RNA–Protein interactions for RNA: ENST00000612672.1

MMP28-203, Transcript of matrix metallopeptidase 28, humanhuman

TSL 1 (best) BASIC

Gene MMP28, Length 1,092 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28-203ENST00000612672 MYOM2P54296 1465 aa35.56■■■■□ 3.28
MMP28-203ENST00000612672 PXDNQ92626 1479 aa35.55■■■■□ 3.28
MMP28-203ENST00000612672 USP21Q9UK80 565 aa35.54■■■■□ 3.28
MMP28-203ENST00000612672 ATRNO75882 1429 aa35.54■■■■□ 3.28
MMP28-203ENST00000612672 RPGRIP1LQ68CZ1 1315 aa35.52■■■■□ 3.28
MMP28-203ENST00000612672 IFT172Q9UG01 1749 aa35.52■■■■□ 3.28
MMP28-203ENST00000612672 FNBP4Q8N3X1 1017 aaPredicted RBP35.51■■■■□ 3.28
MMP28-203ENST00000612672 FOXD1Q16676 465 aa35.47■■■■□ 3.27
MMP28-203ENST00000612672 SLC4A1APQ9BWU0 796 aaKnown RBP35.47■■■■□ 3.27
MMP28-203ENST00000612672 ATAD2Q6PL18 1390 aa35.47■■■■□ 3.27
MMP28-203ENST00000612672 TRPC5Q9UL62 973 aaPredicted RBP35.46■■■■□ 3.27
MMP28-203ENST00000612672 ADGRF5Q8IZF2 1346 aa35.46■■■■□ 3.27
MMP28-203ENST00000612672 BCL9LQ86UU0 1499 aa35.46■■■■□ 3.27
MMP28-203ENST00000612672 KNDC1Q76NI1 1749 aa35.44■■■■□ 3.26
MMP28-203ENST00000612672 XPCQ01831 940 aaPredicted RBP35.44■■■■□ 3.26
MMP28-203ENST00000612672 ESCO1Q5FWF5 840 aa35.43■■■■□ 3.26
MMP28-203ENST00000612672 TECPR2O15040 1411 aa35.41■■■■□ 3.26
MMP28-203ENST00000612672 NPHP3Q7Z494 1330 aa35.41■■■■□ 3.26
MMP28-203ENST00000612672 FMN2Q9NZ56 1722 aa35.4■■■■□ 3.26
MMP28-203ENST00000612672 PLEKHH1Q9ULM0 1364 aa35.4■■■■□ 3.26
MMP28-203ENST00000612672 SPATA31E1Q6ZUB1 1445 aa35.4■■■■□ 3.26
MMP28-203ENST00000612672 WAPLQ7Z5K2 1190 aa35.39■■■■□ 3.26
MMP28-203ENST00000612672 TNKS1BP1Q9C0C2 1729 aaKnown RBP35.38■■■■□ 3.25
MMP28-203ENST00000612672 NUTM2FA1L443 756 aa35.37■■■■□ 3.25
MMP28-203ENST00000612672 FOXO3O43524 673 aa35.37■■■■□ 3.25
MMP28-203ENST00000612672 STK26Q9P289 416 aa35.35■■■■□ 3.25
MMP28-203ENST00000612672 LRPPRCP42704 1394 aaKnown RBP35.34■■■■□ 3.25
MMP28-203ENST00000612672 GLI3P10071 1580 aa35.34■■■■□ 3.25
MMP28-203ENST00000612672 RGPD8O14715 1765 aaPredicted RBP35.33■■■■□ 3.25
MMP28-203ENST00000612672 CCDC144AA2RUR9 1427 aa35.31■■■■□ 3.24
MMP28-203ENST00000612672 RGL3Q3MIN7 710 aa35.3■■■■□ 3.24
MMP28-203ENST00000612672 TMEM132EQ6IEE7 984 aa35.3■■■■□ 3.24
MMP28-203ENST00000612672 PIK3C2GO75747 1445 aa35.3■■■■□ 3.24
MMP28-203ENST00000612672 KIF1AQ12756 1690 aa35.3■■■■□ 3.24
MMP28-203ENST00000612672 BRWD3Q6RI45 1802 aa35.28■■■■□ 3.24
MMP28-203ENST00000612672 USP32Q8NFA0 1604 aa35.28■■■■□ 3.24
MMP28-203ENST00000612672 ABCC11Q96J66 1382 aa35.27■■■■□ 3.24
MMP28-203ENST00000612672 SLIT2O94813 1529 aa35.27■■■■□ 3.24
MMP28-203ENST00000612672 RALGAPBQ86X10 1494 aa35.24■■■■□ 3.23
MMP28-203ENST00000612672 GJD4Q96KN9 370 aaPredicted RBP35.24■■■■□ 3.23
MMP28-203ENST00000612672 ANKRD30BQ9BXX2 1392 aa35.24■■■■□ 3.23
MMP28-203ENST00000612672 YTHDC2Q9H6S0 1430 aaKnown RBP35.23■■■■□ 3.23
MMP28-203ENST00000612672 ABCA3Q99758 1704 aa35.23■■■■□ 3.23
MMP28-203ENST00000612672 SPATA31A3Q5VYP0 1347 aa35.22■■■■□ 3.23
MMP28-203ENST00000612672 PLCH1Q4KWH8 1693 aa35.19■■■■□ 3.22
MMP28-203ENST00000612672 UNC5CLQ8IV45 518 aa35.16■■■■□ 3.22
MMP28-203ENST00000612672 MPHOSPH9Q99550 1183 aa35.16■■■■□ 3.22
MMP28-203ENST00000612672 ZRANB1Q9UGI0 708 aa35.14■■■■□ 3.22
MMP28-203ENST00000612672 NRXN1Q9ULB1 1477 aa35.13■■■■□ 3.21
MMP28-203ENST00000612672 TNS3Q68CZ2 1445 aa35.13■■■■□ 3.21
MMP28-203ENST00000612672 KRT28Q7Z3Y7 464 aa35.12■■■■□ 3.21
MMP28-203ENST00000612672 NWD2Q9ULI1 1742 aa35.1■■■■□ 3.21
MMP28-203ENST00000612672 CCDC125Q86Z20 511 aa35.09■■■■□ 3.21
MMP28-203ENST00000612672 CABLES1Q8TDN4 633 aa35.09■■■■□ 3.21
MMP28-203ENST00000612672 BLMP54132 1417 aaPredicted RBP35.06■■■■□ 3.2
MMP28-203ENST00000612672 C14orf93Q9H972 538 aaKnown RBP35.05■■■■□ 3.2
MMP28-203ENST00000612672 PHF8Q9UPP1 1060 aa35.05■■■■□ 3.2
MMP28-203ENST00000612672 PLEKHG5O94827 1062 aa35.04■■■■□ 3.2
MMP28-203ENST00000612672 NRAPQ86VF7 1730 aa35.03■■■■□ 3.2
MMP28-203ENST00000612672 CFAP70Q5T0N1 1121 aa35.03■■■■□ 3.2
MMP28-203ENST00000612672 SIRT1Q96EB6 747 aa35.03■■■■□ 3.2
MMP28-203ENST00000612672 DEFB132Q7Z7B7 95 aa35.02■■■■□ 3.2
MMP28-203ENST00000612672 TRPM3Q9HCF6 1732 aaPredicted RBP35.02■■■■□ 3.2
MMP28-203ENST00000612672 SAFB2Q14151 953 aaKnown RBP eCLIP35■■■■□ 3.19
MMP28-203ENST00000612672 SEPT12Q8IYM1 358 aa34.99■■■■□ 3.19
MMP28-203ENST00000612672 ADGRB2O60241 1585 aa34.99■■■■□ 3.19
MMP28-203ENST00000612672 SBNO1A3KN83 1393 aa34.99■■■■□ 3.19
MMP28-203ENST00000612672 VPS72Q15906 364 aa34.98■■■■□ 3.19
MMP28-203ENST00000612672 PRAM1Q96QH2 718 aa34.97■■■■□ 3.19
MMP28-203ENST00000612672 DLC1Q96QB1 1528 aa34.96■■■■□ 3.19
MMP28-203ENST00000612672 ADGRB1O14514 1584 aa34.96■■■■□ 3.19
MMP28-203ENST00000612672 ALS2Q96Q42 1657 aa34.95■■■■□ 3.19
MMP28-203ENST00000612672 DHX57Q6P158 1386 aaKnown RBP34.95■■■■□ 3.19
MMP28-203ENST00000612672 HAP1P54257 671 aaPredicted RBP34.93■■■■□ 3.18
MMP28-203ENST00000612672 CRYBG1Q9Y4K1 1723 aa34.92■■■■□ 3.18
MMP28-203ENST00000612672 PSME1Q06323 249 aa34.92■■■■□ 3.18
MMP28-203ENST00000612672 PMFBP1Q8TBY8 1022 aa34.92■■■■□ 3.18
MMP28-203ENST00000612672 ONECUT3O60422 494 aaPredicted RBP34.91■■■■□ 3.18
MMP28-203ENST00000612672 ARHGEF10O15013 1369 aa34.9■■■■□ 3.18
MMP28-203ENST00000612672 LMOD2Q6P5Q4 547 aa34.9■■■■□ 3.18
MMP28-203ENST00000612672 ANKARQ7Z5J8 1434 aa34.89■■■■□ 3.18
MMP28-203ENST00000612672 FAM83GA6ND36 823 aa34.89■■■■□ 3.18
MMP28-203ENST00000612672 CCDC9Q9Y3X0 531 aaKnown RBP34.87■■■■□ 3.17
MMP28-203ENST00000612672 LRP5O75197 1615 aa34.85■■■■□ 3.17
MMP28-203ENST00000612672 PRR36Q9H6K5 1346 aa34.84■■■■□ 3.17
MMP28-203ENST00000612672 KRT27Q7Z3Y8 459 aa34.84■■■■□ 3.17
MMP28-203ENST00000612672 COL14A1Q05707 1796 aaKnown RBP34.84■■■■□ 3.17
MMP28-203ENST00000612672 HIRIP3Q9BW71 556 aaPredicted RBP34.82■■■■□ 3.16
MMP28-203ENST00000612672 POGKQ9P215 609 aa34.8■■■■□ 3.16
MMP28-203ENST00000612672 TULP4Q9NRJ4 1543 aa34.8■■■■□ 3.16
MMP28-203ENST00000612672 FAM98CQ17RN3 349 aaKnown RBP34.78■■■■□ 3.16
MMP28-203ENST00000612672 SF3B2Q13435 895 aaKnown RBP34.77■■■■□ 3.16
MMP28-203ENST00000612672 BTG4Q9NY30 223 aa34.77■■■■□ 3.16
MMP28-203ENST00000612672 TRAK1Q9UPV9 953 aa34.77■■■■□ 3.16
MMP28-203ENST00000612672 THSD7AQ9UPZ6 1657 aa34.76■■■■□ 3.16
MMP28-203ENST00000612672 MINK1Q8N4C8 1332 aaPredicted RBP34.76■■■■□ 3.15
MMP28-203ENST00000612672 ACIN1Q9UKV3 1341 aaKnown RBP34.75■■■■□ 3.15
MMP28-203ENST00000612672 RGPD1P0DJD0 1748 aa34.75■■■■□ 3.15
MMP28-203ENST00000612672 TNS1Q9HBL0 1735 aaKnown RBP34.75■■■■□ 3.15
MMP28-203ENST00000612672 ARHGEF28Q8N1W1 1705 aaKnown RBP34.73■■■■□ 3.15
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms