RNA–Protein interactions for RNA: ENST00000602239.1

SHKBP1-228, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 450 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-228ENST00000602239 ESCO1Q5FWF5 840 aa23.42■■□□□ 1.34
SHKBP1-228ENST00000602239 LAMC1P11047 1609 aa23.41■■□□□ 1.34
SHKBP1-228ENST00000602239 NUTM2FA1L443 756 aa23.4■■□□□ 1.34
SHKBP1-228ENST00000602239 UPF1Q92900 1129 aaKnown RBP eCLIP23.4■■□□□ 1.34
SHKBP1-228ENST00000602239 QTRT2Q9H974 415 aaKnown RBP23.4■■□□□ 1.34
SHKBP1-228ENST00000602239 LRPPRCP42704 1394 aaKnown RBP23.4■■□□□ 1.34
SHKBP1-228ENST00000602239 PLEKHH1Q9ULM0 1364 aa23.4■■□□□ 1.34
SHKBP1-228ENST00000602239 IFT172Q9UG01 1749 aa23.39■■□□□ 1.34
SHKBP1-228ENST00000602239 NGLY1Q96IV0 654 aa23.38■■□□□ 1.33
SHKBP1-228ENST00000602239 ABCC11Q96J66 1382 aa23.38■■□□□ 1.33
SHKBP1-228ENST00000602239 TECPR2O15040 1411 aa23.37■■□□□ 1.33
SHKBP1-228ENST00000602239 PIK3C2GO75747 1445 aa23.37■■□□□ 1.33
SHKBP1-228ENST00000602239 FOXO3O43524 673 aa23.37■■□□□ 1.33
SHKBP1-228ENST00000602239 XPCQ01831 940 aaPredicted RBP23.36■■□□□ 1.33
SHKBP1-228ENST00000602239 CDC42BPGQ6DT37 1551 aa23.35■■□□□ 1.33
SHKBP1-228ENST00000602239 C14orf93Q9H972 538 aaKnown RBP23.34■■□□□ 1.33
SHKBP1-228ENST00000602239 NPHP3Q7Z494 1330 aa23.33■■□□□ 1.33
SHKBP1-228ENST00000602239 CFAP70Q5T0N1 1121 aa23.33■■□□□ 1.33
SHKBP1-228ENST00000602239 YTHDC2Q9H6S0 1430 aaKnown RBP23.33■■□□□ 1.32
SHKBP1-228ENST00000602239 CDK12Q9NYV4 1490 aaPredicted RBP23.32■■□□□ 1.32
SHKBP1-228ENST00000602239 RAB3GAP2Q9H2M9 1393 aa23.32■■□□□ 1.32
SHKBP1-228ENST00000602239 RBM6P78332 1123 aaKnown RBP23.32■■□□□ 1.32
SHKBP1-228ENST00000602239 ACIN1Q9UKV3 1341 aaKnown RBP23.32■■□□□ 1.32
SHKBP1-228ENST00000602239 PXDNQ92626 1479 aa23.3■■□□□ 1.32
SHKBP1-228ENST00000602239 SIRT1Q96EB6 747 aa23.29■■□□□ 1.32
SHKBP1-228ENST00000602239 USP21Q9UK80 565 aa23.29■■□□□ 1.32
SHKBP1-228ENST00000602239 FNBP4Q8N3X1 1017 aaPredicted RBP23.28■■□□□ 1.32
SHKBP1-228ENST00000602239 KNDC1Q76NI1 1749 aa23.28■■□□□ 1.32
SHKBP1-228ENST00000602239 RGS12O14924 1447 aa23.27■■□□□ 1.32
SHKBP1-228ENST00000602239 NRXN1Q9ULB1 1477 aa23.27■■□□□ 1.32
SHKBP1-228ENST00000602239 COL22A1Q8NFW1 1626 aaPredicted RBP23.26■■□□□ 1.31
SHKBP1-228ENST00000602239 MYOM2P54296 1465 aa23.25■■□□□ 1.31
SHKBP1-228ENST00000602239 DHX57Q6P158 1386 aaKnown RBP23.25■■□□□ 1.31
SHKBP1-228ENST00000602239 SAFB2Q14151 953 aaKnown RBP eCLIP23.24■■□□□ 1.31
SHKBP1-228ENST00000602239 PRAM1Q96QH2 718 aa23.23■■□□□ 1.31
SHKBP1-228ENST00000602239 TRPC5Q9UL62 973 aaPredicted RBP23.22■■□□□ 1.31
SHKBP1-228ENST00000602239 FMN2Q9NZ56 1722 aa23.22■■□□□ 1.31
SHKBP1-228ENST00000602239 KRT28Q7Z3Y7 464 aa23.21■■□□□ 1.31
SHKBP1-228ENST00000602239 SPATA31A3Q5VYP0 1347 aa23.2■■□□□ 1.3
SHKBP1-228ENST00000602239 KDM2AQ9Y2K7 1162 aa23.2■■□□□ 1.3
SHKBP1-228ENST00000602239 PHF8Q9UPP1 1060 aa23.19■■□□□ 1.3
SHKBP1-228ENST00000602239 BCL9LQ86UU0 1499 aa23.18■■□□□ 1.3
SHKBP1-228ENST00000602239 ATRNO75882 1429 aa23.18■■□□□ 1.3
SHKBP1-228ENST00000602239 RGPD8O14715 1765 aaPredicted RBP23.17■■□□□ 1.3
SHKBP1-228ENST00000602239 DCAF11Q8TEB1 546 aa23.17■■□□□ 1.3
SHKBP1-228ENST00000602239 POGKQ9P215 609 aa23.17■■□□□ 1.3
SHKBP1-228ENST00000602239 TRAK1Q9UPV9 953 aa23.16■■□□□ 1.3
SHKBP1-228ENST00000602239 KIF1AQ12756 1690 aa23.13■■□□□ 1.29
SHKBP1-228ENST00000602239 PLEKHG5O94827 1062 aa23.13■■□□□ 1.29
SHKBP1-228ENST00000602239 CABLES1Q8TDN4 633 aa23.13■■□□□ 1.29
SHKBP1-228ENST00000602239 HIRIP3Q9BW71 556 aaPredicted RBP23.13■■□□□ 1.29
SHKBP1-228ENST00000602239 ADGRB1O14514 1584 aa23.12■■□□□ 1.29
SHKBP1-228ENST00000602239 PSME1Q06323 249 aa23.12■■□□□ 1.29
SHKBP1-228ENST00000602239 PMFBP1Q8TBY8 1022 aa23.12■■□□□ 1.29
SHKBP1-228ENST00000602239 MARF1Q9Y4F3 1742 aaKnown RBP23.12■■□□□ 1.29
SHKBP1-228ENST00000602239 HRCP23327 699 aa23.11■■□□□ 1.29
SHKBP1-228ENST00000602239 GJD4Q96KN9 370 aaPredicted RBP23.11■■□□□ 1.29
SHKBP1-228ENST00000602239 DLC1Q96QB1 1528 aa23.11■■□□□ 1.29
SHKBP1-228ENST00000602239 LMOD2Q6P5Q4 547 aa23.09■■□□□ 1.29
SHKBP1-228ENST00000602239 UNC5CLQ8IV45 518 aa23.09■■□□□ 1.29
SHKBP1-228ENST00000602239 MINK1Q8N4C8 1332 aaPredicted RBP23.08■■□□□ 1.29
SHKBP1-228ENST00000602239 TNS3Q68CZ2 1445 aa23.08■■□□□ 1.29
SHKBP1-228ENST00000602239 ATAD2Q6PL18 1390 aa23.08■■□□□ 1.29
SHKBP1-228ENST00000602239 USP32Q8NFA0 1604 aa23.07■■□□□ 1.28
SHKBP1-228ENST00000602239 SLIT2O94813 1529 aa23.07■■□□□ 1.28
SHKBP1-228ENST00000602239 SBNO1A3KN83 1393 aa23.06■■□□□ 1.28
SHKBP1-228ENST00000602239 HAP1P54257 671 aaPredicted RBP23.06■■□□□ 1.28
SHKBP1-228ENST00000602239 PRR36Q9H6K5 1346 aa23.05■■□□□ 1.28
SHKBP1-228ENST00000602239 STAC3Q96MF2 364 aa23.04■■□□□ 1.28
SHKBP1-228ENST00000602239 ANKARQ7Z5J8 1434 aa23.04■■□□□ 1.28
SHKBP1-228ENST00000602239 EP400Q96L91 3159 aa23.03■■□□□ 1.28
SHKBP1-228ENST00000602239 WASLO00401 505 aaPredicted RBP23.03■■□□□ 1.28
SHKBP1-228ENST00000602239 RALGAPBQ86X10 1494 aa23.02■■□□□ 1.28
SHKBP1-228ENST00000602239 ADGRB2O60241 1585 aa23.01■■□□□ 1.27
SHKBP1-228ENST00000602239 FAM83GA6ND36 823 aa23.01■■□□□ 1.27
SHKBP1-228ENST00000602239 TNKS1BP1Q9C0C2 1729 aaKnown RBP23■■□□□ 1.27
SHKBP1-228ENST00000602239 GLI3P10071 1580 aa23■■□□□ 1.27
SHKBP1-228ENST00000602239 ARHGEF10O15013 1369 aa23■■□□□ 1.27
SHKBP1-228ENST00000602239 VPS72Q15906 364 aa22.97■■□□□ 1.27
SHKBP1-228ENST00000602239 GPRASP1Q5JY77 1395 aa22.96■■□□□ 1.27
SHKBP1-228ENST00000602239 TULP4Q9NRJ4 1543 aa22.96■■□□□ 1.27
SHKBP1-228ENST00000602239 SEPT12Q8IYM1 358 aa22.95■■□□□ 1.26
SHKBP1-228ENST00000602239 NGDNQ8NEJ9 315 aaKnown RBP22.95■■□□□ 1.26
SHKBP1-228ENST00000602239 ABCA3Q99758 1704 aa22.94■■□□□ 1.26
SHKBP1-228ENST00000602239 TRPM3Q9HCF6 1732 aaPredicted RBP22.94■■□□□ 1.26
SHKBP1-228ENST00000602239 CCDC9Q9Y3X0 531 aaKnown RBP22.94■■□□□ 1.26
SHKBP1-228ENST00000602239 EIF3AQ14152 1382 aaKnown RBP22.93■■□□□ 1.26
SHKBP1-228ENST00000602239 ONECUT3O60422 494 aaPredicted RBP22.93■■□□□ 1.26
SHKBP1-228ENST00000602239 CCDC125Q86Z20 511 aa22.93■■□□□ 1.26
SHKBP1-228ENST00000602239 NUDT16Q96DE0 195 aaKnown RBP22.93■■□□□ 1.26
SHKBP1-228ENST00000602239 SRCAPQ6ZRS2 3230 aa22.92■■□□□ 1.26
SHKBP1-228ENST00000602239 PAK3O75914 559 aaPredicted RBP22.92■■□□□ 1.26
SHKBP1-228ENST00000602239 NBPF1Q3BBV0 1214 aa22.92■■□□□ 1.26
SHKBP1-228ENST00000602239 PLCH1Q4KWH8 1693 aa22.91■■□□□ 1.26
SHKBP1-228ENST00000602239 CDK19Q9BWU1 502 aa22.91■■□□□ 1.26
SHKBP1-228ENST00000602239 ARHGEF28Q8N1W1 1705 aaKnown RBP22.91■■□□□ 1.26
SHKBP1-228ENST00000602239 ALS2Q96Q42 1657 aa22.9■■□□□ 1.26
SHKBP1-228ENST00000602239 BRWD3Q6RI45 1802 aa22.9■■□□□ 1.26
SHKBP1-228ENST00000602239 BTG4Q9NY30 223 aa22.9■■□□□ 1.26
SHKBP1-228ENST00000602239 NWD2Q9ULI1 1742 aa22.9■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms