 aaKnown RBP eCLIP16.28■□□□□ 0.2
CIITA-212ENST00000618207 SLFN5Q08AF3 891 aa16.28■□□□□ 0.2
CIITA-212ENST00000618207 ZFYVE9O95405 1425 aa16.28■□□□□ 0.2
CIITA-212ENST00000618207 RIMS2Q9UQ26 1411 aa16.28■□□□□ 0.2
CIITA-212ENST00000618207 INSRP06213 1382 aa16.28■□□□□ 0.2
CIITA-212ENST00000618207 ALKQ9UM73 1620 aa16.27■□□□□ 0.2
CIITA-212ENST00000618207 U2SURPO15042 1029 aaKnown RBP16.27■□□□□ 0.2
CIITA-212ENST00000618207 PPM1GO15355 546 aaPredicted RBP16.27■□□□□ 0.2
CIITA-212ENST00000618207 PTPRMP28827 1452 aa16.27■□□□□ 0.19
CIITA-212ENST00000618207 CFAP53Q96M91 514 aa16.27■□□□□ 0.19
CIITA-212ENST00000618207 A2ML1A8K2U0 1454 aa16.26■□□□□ 0.19
CIITA-212ENST00000618207 POLR3AO14802 1390 aaPredicted RBP16.26■□□□□ 0.19
CIITA-212ENST00000618207 TCP11L2Q8N4U5 519 aa16.26■□□□□ 0.19
CIITA-212ENST00000618207 BCAR3O75815 825 aa16.25■□□□□ 0.19
CIITA-212ENST00000618207 TERF2IPQ9NYB0 399 aa16.25■□□□□ 0.19
CIITA-212ENST00000618207 PPP6R1Q9UPN7 881 aa16.25■□□□□ 0.19
CIITA-212ENST00000618207 NCKAP5LQ9HCH0 1330 aa16.25■□□□□ 0.19
CIITA-212ENST00000618207 NUTM2FA1L443 756 aa16.24■□□□□ 0.19
CIITA-212ENST00000618207 AGLP35573 1532 aa16.24■□□□□ 0.19
CIITA-212ENST00000618207 FYB1O15117 783 aa16.24■□□□□ 0.19
CIITA-212ENST00000618207 WWC1Q8IX03 1113 aa16.23■□□□□ 0.19
CIITA-212ENST00000618207 HDGFL2Q7Z4V5 671 aaPredicted RBP16.23■□□□□ 0.19
CIITA-212ENST00000618207 DAXXQ9UER7 740 aaPredicted RBP16.23■□□□□ 0.19
CIITA-212ENST00000618207 TRHP20396 242 aaPredicted RBP16.23■□□□□ 0.19
CIITA-212ENST00000618207 RUNDC1Q96C34 613 aa16.22■□□□□ 0.19
CIITA-212ENST00000618207 METP08581 1390 aa16.22■□□□□ 0.19
CIITA-212ENST00000618207 ATAD2Q6PL18 1390 aa16.21■□□□□ 0.19
CIITA-212ENST00000618207 ARHGEF40Q8TER5 1519 aa16.21■□□□□ 0.18
CIITA-212ENST00000618207 E9PSI1 815 aa16.2■□□□□ 0.18
CIITA-212ENST00000618207 PUS7Q96PZ0 661 aaKnown RBP16.2■□□□□ 0.18
CIITA-212ENST00000618207 MSH5O43196 834 aa16.2■□□□□ 0.18
CIITA-212ENST00000618207 SPATA31D1Q6ZQQ2 1576 aa16.2■□□□□ 0.18
CIITA-212ENST00000618207 BCL2L13Q9BXK5 485 aa16.19■□□□□ 0.18
CIITA-212ENST00000618207 REREQ9P2R6 1566 aa16.19■□□□□ 0.18
CIITA-212ENST00000618207 FRAT1Q92837 279 aaPredicted RBP16.18■□□□□ 0.18
CIITA-212ENST00000618207 ABCC11Q96J66 1382 aa16.18■□□□□ 0.18
CIITA-212ENST00000618207 CANXP27824 592 aaKnown RBP16.18■□□□□ 0.18
CIITA-212ENST00000618207 SLC26A8Q96RN1 970 aa16.18■□□□□ 0.18
CIITA-212ENST00000618207 TNRQ92752 1358 aa16.18■□□□□ 0.18
CIITA-212ENST00000618207 SHPRHQ149N8 1683 aa16.17■□□□□ 0.18
CIITA-212ENST00000618207 ZRANB1Q9UGI0 708 aa16.17■□□□□ 0.18
CIITA-212ENST00000618207 TRMT2AQ8IZ69 625 aaKnown RBP16.17■□□□□ 0.18
CIITA-212ENST00000618207 NKTRP30414 1462 aaKnown RBP16.16■□□□□ 0.18
CIITA-212ENST00000618207 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.16■□□□□ 0.18
CIITA-212ENST00000618207 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.16■□□□□ 0.18
CIITA-212ENST00000618207 CD163L1Q9NR16 1453 aa16.16■□□□□ 0.18
CIITA-212ENST00000618207 WASLO00401 505 aaPredicted RBP16.14■□□□□ 0.17
CIITA-212ENST00000618207 LTKP29376 864 aa16.14■□□□□ 0.17
CIITA-212ENST00000618207 NSD2O96028 1365 aa16.14■□□□□ 0.17
CIITA-212ENST00000618207 NPM2Q86SE8 214 aaKnown RBP16.14■□□□□ 0.17
CIITA-212ENST00000618207 NME9Q86XW9 330 aa16.14■□□□□ 0.17
CIITA-212ENST00000618207 HDGFP51858 240 aaKnown RBP16.13■□□□□ 0.17
CIITA-212ENST00000618207 TSR2Q969E8 191 aaKnown RBP16.13■□□□□ 0.17
CIITA-212ENST00000618207 NUDT16Q96DE0 195 aaKnown RBP16.13■□□□□ 0.17
CIITA-212ENST00000618207 NINLQ9Y2I6 1382 aa16.12■□□□□ 0.17
CIITA-212ENST00000618207 PANK1Q8TE04 598 aa16.12■□□□□ 0.17
CIITA-212ENST00000618207 USP32Q8NFA0 1604 aa16.12■□□□□ 0.17
CIITA-212ENST00000618207 DIAPH1O60610 1272 aaKnown RBP16.11■□□□□ 0.17
CIITA-212ENST00000618207 MAPK8IP3Q9UPT6 1336 aa16.11■□□□□ 0.17
CIITA-212ENST00000618207 SOX12O15370 315 aa16.11■□□□□ 0.17
CIITA-212ENST00000618207 EIF5BO60841 1220 aaKnown RBP16.11■□□□□ 0.17
CIITA-212ENST00000618207 HMOX1P09601 288 aa16.11■□□□□ 0.17
CIITA-212ENST00000618207 CLUAP1Q96AJ1 413 aa16.11■□□□□ 0.17
CIITA-212ENST00000618207 TNNQ9UQP3 1299 aa16.11■□□□□ 0.17
CIITA-212ENST00000618207 COG6Q9Y2V7 657 aa16.11■□□□□ 0.17
CIITA-212ENST00000618207 EMILIN1Q9Y6C2 1016 aa16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms