RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.1■□□□□ 0.81
UPF1-211ENST00000600868 LTBP4Q8N2S1 1624 aa20.1■□□□□ 0.81
UPF1-211ENST00000600868 LRRC7Q96NW7 1537 aa20.1■□□□□ 0.81
UPF1-211ENST00000600868 TMEM94Q12767 1356 aa20.08■□□□□ 0.81
UPF1-211ENST00000600868 ADGRB2O60241 1585 aa20.08■□□□□ 0.81
UPF1-211ENST00000600868 MINK1Q8N4C8 1332 aaPredicted RBP20.08■□□□□ 0.81
UPF1-211ENST00000600868 TMF1P82094 1093 aa20.08■□□□□ 0.81
UPF1-211ENST00000600868 ADGRL3Q9HAR2 1447 aa20.08■□□□□ 0.8
UPF1-211ENST00000600868 EVC2Q86UK5 1308 aa20.06■□□□□ 0.8
UPF1-211ENST00000600868 NALCNQ8IZF0 1738 aa20.06■□□□□ 0.8
UPF1-211ENST00000600868 RBM33Q96EV2 1170 aaKnown RBP20.06■□□□□ 0.8
UPF1-211ENST00000600868 XIRP1Q702N8 1843 aaKnown RBP20.05■□□□□ 0.8
UPF1-211ENST00000600868 TULP4Q9NRJ4 1543 aa20.05■□□□□ 0.8
UPF1-211ENST00000600868 WASLO00401 505 aaPredicted RBP20.04■□□□□ 0.8
UPF1-211ENST00000600868 C14orf37Q86TY3 774 aa20.04■□□□□ 0.8
UPF1-211ENST00000600868 C19orf44Q9H6X5 657 aa20.04■□□□□ 0.8
UPF1-211ENST00000600868 DISP3Q9P2K9 1392 aa20.04■□□□□ 0.8
UPF1-211ENST00000600868 ZNF316A6NFI3 1004 aaPredicted RBP20.03■□□□□ 0.8
UPF1-211ENST00000600868 C11orf95C9JLR9 678 aaPredicted RBP20.03■□□□□ 0.8
UPF1-211ENST00000600868 CDCA8Q53HL2 280 aa20.03■□□□□ 0.8
UPF1-211ENST00000600868 PUS7Q96PZ0 661 aaKnown RBP20.03■□□□□ 0.8
UPF1-211ENST00000600868 CDC42BPGQ6DT37 1551 aa20.03■□□□□ 0.8
UPF1-211ENST00000600868 CDK19Q9BWU1 502 aa20.02■□□□□ 0.8
UPF1-211ENST00000600868 DCCP43146 1447 aa20.02■□□□□ 0.79
UPF1-211ENST00000600868 MSH6P52701 1360 aa20■□□□□ 0.79
UPF1-211ENST00000600868 KIF7Q2M1P5 1343 aa19.99■□□□□ 0.79
UPF1-211ENST00000600868 SRPK2P78362 688 aaKnown RBP19.98■□□□□ 0.79
UPF1-211ENST00000600868 CCDC7Q96M83 1385 aa19.97■□□□□ 0.79
UPF1-211ENST00000600868 FMN2Q9NZ56 1722 aa19.97■□□□□ 0.79
UPF1-211ENST00000600868 CABP2Q9NPB3 220 aa19.97■□□□□ 0.79
UPF1-211ENST00000600868 WASHC2AQ641Q2 1341 aa19.97■□□□□ 0.79
UPF1-211ENST00000600868 ATF3P18847 181 aa19.96■□□□□ 0.79
UPF1-211ENST00000600868 CADPS2Q86UW7 1296 aa19.96■□□□□ 0.79
UPF1-211ENST00000600868 ATAD2Q6PL18 1390 aa19.95■□□□□ 0.79
UPF1-211ENST00000600868 ANKARQ7Z5J8 1434 aa19.95■□□□□ 0.78
UPF1-211ENST00000600868 ATP7BP35670 1465 aa19.93■□□□□ 0.78
UPF1-211ENST00000600868 IQSEC2Q5JU85 1478 aa19.93■□□□□ 0.78
UPF1-211ENST00000600868 NUDT16Q96DE0 195 aaKnown RBP19.93■□□□□ 0.78
UPF1-211ENST00000600868 PRR36Q9H6K5 1346 aa19.93■□□□□ 0.78
UPF1-211ENST00000600868 USP32Q8NFA0 1604 aa19.92■□□□□ 0.78
UPF1-211ENST00000600868 CCDC61Q9Y6R9 512 aa19.92■□□□□ 0.78
UPF1-211ENST00000600868 POLR3GLQ9BT43 218 aa19.91■□□□□ 0.78
UPF1-211ENST00000600868 NINLQ9Y2I6 1382 aa19.91■□□□□ 0.78
UPF1-211ENST00000600868 MST1RQ04912 1400 aa19.91■□□□□ 0.78
UPF1-211ENST00000600868 NUTM2FA1L443 756 aa19.9■□□□□ 0.78
UPF1-211ENST00000600868 ITSN1Q15811 1721 aa19.89■□□□□ 0.77
UPF1-211ENST00000600868 C1orf167Q5SNV9 1468 aa19.89■□□□□ 0.77
UPF1-211ENST00000600868 TOPAZ1Q8N9V7 1692 aa19.89■□□□□ 0.77
UPF1-211ENST00000600868 CERKQ8TCT0 537 aa19.88■□□□□ 0.77
UPF1-211ENST00000600868 PPIP5K1Q6PFW1 1433 aa19.87■□□□□ 0.77
UPF1-211ENST00000600868 RGPD8O14715 1765 aaPredicted RBP19.87■□□□□ 0.77
UPF1-211ENST00000600868 MYOM1P52179 1685 aa19.87■□□□□ 0.77
UPF1-211ENST00000600868 PLEKHG3A1L390 1219 aa19.86■□□□□ 0.77
UPF1-211ENST00000600868 TMC1Q8TDI8 760 aa19.86■□□□□ 0.77
UPF1-211ENST00000600868 SLC12A5Q9H2X9 1139 aa19.86■□□□□ 0.77
UPF1-211ENST00000600868 CABP1Q9NZU7 370 aa19.86■□□□□ 0.77
UPF1-211ENST00000600868 SLAIN2Q9P270 581 aa19.86■□□□□ 0.77
UPF1-211ENST00000600868 ESCO1Q5FWF5 840 aa19.83■□□□□ 0.77
UPF1-211ENST00000600868 PHF8Q9UPP1 1060 aa19.83■□□□□ 0.77
UPF1-211ENST00000600868 ORAI2Q96SN7 254 aa19.82■□□□□ 0.76
UPF1-211ENST00000600868 CD163L1Q9NR16 1453 aa19.81■□□□□ 0.76
UPF1-211ENST00000600868 TOM1O60784 492 aa19.81■□□□□ 0.76
UPF1-211ENST00000600868 TERF2IPQ9NYB0 399 aa19.81■□□□□ 0.76
UPF1-211ENST00000600868 POLR3AO14802 1390 aaPredicted RBP19.81■□□□□ 0.76
UPF1-211ENST00000600868 ANKRD36BQ8N2N9 1353 aa19.81■□□□□ 0.76
UPF1-211ENST00000600868 KIF1AQ12756 1690 aa19.81■□□□□ 0.76
UPF1-211ENST00000600868 CPSF1Q10570 1443 aaKnown RBP19.8■□□□□ 0.76
UPF1-211ENST00000600868 DDX10Q13206 875 aaKnown RBP19.8■□□□□ 0.76
UPF1-211ENST00000600868 ACEP12821 1306 aa19.79■□□□□ 0.76
UPF1-211ENST00000600868 HDGFL2Q7Z4V5 671 aaPredicted RBP19.79■□□□□ 0.76
UPF1-211ENST00000600868 PMFBP1Q8TBY8 1022 aa19.79■□□□□ 0.76
UPF1-211ENST00000600868 PANK3Q9H999 370 aa19.79■□□□□ 0.76
UPF1-211ENST00000600868 BRINP3Q76B58 766 aa19.78■□□□□ 0.76
UPF1-211ENST00000600868 NGDNQ8NEJ9 315 aaKnown RBP19.78■□□□□ 0.76
UPF1-211ENST00000600868 ZNF692Q9BU19 519 aaPredicted RBP19.78■□□□□ 0.76
UPF1-211ENST00000600868 A0A1W2PP64 1363 aa19.78■□□□□ 0.76
UPF1-211ENST00000600868 AKAP12Q02952 1782 aa19.78■□□□□ 0.76
UPF1-211ENST00000600868 UBAP1LF5GYI3 381 aa19.77■□□□□ 0.76
UPF1-211ENST00000600868 MON2Q7Z3U7 1717 aa19.74■□□□□ 0.75
UPF1-211ENST00000600868 KTN1Q86UP2 1357 aaKnown RBP19.74■□□□□ 0.75
UPF1-211ENST00000600868 FOXO3O43524 673 aa19.74■□□□□ 0.75
UPF1-211ENST00000600868 CARD14Q9BXL6 1004 aa19.74■□□□□ 0.75
UPF1-211ENST00000600868 USP6P35125 1406 aa19.74■□□□□ 0.75
UPF1-211ENST00000600868 BRD4O60885 1362 aaPredicted RBP19.73■□□□□ 0.75
UPF1-211ENST00000600868 PER1O15534 1290 aaPredicted RBP19.73■□□□□ 0.75
UPF1-211ENST00000600868 NPHP3Q7Z494 1330 aa19.73■□□□□ 0.75
UPF1-211ENST00000600868 ROBO1Q9Y6N7 1651 aa19.72■□□□□ 0.75
UPF1-211ENST00000600868 PSME1Q06323 249 aa19.72■□□□□ 0.75
UPF1-211ENST00000600868 EDC4Q6P2E9 1401 aaKnown RBP19.72■□□□□ 0.75
UPF1-211ENST00000600868 SSH2Q76I76 1423 aa19.71■□□□□ 0.75
UPF1-211ENST00000600868 NSD3Q9BZ95 1437 aa19.7■□□□□ 0.74
UPF1-211ENST00000600868 KNSTRNQ9Y448 316 aa19.7■□□□□ 0.74
UPF1-211ENST00000600868 NRKQ7Z2Y5 1582 aa19.7■□□□□ 0.74
UPF1-211ENST00000600868 NHSL1Q5SYE7 1610 aa19.69■□□□□ 0.74
UPF1-211ENST00000600868 KRT28Q7Z3Y7 464 aa19.69■□□□□ 0.74
UPF1-211ENST00000600868 PIP4K2BP78356 416 aa19.68■□□□□ 0.74
UPF1-211ENST00000600868 TTC21BQ7Z4L5 1316 aa19.68■□□□□ 0.74
UPF1-211ENST00000600868 PXDNQ92626 1479 aa19.67■□□□□ 0.74
UPF1-211ENST00000600868 AHDC1Q5TGY3 1603 aaPredicted RBP19.67■□□□□ 0.74
UPF1-211ENST00000600868 DDX17Q92841 729 aaKnown RBP19.67■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms