RNA–Protein interactions for RNA: ENST00000610489.1

SYNE1-240, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 1,754 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-240ENST00000610489 SIRT1Q96EB6 747 aa14.68□□□□□ -0.06
SYNE1-240ENST00000610489 TMEM94Q12767 1356 aa14.67□□□□□ -0.06
SYNE1-240ENST00000610489 RTN4Q9NQC3 1192 aaKnown RBP14.67□□□□□ -0.06
SYNE1-240ENST00000610489 PLEKHH1Q9ULM0 1364 aa14.67□□□□□ -0.06
SYNE1-240ENST00000610489 QRICH2Q9H0J4 1663 aa14.66□□□□□ -0.06
SYNE1-240ENST00000610489 EIF3AQ14152 1382 aaKnown RBP14.66□□□□□ -0.06
SYNE1-240ENST00000610489 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.66□□□□□ -0.06
SYNE1-240ENST00000610489 WAPLQ7Z5K2 1190 aa14.65□□□□□ -0.06
SYNE1-240ENST00000610489 PRAM1Q96QH2 718 aa14.65□□□□□ -0.06
SYNE1-240ENST00000610489 NCOA3Q9Y6Q9 1424 aa14.65□□□□□ -0.06
SYNE1-240ENST00000610489 RBM33Q96EV2 1170 aaKnown RBP14.65□□□□□ -0.06
SYNE1-240ENST00000610489 ADGRL3Q9HAR2 1447 aa14.64□□□□□ -0.07
SYNE1-240ENST00000610489 USP47Q96K76 1375 aa14.64□□□□□ -0.07
SYNE1-240ENST00000610489 POGKQ9P215 609 aa14.64□□□□□ -0.07
SYNE1-240ENST00000610489 SLC24A1O60721 1099 aa14.63□□□□□ -0.07
SYNE1-240ENST00000610489 IQSEC2Q5JU85 1478 aa14.63□□□□□ -0.07
SYNE1-240ENST00000610489 CENPJQ9HC77 1338 aaPredicted RBP14.63□□□□□ -0.07
SYNE1-240ENST00000610489 ADGRB2O60241 1585 aa14.62□□□□□ -0.07
SYNE1-240ENST00000610489 SAFB2Q14151 953 aaKnown RBP eCLIP14.62□□□□□ -0.07
SYNE1-240ENST00000610489 CDC42BPGQ6DT37 1551 aa14.61□□□□□ -0.07
SYNE1-240ENST00000610489 C14orf37Q86TY3 774 aa14.61□□□□□ -0.07
SYNE1-240ENST00000610489 CERKQ8TCT0 537 aa14.6□□□□□ -0.07
SYNE1-240ENST00000610489 MSH6P52701 1360 aa14.6□□□□□ -0.07
SYNE1-240ENST00000610489 DCCP43146 1447 aa14.6□□□□□ -0.07
SYNE1-240ENST00000610489 SBNO2Q9Y2G9 1366 aa14.59□□□□□ -0.07
SYNE1-240ENST00000610489 FMN2Q9NZ56 1722 aa14.58□□□□□ -0.07
SYNE1-240ENST00000610489 MINK1Q8N4C8 1332 aaPredicted RBP14.58□□□□□ -0.07
SYNE1-240ENST00000610489 AMER1Q5JTC6 1135 aaPredicted RBP14.58□□□□□ -0.08
SYNE1-240ENST00000610489 C19orf44Q9H6X5 657 aa14.58□□□□□ -0.08
SYNE1-240ENST00000610489 ST20-MTHFSA0A0A6YYL1 179 aa14.57□□□□□ -0.08
SYNE1-240ENST00000610489 EIF4G2P78344 907 aaKnown RBP eCLIP14.57□□□□□ -0.08
SYNE1-240ENST00000610489 HIRIP3Q9BW71 556 aaPredicted RBP14.56□□□□□ -0.08
SYNE1-240ENST00000610489 TULP4Q9NRJ4 1543 aa14.56□□□□□ -0.08
SYNE1-240ENST00000610489 HSPA5P11021 654 aaKnown RBP14.55□□□□□ -0.08
SYNE1-240ENST00000610489 ATF3P18847 181 aa14.55□□□□□ -0.08
SYNE1-240ENST00000610489 TESK2Q96S53 571 aa14.55□□□□□ -0.08
SYNE1-240ENST00000610489 RGPD8O14715 1765 aaPredicted RBP14.55□□□□□ -0.08
SYNE1-240ENST00000610489 SLC4A2P04920 1241 aa14.54□□□□□ -0.08
SYNE1-240ENST00000610489 CADPS2Q86UW7 1296 aa14.54□□□□□ -0.08
SYNE1-240ENST00000610489 WASLO00401 505 aaPredicted RBP14.53□□□□□ -0.08
SYNE1-240ENST00000610489 USP32Q8NFA0 1604 aa14.53□□□□□ -0.08
SYNE1-240ENST00000610489 MST1RQ04912 1400 aa14.53□□□□□ -0.08
SYNE1-240ENST00000610489 ITSN1Q15811 1721 aa14.52□□□□□ -0.09
SYNE1-240ENST00000610489 EVC2Q86UK5 1308 aa14.52□□□□□ -0.09
SYNE1-240ENST00000610489 HOXD11P31277 338 aaPredicted RBP14.5□□□□□ -0.09
SYNE1-240ENST00000610489 CDK19Q9BWU1 502 aa14.5□□□□□ -0.09
SYNE1-240ENST00000610489 TOPAZ1Q8N9V7 1692 aa14.5□□□□□ -0.09
SYNE1-240ENST00000610489 ANKARQ7Z5J8 1434 aa14.5□□□□□ -0.09
SYNE1-240ENST00000610489 ATP7BP35670 1465 aa14.5□□□□□ -0.09
SYNE1-240ENST00000610489 DISP3Q9P2K9 1392 aa14.49□□□□□ -0.09
SYNE1-240ENST00000610489 C1orf167Q5SNV9 1468 aa14.49□□□□□ -0.09
SYNE1-240ENST00000610489 UBAP1LF5GYI3 381 aa14.49□□□□□ -0.09
SYNE1-240ENST00000610489 TOM1O60784 492 aa14.49□□□□□ -0.09
SYNE1-240ENST00000610489 NUTM2FA1L443 756 aa14.48□□□□□ -0.09
SYNE1-240ENST00000610489 SRPK2P78362 688 aaKnown RBP14.48□□□□□ -0.09
SYNE1-240ENST00000610489 TMF1P82094 1093 aa14.48□□□□□ -0.09
SYNE1-240ENST00000610489 SLAIN2Q9P270 581 aa14.48□□□□□ -0.09
SYNE1-240ENST00000610489 ROBO1Q9Y6N7 1651 aa14.48□□□□□ -0.09
SYNE1-240ENST00000610489 CABP2Q9NPB3 220 aa14.47□□□□□ -0.09
SYNE1-240ENST00000610489 PRR36Q9H6K5 1346 aa14.47□□□□□ -0.09
SYNE1-240ENST00000610489 KIF1AQ12756 1690 aa14.46□□□□□ -0.09
SYNE1-240ENST00000610489 NUDT16Q96DE0 195 aaKnown RBP14.45□□□□□ -0.1
SYNE1-240ENST00000610489 ATAD2Q6PL18 1390 aa14.45□□□□□ -0.1
SYNE1-240ENST00000610489 PUS7Q96PZ0 661 aaKnown RBP14.44□□□□□ -0.1
SYNE1-240ENST00000610489 MYOM1P52179 1685 aa14.43□□□□□ -0.1
SYNE1-240ENST00000610489 NHSL1Q5SYE7 1610 aa14.43□□□□□ -0.1
SYNE1-240ENST00000610489 CDCA8Q53HL2 280 aa14.43□□□□□ -0.1
SYNE1-240ENST00000610489 ESCO1Q5FWF5 840 aa14.43□□□□□ -0.1
SYNE1-240ENST00000610489 BRINP3Q76B58 766 aa14.43□□□□□ -0.1
SYNE1-240ENST00000610489 ORAI2Q96SN7 254 aa14.43□□□□□ -0.1
SYNE1-240ENST00000610489 CCDC61Q9Y6R9 512 aa14.43□□□□□ -0.1
SYNE1-240ENST00000610489 PPIP5K1Q6PFW1 1433 aa14.43□□□□□ -0.1
SYNE1-240ENST00000610489 PIP4K2BP78356 416 aa14.42□□□□□ -0.1
SYNE1-240ENST00000610489 C11orf95C9JLR9 678 aaPredicted RBP14.41□□□□□ -0.1
SYNE1-240ENST00000610489 PHF8Q9UPP1 1060 aa14.41□□□□□ -0.1
SYNE1-240ENST00000610489 AKAP12Q02952 1782 aa14.41□□□□□ -0.1
SYNE1-240ENST00000610489 AHDC1Q5TGY3 1603 aaPredicted RBP14.4□□□□□ -0.1
SYNE1-240ENST00000610489 KIF7Q2M1P5 1343 aa14.39□□□□□ -0.11
SYNE1-240ENST00000610489 PLEKHG3A1L390 1219 aa14.39□□□□□ -0.11
SYNE1-240ENST00000610489 FKBP8Q14318 412 aa14.39□□□□□ -0.11
SYNE1-240ENST00000610489 PMFBP1Q8TBY8 1022 aa14.39□□□□□ -0.11
SYNE1-240ENST00000610489 CABP1Q9NZU7 370 aa14.39□□□□□ -0.11
SYNE1-240ENST00000610489 NINLQ9Y2I6 1382 aa14.39□□□□□ -0.11
SYNE1-240ENST00000610489 PHLPP1O60346 1717 aa14.38□□□□□ -0.11
SYNE1-240ENST00000610489 POLR3AO14802 1390 aaPredicted RBP14.38□□□□□ -0.11
SYNE1-240ENST00000610489 MON2Q7Z3U7 1717 aa14.38□□□□□ -0.11
SYNE1-240ENST00000610489 CCDC7Q96M83 1385 aa14.37□□□□□ -0.11
SYNE1-240ENST00000610489 POLR3GLQ9BT43 218 aa14.37□□□□□ -0.11
SYNE1-240ENST00000610489 ATXN8OSP0DMR3 200 aa14.37□□□□□ -0.11
SYNE1-240ENST00000610489 TMC1Q8TDI8 760 aa14.37□□□□□ -0.11
SYNE1-240ENST00000610489 FBXO41Q8TF61 875 aa14.37□□□□□ -0.11
SYNE1-240ENST00000610489 ACEP12821 1306 aa14.36□□□□□ -0.11
SYNE1-240ENST00000610489 WASHC2AQ641Q2 1341 aa14.36□□□□□ -0.11
SYNE1-240ENST00000610489 NPHP3Q7Z494 1330 aa14.36□□□□□ -0.11
SYNE1-240ENST00000610489 PXDNQ92626 1479 aa14.36□□□□□ -0.11
SYNE1-240ENST00000610489 CD163L1Q9NR16 1453 aa14.36□□□□□ -0.11
SYNE1-240ENST00000610489 FOXO3O43524 673 aa14.36□□□□□ -0.11
SYNE1-240ENST00000610489 MYCNP04198 464 aaPredicted RBP14.36□□□□□ -0.11
SYNE1-240ENST00000610489 NGDNQ8NEJ9 315 aaKnown RBP14.36□□□□□ -0.11
SYNE1-240ENST00000610489 SLC12A5Q9H2X9 1139 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms