RNA–Protein interactions for RNA: ENST00000613073.4

CNOT3-208, Transcript of CCR4-NOT transcription complex subunit 3, humanhuman

TSL 2

Gene CNOT3, Length 2,778 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT3-208ENST00000613073 BLMP54132 1417 aaPredicted RBP21.72■■□□□ 1.07
CNOT3-208ENST00000613073 NPC1L1Q9UHC9 1359 aa21.72■■□□□ 1.07
CNOT3-208ENST00000613073 KIF13AQ9H1H9 1805 aa21.71■■□□□ 1.07
CNOT3-208ENST00000613073 CLTCQ00610 1675 aaKnown RBP21.7■■□□□ 1.07
CNOT3-208ENST00000613073 EIF5BO60841 1220 aaKnown RBP21.7■■□□□ 1.06
CNOT3-208ENST00000613073 TNNT2P45379 298 aaPredicted RBP21.7■■□□□ 1.06
CNOT3-208ENST00000613073 CABP2Q9NPB3 220 aa21.7■■□□□ 1.06
CNOT3-208ENST00000613073 NSD3Q9BZ95 1437 aa21.69■■□□□ 1.06
CNOT3-208ENST00000613073 RNF123Q5XPI4 1314 aa21.68■■□□□ 1.06
CNOT3-208ENST00000613073 EVC2Q86UK5 1308 aa21.68■■□□□ 1.06
CNOT3-208ENST00000613073 ZFYVE9O95405 1425 aa21.68■■□□□ 1.06
CNOT3-208ENST00000613073 AGLP35573 1532 aa21.68■■□□□ 1.06
CNOT3-208ENST00000613073 ARHGEF28Q8N1W1 1705 aaKnown RBP21.67■■□□□ 1.06
CNOT3-208ENST00000613073 PDE3BQ13370 1112 aa21.66■■□□□ 1.06
CNOT3-208ENST00000613073 REREQ9P2R6 1566 aa21.66■■□□□ 1.06
CNOT3-208ENST00000613073 CCDC146Q8IYE0 955 aa21.66■■□□□ 1.06
CNOT3-208ENST00000613073 BRPF3Q9ULD4 1205 aa21.66■■□□□ 1.06
CNOT3-208ENST00000613073 PPP6R1Q9UPN7 881 aa21.66■■□□□ 1.06
CNOT3-208ENST00000613073 ESF1Q9H501 851 aaKnown RBP21.65■■□□□ 1.06
CNOT3-208ENST00000613073 RCAN3Q9UKA8 241 aa21.65■■□□□ 1.06
CNOT3-208ENST00000613073 PRAM1Q96QH2 718 aa21.64■■□□□ 1.05
CNOT3-208ENST00000613073 INSRP06213 1382 aa21.64■■□□□ 1.05
CNOT3-208ENST00000613073 MINK1Q8N4C8 1332 aaPredicted RBP21.64■■□□□ 1.05
CNOT3-208ENST00000613073 MORC1Q86VD1 984 aa21.64■■□□□ 1.05
CNOT3-208ENST00000613073 TULP4Q9NRJ4 1543 aa21.63■■□□□ 1.05
CNOT3-208ENST00000613073 SRPK2P78362 688 aaKnown RBP21.63■■□□□ 1.05
CNOT3-208ENST00000613073 POGKQ9P215 609 aa21.63■■□□□ 1.05
CNOT3-208ENST00000613073 UBE2Q2Q8WVN8 375 aa21.62■■□□□ 1.05
CNOT3-208ENST00000613073 ARHGEF40Q8TER5 1519 aa21.6■■□□□ 1.05
CNOT3-208ENST00000613073 PLEKHH1Q9ULM0 1364 aa21.6■■□□□ 1.05
CNOT3-208ENST00000613073 YTHDC2Q9H6S0 1430 aaKnown RBP21.59■■□□□ 1.05
CNOT3-208ENST00000613073 RRP1P56182 461 aaKnown RBP21.59■■□□□ 1.05
CNOT3-208ENST00000613073 A2ML1A8K2U0 1454 aa21.58■■□□□ 1.04
CNOT3-208ENST00000613073 ZMYM3Q14202 1370 aa21.57■■□□□ 1.04
CNOT3-208ENST00000613073 CGNL1Q0VF96 1302 aa21.57■■□□□ 1.04
CNOT3-208ENST00000613073 ALKQ9UM73 1620 aa21.57■■□□□ 1.04
CNOT3-208ENST00000613073 PTPRMP28827 1452 aa21.57■■□□□ 1.04
CNOT3-208ENST00000613073 SPATA31D1Q6ZQQ2 1576 aa21.56■■□□□ 1.04
CNOT3-208ENST00000613073 APAF1O14727 1248 aa21.56■■□□□ 1.04
CNOT3-208ENST00000613073 RIMS2Q9UQ26 1411 aa21.55■■□□□ 1.04
CNOT3-208ENST00000613073 ANKRD36BQ8N2N9 1353 aa21.55■■□□□ 1.04
CNOT3-208ENST00000613073 PUS7Q96PZ0 661 aaKnown RBP21.54■■□□□ 1.04
CNOT3-208ENST00000613073 PLIN1O60240 522 aa21.53■■□□□ 1.04
CNOT3-208ENST00000613073 WAPLQ7Z5K2 1190 aa21.53■■□□□ 1.04
CNOT3-208ENST00000613073 MTHFSP49914 203 aa21.52■■□□□ 1.03
CNOT3-208ENST00000613073 EXOC6Q8TAG9 804 aa21.51■■□□□ 1.03
CNOT3-208ENST00000613073 A0A1W2PP64 1363 aa21.51■■□□□ 1.03
CNOT3-208ENST00000613073 GOLGA2Q08379 1002 aa21.5■■□□□ 1.03
CNOT3-208ENST00000613073 CDK19Q9BWU1 502 aa21.5■■□□□ 1.03
CNOT3-208ENST00000613073 POLR3AO14802 1390 aaPredicted RBP21.5■■□□□ 1.03
CNOT3-208ENST00000613073 PDE4AP27815 886 aa21.5■■□□□ 1.03
CNOT3-208ENST00000613073 ZNF521Q96K83 1311 aa21.5■■□□□ 1.03
CNOT3-208ENST00000613073 DUSP27Q5VZP5 1158 aa21.48■■□□□ 1.03
CNOT3-208ENST00000613073 USP35Q9P2H5 1018 aa21.48■■□□□ 1.03
CNOT3-208ENST00000613073 PLPPR3Q6T4P5 718 aa21.48■■□□□ 1.03
CNOT3-208ENST00000613073 GGNBP2Q9H3C7 697 aa21.48■■□□□ 1.03
CNOT3-208ENST00000613073 SPINK5Q9NQ38 1064 aaPredicted RBP21.46■■□□□ 1.03
CNOT3-208ENST00000613073 CABP1Q9NZU7 370 aa21.46■■□□□ 1.03
CNOT3-208ENST00000613073 ATAD2Q6PL18 1390 aa21.46■■□□□ 1.03
CNOT3-208ENST00000613073 NEUROD2Q15784 382 aa21.45■■□□□ 1.02
CNOT3-208ENST00000613073 SKAP1Q86WV1 359 aa21.45■■□□□ 1.02
CNOT3-208ENST00000613073 PPM1GO15355 546 aaPredicted RBP21.44■■□□□ 1.02
CNOT3-208ENST00000613073 CEBPAP49715 358 aaPredicted RBP21.44■■□□□ 1.02
CNOT3-208ENST00000613073 TERF2IPQ9NYB0 399 aa21.44■■□□□ 1.02
CNOT3-208ENST00000613073 USP32Q8NFA0 1604 aa21.44■■□□□ 1.02
CNOT3-208ENST00000613073 TNRQ92752 1358 aa21.44■■□□□ 1.02
CNOT3-208ENST00000613073 SLC4A3P48751 1232 aa21.44■■□□□ 1.02
CNOT3-208ENST00000613073 SLFN5Q08AF3 891 aa21.43■■□□□ 1.02
CNOT3-208ENST00000613073 METP08581 1390 aa21.43■■□□□ 1.02
CNOT3-208ENST00000613073 GSE1Q14687 1217 aa21.43■■□□□ 1.02
CNOT3-208ENST00000613073 TXNDC2Q86VQ3 553 aa21.43■■□□□ 1.02
CNOT3-208ENST00000613073 RRP7AQ9Y3A4 280 aaKnown RBP21.43■■□□□ 1.02
CNOT3-208ENST00000613073 DMRT2Q9Y5R5 561 aa21.43■■□□□ 1.02
CNOT3-208ENST00000613073 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.42■■□□□ 1.023e-6■■□□□ 14.2
CNOT3-208ENST00000613073 CFAP53Q96M91 514 aa21.42■■□□□ 1.02
CNOT3-208ENST00000613073 NINLQ9Y2I6 1382 aa21.42■■□□□ 1.02
CNOT3-208ENST00000613073 ABCC11Q96J66 1382 aa21.41■■□□□ 1.02
CNOT3-208ENST00000613073 FYB1O15117 783 aa21.41■■□□□ 1.02
CNOT3-208ENST00000613073 NSD2O96028 1365 aa21.4■■□□□ 1.02
CNOT3-208ENST00000613073 CD163L1Q9NR16 1453 aa21.4■■□□□ 1.02
CNOT3-208ENST00000613073 HDGFL2Q7Z4V5 671 aaPredicted RBP21.4■■□□□ 1.02
CNOT3-208ENST00000613073 BACH2Q9BYV9 841 aa21.4■■□□□ 1.02
CNOT3-208ENST00000613073 SHPRHQ149N8 1683 aa21.4■■□□□ 1.02
CNOT3-208ENST00000613073 TCERG1O14776 1098 aaKnown RBP21.39■■□□□ 1.02
CNOT3-208ENST00000613073 C20orf194Q5TEA3 1177 aa21.39■■□□□ 1.01
CNOT3-208ENST00000613073 FRAT1Q92837 279 aaPredicted RBP21.39■■□□□ 1.01
CNOT3-208ENST00000613073 SETD1AO15047 1707 aaKnown RBP21.38■■□□□ 1.01
CNOT3-208ENST00000613073 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.38■■□□□ 1.01
CNOT3-208ENST00000613073 CRBNQ96SW2 442 aa21.38■■□□□ 1.01
CNOT3-208ENST00000613073 U2AF1L5P0DN76 240 aaPredicted RBP21.37■■□□□ 1.01
CNOT3-208ENST00000613073 TRHP20396 242 aaPredicted RBP21.37■■□□□ 1.01
CNOT3-208ENST00000613073 U2AF1Q01081 240 aaKnown RBP eCLIP21.37■■□□□ 1.01
CNOT3-208ENST00000613073 NRXN3Q9Y4C0 1643 aa21.37■■□□□ 1.01
CNOT3-208ENST00000613073 HDGFP51858 240 aaKnown RBP21.37■■□□□ 1.01
CNOT3-208ENST00000613073 RUNDC1Q96C34 613 aa21.37■■□□□ 1.01
CNOT3-208ENST00000613073 WWC1Q8IX03 1113 aa21.36■■□□□ 1.01
CNOT3-208ENST00000613073 TCP11L2Q8N4U5 519 aa21.36■■□□□ 1.01
CNOT3-208ENST00000613073 NFKBIBQ15653 356 aa21.36■■□□□ 1.01
CNOT3-208ENST00000613073 TRMT2AQ8IZ69 625 aaKnown RBP21.36■■□□□ 1.01
CNOT3-208ENST00000613073 TMEM2Q9UHN6 1383 aa21.34■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms