RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 RAB3GAP2Q9H2M9 1393 aa11.28□□□□□ -0.6
CUX1-219ENST00000606749 RXRBP28702 533 aa11.27□□□□□ -0.61
CUX1-219ENST00000606749 ESCO1Q5FWF5 840 aa11.27□□□□□ -0.61
CUX1-219ENST00000606749 AFF2P51816 1311 aa11.27□□□□□ -0.61
CUX1-219ENST00000606749 PIK3C2GO75747 1445 aa11.26□□□□□ -0.61
CUX1-219ENST00000606749 SIRT1Q96EB6 747 aa11.26□□□□□ -0.61
CUX1-219ENST00000606749 C8orf37Q96NL8 207 aa11.26□□□□□ -0.61
CUX1-219ENST00000606749 TECPR2O15040 1411 aa11.26□□□□□ -0.61
CUX1-219ENST00000606749 FOXO3O43524 673 aa11.25□□□□□ -0.61
CUX1-219ENST00000606749 ADAMTS2O95450 1211 aa11.25□□□□□ -0.61
CUX1-219ENST00000606749 CFAP70Q5T0N1 1121 aa11.25□□□□□ -0.61
CUX1-219ENST00000606749 QTRT2Q9H974 415 aaKnown RBP11.25□□□□□ -0.61
CUX1-219ENST00000606749 PLEKHH1Q9ULM0 1364 aa11.25□□□□□ -0.61
CUX1-219ENST00000606749 LAMC1P11047 1609 aa11.24□□□□□ -0.61
CUX1-219ENST00000606749 IFT172Q9UG01 1749 aa11.24□□□□□ -0.61
CUX1-219ENST00000606749 NUTM2FA1L443 756 aa11.24□□□□□ -0.61
CUX1-219ENST00000606749 HRCP23327 699 aa11.24□□□□□ -0.61
CUX1-219ENST00000606749 NGLY1Q96IV0 654 aa11.24□□□□□ -0.61
CUX1-219ENST00000606749 NPHP3Q7Z494 1330 aa11.24□□□□□ -0.61
CUX1-219ENST00000606749 YTHDC2Q9H6S0 1430 aaKnown RBP11.24□□□□□ -0.61
CUX1-219ENST00000606749 DHX57Q6P158 1386 aaKnown RBP11.23□□□□□ -0.61
CUX1-219ENST00000606749 XPCQ01831 940 aaPredicted RBP11.22□□□□□ -0.61
CUX1-219ENST00000606749 UPF1Q92900 1129 aaKnown RBP eCLIP11.22□□□□□ -0.61
CUX1-219ENST00000606749 NRXN1Q9ULB1 1477 aa11.22□□□□□ -0.61
CUX1-219ENST00000606749 CDC42BPGQ6DT37 1551 aa11.21□□□□□ -0.61
CUX1-219ENST00000606749 RBM6P78332 1123 aaKnown RBP11.21□□□□□ -0.61
CUX1-219ENST00000606749 KDM2AQ9Y2K7 1162 aa11.21□□□□□ -0.61
CUX1-219ENST00000606749 FNBP4Q8N3X1 1017 aaPredicted RBP11.2□□□□□ -0.62
CUX1-219ENST00000606749 PRAM1Q96QH2 718 aa11.2□□□□□ -0.62
CUX1-219ENST00000606749 USP21Q9UK80 565 aa11.2□□□□□ -0.62
CUX1-219ENST00000606749 MYOM2P54296 1465 aa11.19□□□□□ -0.62
CUX1-219ENST00000606749 PXDNQ92626 1479 aa11.19□□□□□ -0.62
CUX1-219ENST00000606749 CDK12Q9NYV4 1490 aaPredicted RBP11.19□□□□□ -0.62
CUX1-219ENST00000606749 SAFB2Q14151 953 aaKnown RBP eCLIP11.19□□□□□ -0.62
CUX1-219ENST00000606749 DCAF11Q8TEB1 546 aa11.19□□□□□ -0.62
CUX1-219ENST00000606749 KNDC1Q76NI1 1749 aa11.18□□□□□ -0.62
CUX1-219ENST00000606749 KRT28Q7Z3Y7 464 aa11.18□□□□□ -0.62
CUX1-219ENST00000606749 STAC3Q96MF2 364 aa11.18□□□□□ -0.62
CUX1-219ENST00000606749 POGKQ9P215 609 aa11.18□□□□□ -0.62
CUX1-219ENST00000606749 SPATA31A3Q5VYP0 1347 aa11.17□□□□□ -0.62
CUX1-219ENST00000606749 TRPC5Q9UL62 973 aaPredicted RBP11.17□□□□□ -0.62
CUX1-219ENST00000606749 PHF8Q9UPP1 1060 aa11.17□□□□□ -0.62
CUX1-219ENST00000606749 TRAK1Q9UPV9 953 aa11.17□□□□□ -0.62
CUX1-219ENST00000606749 PSME1Q06323 249 aa11.16□□□□□ -0.62
CUX1-219ENST00000606749 COL22A1Q8NFW1 1626 aaPredicted RBP11.16□□□□□ -0.62
CUX1-219ENST00000606749 FMN2Q9NZ56 1722 aa11.15□□□□□ -0.63
CUX1-219ENST00000606749 HIRIP3Q9BW71 556 aaPredicted RBP11.14□□□□□ -0.63
CUX1-219ENST00000606749 RGS12O14924 1447 aa11.14□□□□□ -0.63
CUX1-219ENST00000606749 DLC1Q96QB1 1528 aa11.14□□□□□ -0.63
CUX1-219ENST00000606749 BCL9LQ86UU0 1499 aa11.13□□□□□ -0.63
CUX1-219ENST00000606749 ADGRB1O14514 1584 aa11.13□□□□□ -0.63
CUX1-219ENST00000606749 ATRNO75882 1429 aa11.13□□□□□ -0.63
CUX1-219ENST00000606749 PMFBP1Q8TBY8 1022 aa11.13□□□□□ -0.63
CUX1-219ENST00000606749 MINK1Q8N4C8 1332 aaPredicted RBP11.12□□□□□ -0.63
CUX1-219ENST00000606749 CABLES1Q8TDN4 633 aa11.12□□□□□ -0.63
CUX1-219ENST00000606749 GJD4Q96KN9 370 aaPredicted RBP11.12□□□□□ -0.63
CUX1-219ENST00000606749 RGPD8O14715 1765 aaPredicted RBP11.12□□□□□ -0.63
CUX1-219ENST00000606749 SBNO1A3KN83 1393 aa11.12□□□□□ -0.63
CUX1-219ENST00000606749 KIF1AQ12756 1690 aa11.11□□□□□ -0.63
CUX1-219ENST00000606749 WASLO00401 505 aaPredicted RBP11.11□□□□□ -0.63
CUX1-219ENST00000606749 UNC5CLQ8IV45 518 aa11.11□□□□□ -0.63
CUX1-219ENST00000606749 ANKARQ7Z5J8 1434 aa11.1□□□□□ -0.63
CUX1-219ENST00000606749 HAP1P54257 671 aaPredicted RBP11.1□□□□□ -0.63
CUX1-219ENST00000606749 LMOD2Q6P5Q4 547 aa11.1□□□□□ -0.63
CUX1-219ENST00000606749 PRR36Q9H6K5 1346 aa11.09□□□□□ -0.63
CUX1-219ENST00000606749 TNS3Q68CZ2 1445 aa11.09□□□□□ -0.63
CUX1-219ENST00000606749 PLEKHG5O94827 1062 aa11.09□□□□□ -0.63
CUX1-219ENST00000606749 ARHGEF10O15013 1369 aa11.08□□□□□ -0.64
CUX1-219ENST00000606749 FAM83GA6ND36 823 aa11.08□□□□□ -0.64
CUX1-219ENST00000606749 MARF1Q9Y4F3 1742 aaKnown RBP11.08□□□□□ -0.64
CUX1-219ENST00000606749 SLIT2O94813 1529 aa11.08□□□□□ -0.64
CUX1-219ENST00000606749 ADGRB2O60241 1585 aa11.07□□□□□ -0.64
CUX1-219ENST00000606749 EIF3AQ14152 1382 aaKnown RBP11.07□□□□□ -0.64
CUX1-219ENST00000606749 ATAD2Q6PL18 1390 aa11.07□□□□□ -0.64
CUX1-219ENST00000606749 USP32Q8NFA0 1604 aa11.07□□□□□ -0.64
CUX1-219ENST00000606749 GPRASP1Q5JY77 1395 aa11.06□□□□□ -0.64
CUX1-219ENST00000606749 NBPF1Q3BBV0 1214 aa11.06□□□□□ -0.64
CUX1-219ENST00000606749 NGDNQ8NEJ9 315 aaKnown RBP11.06□□□□□ -0.64
CUX1-219ENST00000606749 NUDT16Q96DE0 195 aaKnown RBP11.06□□□□□ -0.64
CUX1-219ENST00000606749 CDK19Q9BWU1 502 aa11.06□□□□□ -0.64
CUX1-219ENST00000606749 VPS72Q15906 364 aa11.05□□□□□ -0.64
CUX1-219ENST00000606749 RALGAPBQ86X10 1494 aa11.05□□□□□ -0.64
CUX1-219ENST00000606749 TULP4Q9NRJ4 1543 aa11.04□□□□□ -0.64
CUX1-219ENST00000606749 ONECUT3O60422 494 aaPredicted RBP11.04□□□□□ -0.64
CUX1-219ENST00000606749 PAK3O75914 559 aaPredicted RBP11.04□□□□□ -0.64
CUX1-219ENST00000606749 CCDC125Q86Z20 511 aa11.04□□□□□ -0.64
CUX1-219ENST00000606749 SEPT12Q8IYM1 358 aa11.03□□□□□ -0.64
CUX1-219ENST00000606749 CCDC9Q9Y3X0 531 aaKnown RBP11.03□□□□□ -0.64
CUX1-219ENST00000606749 CCDC61Q9Y6R9 512 aa11.03□□□□□ -0.64
CUX1-219ENST00000606749 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.03□□□□□ -0.64
CUX1-219ENST00000606749 TRPM3Q9HCF6 1732 aaPredicted RBP11.02□□□□□ -0.65
CUX1-219ENST00000606749 L3MBTL2Q969R5 705 aa11.02□□□□□ -0.65
CUX1-219ENST00000606749 BTG4Q9NY30 223 aa11.02□□□□□ -0.65
CUX1-219ENST00000606749 GLI3P10071 1580 aa11.02□□□□□ -0.65
CUX1-219ENST00000606749 ARHGEF28Q8N1W1 1705 aaKnown RBP11.01□□□□□ -0.65
CUX1-219ENST00000606749 EP400Q96L91 3159 aa11.01□□□□□ -0.65
CUX1-219ENST00000606749 PLEKHG3A1L390 1219 aa11.01□□□□□ -0.65
CUX1-219ENST00000606749 NBPF8Q3BBV2 869 aa11.01□□□□□ -0.65
CUX1-219ENST00000606749 SIN3AQ96ST3 1273 aa11.01□□□□□ -0.65
CUX1-219ENST00000606749 ACEP12821 1306 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 88.3 ms